RNA–Protein interactions for RNA: ENST00000356786.9

CCDC88B-202, Transcript of coiled-coil domain containing 88B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC88B, Length 4,915 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-202ENST00000356786 CXCL9Q07325 125 aa19.55■□□□□ 0.72
CCDC88B-202ENST00000356786 STXBP5LQ9Y2K9 1186 aa19.55■□□□□ 0.72
CCDC88B-202ENST00000356786 YDJCA8MPS7 323 aa19.55■□□□□ 0.72
CCDC88B-202ENST00000356786 CCNE2O96020 404 aa19.55■□□□□ 0.72
CCDC88B-202ENST00000356786 RCVRNP35243 200 aa19.55■□□□□ 0.72
CCDC88B-202ENST00000356786 ECT2LQ008S8 904 aa19.55■□□□□ 0.72
CCDC88B-202ENST00000356786 DENND6AQ8IWF6 608 aa19.55■□□□□ 0.72
CCDC88B-202ENST00000356786 BBS4Q96RK4 519 aa19.55■□□□□ 0.72
CCDC88B-202ENST00000356786 SLITRK2Q9H156 845 aa19.55■□□□□ 0.72
CCDC88B-202ENST00000356786 LRRC42Q9Y546 428 aa19.55■□□□□ 0.72
CCDC88B-202ENST00000356786 DLG5Q8TDM6 1919 aa19.55■□□□□ 0.72
CCDC88B-202ENST00000356786 PALM2-AKAP2B1ALY0 433 aaPredicted RBP19.55■□□□□ 0.72
CCDC88B-202ENST00000356786 TCEA3O75764 348 aa19.55■□□□□ 0.72
CCDC88B-202ENST00000356786 EGFRP00533 1210 aa19.55■□□□□ 0.72
CCDC88B-202ENST00000356786 GPIP06744 558 aa19.55■□□□□ 0.72
CCDC88B-202ENST00000356786 KHDRBS2Q5VWX1 349 aaKnown RBP19.55■□□□□ 0.72
CCDC88B-202ENST00000356786 WSCD1Q658N2 575 aa19.55■□□□□ 0.72
CCDC88B-202ENST00000356786 YAF2Q8IY57 180 aa19.55■□□□□ 0.72
CCDC88B-202ENST00000356786 POP5Q969H6 163 aaKnown RBP19.55■□□□□ 0.72
CCDC88B-202ENST00000356786 LENG9Q96B70 501 aa19.55■□□□□ 0.72
CCDC88B-202ENST00000356786 HPGDP15428 266 aa19.55■□□□□ 0.72
CCDC88B-202ENST00000356786 WNT3AP56704 352 aa19.55■□□□□ 0.72
CCDC88B-202ENST00000356786 RAB15P59190 212 aa19.55■□□□□ 0.72
CCDC88B-202ENST00000356786 SPIBQ01892 262 aa19.55■□□□□ 0.72
CCDC88B-202ENST00000356786 KLHDC10Q6PID8 442 aa19.55■□□□□ 0.72
CCDC88B-202ENST00000356786 SUN5Q8TC36 379 aa19.55■□□□□ 0.72
CCDC88B-202ENST00000356786 CSPG4P5Q96PW8 444 aa19.55■□□□□ 0.72
CCDC88B-202ENST00000356786 CHRAC1Q9NRG0 131 aa19.55■□□□□ 0.72
CCDC88B-202ENST00000356786 SMPD4Q9NXE4 827 aa19.55■□□□□ 0.72
CCDC88B-202ENST00000356786 KIAA0319LQ8IZA0 1049 aa19.54■□□□□ 0.72
CCDC88B-202ENST00000356786 ACO2Q99798 780 aaKnown RBP19.54■□□□□ 0.72
CCDC88B-202ENST00000356786 RBM4BQ9BQ04 359 aaKnown RBP19.54■□□□□ 0.72
CCDC88B-202ENST00000356786 RBM4Q9BWF3 364 aaKnown RBP19.54■□□□□ 0.72
CCDC88B-202ENST00000356786 LHX5Q9H2C1 402 aa19.54■□□□□ 0.72
CCDC88B-202ENST00000356786 UGT2B11O75310 529 aa19.54■□□□□ 0.72
CCDC88B-202ENST00000356786 MTA2O94776 668 aa19.54■□□□□ 0.72
CCDC88B-202ENST00000356786 LRATO95237 230 aa19.54■□□□□ 0.72
CCDC88B-202ENST00000356786 FYNP06241 537 aa19.54■□□□□ 0.72
CCDC88B-202ENST00000356786 CD48P09326 243 aa19.54■□□□□ 0.72
CCDC88B-202ENST00000356786 SLURP2P0DP57 97 aa19.54■□□□□ 0.72
CCDC88B-202ENST00000356786 IGFBP5P24593 272 aa19.54■□□□□ 0.72
CCDC88B-202ENST00000356786 LIMK2P53671 638 aa19.54■□□□□ 0.72
CCDC88B-202ENST00000356786 ARMC12Q5T9G4 340 aa19.54■□□□□ 0.72
CCDC88B-202ENST00000356786 TXNDC11Q6PKC3 985 aa19.54■□□□□ 0.72
CCDC88B-202ENST00000356786 ADAMTSL2Q86TH1 951 aa19.54■□□□□ 0.72
CCDC88B-202ENST00000356786 ERI1Q8IV48 349 aaKnown RBP19.54■□□□□ 0.72
CCDC88B-202ENST00000356786 SLC34A3Q8N130 599 aa19.54■□□□□ 0.72
CCDC88B-202ENST00000356786 RAB2BQ8WUD1 216 aa19.54■□□□□ 0.72
CCDC88B-202ENST00000356786 REPS1Q96D71 796 aa19.54■□□□□ 0.72
CCDC88B-202ENST00000356786 SLC25A13Q9UJS0 675 aa19.54■□□□□ 0.72
CCDC88B-202ENST00000356786 POLR3HQ9Y535 204 aaPredicted RBP19.54■□□□□ 0.72
CCDC88B-202ENST00000356786 PCDHB5Q9Y5E4 795 aa19.54■□□□□ 0.72
CCDC88B-202ENST00000356786 KIF13AQ9H1H9 1805 aa19.54■□□□□ 0.72
CCDC88B-202ENST00000356786 NFASCO94856 1347 aa19.54■□□□□ 0.72
CCDC88B-202ENST00000356786 H3BMM5 538 aa19.54■□□□□ 0.72
CCDC88B-202ENST00000356786 DHX15O43143 795 aaKnown RBP19.54■□□□□ 0.72
CCDC88B-202ENST00000356786 YWHAQP27348 245 aa19.54■□□□□ 0.72
CCDC88B-202ENST00000356786 ALDH4A1P30038 563 aa19.54■□□□□ 0.72
CCDC88B-202ENST00000356786 TTPAP49638 278 aa19.54■□□□□ 0.72
CCDC88B-202ENST00000356786 ACLYP53396 1101 aa19.54■□□□□ 0.72
CCDC88B-202ENST00000356786 ARPC4P59998 168 aa19.54■□□□□ 0.72
CCDC88B-202ENST00000356786 PSMD5Q16401 504 aa19.54■□□□□ 0.72
CCDC88B-202ENST00000356786 UGCGQ16739 394 aa19.54■□□□□ 0.72
CCDC88B-202ENST00000356786 OSGEPL1Q9H4B0 414 aa19.54■□□□□ 0.72
CCDC88B-202ENST00000356786 ABCC13Q9NSE7 274 aa19.54■□□□□ 0.72
CCDC88B-202ENST00000356786 H7C4K7 107 aa19.54■□□□□ 0.72
CCDC88B-202ENST00000356786 PLSCR1O15162 318 aa19.54■□□□□ 0.72
CCDC88B-202ENST00000356786 OR10H3O60404 316 aa19.54■□□□□ 0.72
CCDC88B-202ENST00000356786 CKMT2P17540 419 aa19.54■□□□□ 0.72
CCDC88B-202ENST00000356786 CTSKP43235 329 aa19.54■□□□□ 0.72
CCDC88B-202ENST00000356786 RAB25P57735 213 aa19.54■□□□□ 0.72
CCDC88B-202ENST00000356786 COPZ1P61923 177 aa19.54■□□□□ 0.72
CCDC88B-202ENST00000356786 GRM3Q14832 879 aa19.54■□□□□ 0.72
CCDC88B-202ENST00000356786 FAM83AQ86UY5 434 aa19.54■□□□□ 0.72
CCDC88B-202ENST00000356786 CPNE8Q86YQ8 564 aa19.54■□□□□ 0.72
CCDC88B-202ENST00000356786 AHI1Q8N157 1196 aa19.54■□□□□ 0.72
CCDC88B-202ENST00000356786 YME1L1Q96TA2 773 aa19.54■□□□□ 0.72
CCDC88B-202ENST00000356786 B3GNT5Q9BYG0 378 aa19.54■□□□□ 0.72
CCDC88B-202ENST00000356786 ASB8Q9H765 288 aa19.54■□□□□ 0.72
CCDC88B-202ENST00000356786 NOCTQ9UK39 431 aaKnown RBP19.54■□□□□ 0.72
CCDC88B-202ENST00000356786 PCDHB7Q9Y5E2 793 aa19.54■□□□□ 0.72
CCDC88B-202ENST00000356786 PCP4L1A6NKN8 68 aa19.53■□□□□ 0.72
CCDC88B-202ENST00000356786 UBA1P22314 1058 aaKnown RBP19.53■□□□□ 0.72
CCDC88B-202ENST00000356786 AZGP1P25311 298 aaKnown RBP19.53■□□□□ 0.72
CCDC88B-202ENST00000356786 PPP1R26Q5T8A7 1209 aaPredicted RBP19.53■□□□□ 0.72
CCDC88B-202ENST00000356786 REP15Q6BDI9 236 aa19.53■□□□□ 0.72
CCDC88B-202ENST00000356786 CLEC6AQ6EIG7 209 aa19.53■□□□□ 0.72
CCDC88B-202ENST00000356786 AHSA2Q719I0 299 aa19.53■□□□□ 0.72
CCDC88B-202ENST00000356786 MFSD3Q96ES6 412 aa19.53■□□□□ 0.72
CCDC88B-202ENST00000356786 TMEM169Q96HH4 297 aa19.53■□□□□ 0.72
CCDC88B-202ENST00000356786 KIFC1Q9BW19 673 aa19.53■□□□□ 0.72
CCDC88B-202ENST00000356786 SP140LQ9H930 580 aa19.53■□□□□ 0.72
CCDC88B-202ENST00000356786 TMEM138Q9NPI0 162 aa19.53■□□□□ 0.72
CCDC88B-202ENST00000356786 PDE10AQ9Y233 779 aa19.53■□□□□ 0.72
CCDC88B-202ENST00000356786 HES2Q9Y543 173 aa19.53■□□□□ 0.72
CCDC88B-202ENST00000356786 UBE2QL1A1L167 161 aa19.53■□□□□ 0.72
CCDC88B-202ENST00000356786 SUV39H1O43463 412 aa19.53■□□□□ 0.72
CCDC88B-202ENST00000356786 DLG1Q12959 904 aa19.53■□□□□ 0.72
CCDC88B-202ENST00000356786 AKIRIN2Q53H80 203 aa19.53■□□□□ 0.72
CCDC88B-202ENST00000356786 PTCHD4Q6ZW05 846 aa19.53■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms