RNA–Protein interactions for RNA: ENST00000264010.8

CTCF-201, Transcript of CCCTC-binding factor, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CTCF, Length 3,939 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-201ENST00000264010 USP41Q3LFD5 358 aa16.32■□□□□ 0.2
CTCF-201ENST00000264010 RALGPS1Q5JS13 557 aa16.32■□□□□ 0.2
CTCF-201ENST00000264010 EFL1Q7Z2Z2 1120 aaKnown RBP16.32■□□□□ 0.2
CTCF-201ENST00000264010 BNIPLQ7Z465 357 aa16.32■□□□□ 0.2
CTCF-201ENST00000264010 FBXW8Q8N3Y1 598 aa16.32■□□□□ 0.2
CTCF-201ENST00000264010 C2orf15Q8WU43 125 aaKnown RBP16.32■□□□□ 0.2
CTCF-201ENST00000264010 MARK4Q96L34 752 aa16.32■□□□□ 0.2
CTCF-201ENST00000264010 PLEKHG4BQ96PX9 1271 aa16.32■□□□□ 0.2
CTCF-201ENST00000264010 TRAPPC9Q96Q05 1148 aa16.32■□□□□ 0.2
CTCF-201ENST00000264010 ASB2Q96Q27 587 aa16.32■□□□□ 0.2
CTCF-201ENST00000264010 GID8Q9NWU2 228 aa16.32■□□□□ 0.2
CTCF-201ENST00000264010 CDH22Q9UJ99 828 aa16.32■□□□□ 0.2
CTCF-201ENST00000264010 PRELID1Q9Y255 219 aa16.32■□□□□ 0.2
CTCF-201ENST00000264010 CCL22O00626 93 aa16.31■□□□□ 0.2
CTCF-201ENST00000264010 NDST3O95803 873 aa16.31■□□□□ 0.2
CTCF-201ENST00000264010 CST5P28325 142 aaPredicted RBP16.31■□□□□ 0.2
CTCF-201ENST00000264010 FASTKQ14296 549 aaKnown RBP16.31■□□□□ 0.2
CTCF-201ENST00000264010 DEFB128Q7Z7B8 93 aa16.31■□□□□ 0.2
CTCF-201ENST00000264010 COLGALT2Q8IYK4 626 aa16.31■□□□□ 0.2
CTCF-201ENST00000264010 OR4L1Q8NH43 312 aa16.31■□□□□ 0.2
CTCF-201ENST00000264010 USP13Q92995 863 aaPredicted RBP16.31■□□□□ 0.2
CTCF-201ENST00000264010 RCN3Q96D15 328 aa16.31■□□□□ 0.2
CTCF-201ENST00000264010 C20orf27Q9GZN8 174 aa16.31■□□□□ 0.2
CTCF-201ENST00000264010 MAGEH1Q9H213 219 aa16.31■□□□□ 0.2
CTCF-201ENST00000264010 WDR41Q9HAD4 459 aa16.31■□□□□ 0.2
CTCF-201ENST00000264010 MTPAPQ9NVV4 582 aaKnown RBP eCLIP16.31■□□□□ 0.2
CTCF-201ENST00000264010 MOSPD1Q9UJG1 213 aa16.31■□□□□ 0.2
CTCF-201ENST00000264010 LINC00854A0A1B0GVQ3 168 aa16.31■□□□□ 0.2
CTCF-201ENST00000264010 TBX10O75333 385 aa16.31■□□□□ 0.2
CTCF-201ENST00000264010 RPP40O75818 363 aaKnown RBP16.31■□□□□ 0.2
CTCF-201ENST00000264010 MT-CO1P00395 513 aa16.31■□□□□ 0.2
CTCF-201ENST00000264010 IMPDH2P12268 514 aa16.31■□□□□ 0.2
CTCF-201ENST00000264010 OR1D2P34982 312 aa16.31■□□□□ 0.2
CTCF-201ENST00000264010 TM4SF4P48230 202 aa16.31■□□□□ 0.2
CTCF-201ENST00000264010 GPR17Q13304 367 aa16.31■□□□□ 0.2
CTCF-201ENST00000264010 ACAP2Q15057 778 aa16.31■□□□□ 0.2
CTCF-201ENST00000264010 ALFQ53S48 1182 aa16.31■□□□□ 0.2
CTCF-201ENST00000264010 LDB1Q86U70 411 aaPredicted RBP16.31■□□□□ 0.2
CTCF-201ENST00000264010 NPAS4Q8IUM7 802 aa16.31■□□□□ 0.2
CTCF-201ENST00000264010 CARNMT1Q8N4J0 409 aa16.31■□□□□ 0.2
CTCF-201ENST00000264010 IMP4Q96G21 291 aaKnown RBP16.31■□□□□ 0.2
CTCF-201ENST00000264010 OR52B2Q96RD2 323 aa16.31■□□□□ 0.2
CTCF-201ENST00000264010 COMMD8Q9NX08 183 aa16.31■□□□□ 0.2
CTCF-201ENST00000264010 CAPN14A8MX76 684 aa16.31■□□□□ 0.2
CTCF-201ENST00000264010 RAG1P15918 1043 aa16.31■□□□□ 0.2
CTCF-201ENST00000264010 CASP2P42575 452 aa16.31■□□□□ 0.2
CTCF-201ENST00000264010 GNA12Q03113 381 aa16.31■□□□□ 0.2
CTCF-201ENST00000264010 CDH18Q13634 790 aa16.31■□□□□ 0.2
CTCF-201ENST00000264010 FAM117BQ6P1L5 589 aa16.31■□□□□ 0.2
CTCF-201ENST00000264010 LAYNQ6UX15 382 aa16.31■□□□□ 0.2
CTCF-201ENST00000264010 KBTBD2Q8IY47 623 aa16.31■□□□□ 0.2
CTCF-201ENST00000264010 EFCAB3Q8N7B9 438 aa16.31■□□□□ 0.2
CTCF-201ENST00000264010 KLHDC9Q8NEP7 349 aa16.31■□□□□ 0.2
CTCF-201ENST00000264010 TSEN34Q9BSV6 310 aaKnown RBP16.31■□□□□ 0.2
CTCF-201ENST00000264010 FAM192AQ9GZU8 254 aa16.31■□□□□ 0.2
CTCF-201ENST00000264010 CD274Q9NZQ7 290 aa16.31■□□□□ 0.2
CTCF-201ENST00000264010 VPS28Q9UK41 221 aa16.31■□□□□ 0.2
CTCF-201ENST00000264010 TRIP11Q15643 1979 aa16.31■□□□□ 0.2
CTCF-201ENST00000264010 SLC38A8A6NNN8 435 aa16.3■□□□□ 0.2
CTCF-201ENST00000264010 ARVCFO00192 962 aa16.3■□□□□ 0.2
CTCF-201ENST00000264010 TPST1O60507 370 aa16.3■□□□□ 0.2
CTCF-201ENST00000264010 CLDN11O75508 207 aa16.3■□□□□ 0.2
CTCF-201ENST00000264010 SLC35E2BP0CK96 405 aa16.3■□□□□ 0.2
CTCF-201ENST00000264010 INAQ16352 499 aa16.3■□□□□ 0.2
CTCF-201ENST00000264010 RANBP10Q6VN20 620 aa16.3■□□□□ 0.2
CTCF-201ENST00000264010 RNF148Q8N7C7 305 aa16.3■□□□□ 0.2
CTCF-201ENST00000264010 OR52K2Q8NGK3 314 aa16.3■□□□□ 0.2
CTCF-201ENST00000264010 TUBGCP3Q96CW5 907 aa16.3■□□□□ 0.2
CTCF-201ENST00000264010 FEM1CQ96JP0 617 aa16.3■□□□□ 0.2
CTCF-201ENST00000264010 S100A14Q9HCY8 104 aa16.3■□□□□ 0.2
CTCF-201ENST00000264010 SMPD4Q9NXE4 827 aa16.3■□□□□ 0.2
CTCF-201ENST00000264010 RNF186Q9NXI6 227 aa16.3■□□□□ 0.2
CTCF-201ENST00000264010 G3V2L1 256 aa16.3■□□□□ 0.2
CTCF-201ENST00000264010 PSMD12O00232 456 aaPredicted RBP16.3■□□□□ 0.2
CTCF-201ENST00000264010 TAF4O00268 1085 aa16.3■□□□□ 0.2
CTCF-201ENST00000264010 BNIP3LO60238 219 aa16.3■□□□□ 0.2
CTCF-201ENST00000264010 MFN2O95140 757 aa16.3■□□□□ 0.2
CTCF-201ENST00000264010 PAPSS2O95340 614 aaPredicted RBP16.3■□□□□ 0.2
CTCF-201ENST00000264010 FMO4P31512 558 aa16.3■□□□□ 0.2
CTCF-201ENST00000264010 RHOAP61586 193 aa16.3■□□□□ 0.2
CTCF-201ENST00000264010 NRG1Q02297 640 aaPredicted RBP16.3■□□□□ 0.2
CTCF-201ENST00000264010 LIN52Q52LA3 116 aa16.3■□□□□ 0.2
CTCF-201ENST00000264010 CLLU1OSQ5K130 101 aa16.3■□□□□ 0.2
CTCF-201ENST00000264010 PERM1Q5SV97 790 aa16.3■□□□□ 0.2
CTCF-201ENST00000264010 CUZD1Q86UP6 607 aa16.3■□□□□ 0.2
CTCF-201ENST00000264010 FBXO39Q8N4B4 442 aa16.3■□□□□ 0.2
CTCF-201ENST00000264010 PTGR2Q8N8N7 351 aaPredicted RBP16.3■□□□□ 0.2
CTCF-201ENST00000264010 ZNF333Q96JL9 665 aa16.3■□□□□ 0.2
CTCF-201ENST00000264010 BEGAINQ9BUH8 593 aa16.3■□□□□ 0.2
CTCF-201ENST00000264010 MFSD1Q9H3U5 465 aa16.3■□□□□ 0.2
CTCF-201ENST00000264010 TMCO1Q9UM00 188 aa16.3■□□□□ 0.2
CTCF-201ENST00000264010 SBF1O95248 1867 aa16.3■□□□□ 0.2
CTCF-201ENST00000264010 TMEM189-UBE2V1I3L0A0 370 aa16.3■□□□□ 0.2
CTCF-201ENST00000264010 MATN2O00339 956 aa16.3■□□□□ 0.2
CTCF-201ENST00000264010 MAGEA10P43363 369 aaPredicted RBP16.3■□□□□ 0.2
CTCF-201ENST00000264010 ATN1P54259 1190 aaPredicted RBP16.3■□□□□ 0.2
CTCF-201ENST00000264010 FAM26DQ5JW98 314 aa16.3■□□□□ 0.2
CTCF-201ENST00000264010 SIRPB2Q5JXA9 342 aa16.3■□□□□ 0.2
CTCF-201ENST00000264010 UGT3A1Q6NUS8 523 aa16.3■□□□□ 0.2
CTCF-201ENST00000264010 AFTPHQ6ULP2 937 aa16.3■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms