RNA–Protein interactions for RNA: ENST00000637988.1

SCN1A-217, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,562 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-217ENST00000637988 TXNDC11Q6PKC3 985 aa6.15□□□□□ -1.43
SCN1A-217ENST00000637988 LONP2Q86WA8 852 aa6.15□□□□□ -1.43
SCN1A-217ENST00000637988 PHF10Q8WUB8 498 aaKnown RBP6.15□□□□□ -1.43
SCN1A-217ENST00000637988 MCRS1Q96EZ8 462 aa6.15□□□□□ -1.43
SCN1A-217ENST00000637988 SYT17Q9BSW7 474 aa6.15□□□□□ -1.43
SCN1A-217ENST00000637988 GSDMCQ9BYG8 508 aa6.15□□□□□ -1.43
SCN1A-217ENST00000637988 KCNQ5Q9NR82 932 aa6.15□□□□□ -1.43
SCN1A-217ENST00000637988 SALL1Q9NSC2 1324 aa6.15□□□□□ -1.43
SCN1A-217ENST00000637988 PARP4Q9UKK3 1724 aaKnown RBP6.14□□□□□ -1.43
SCN1A-217ENST00000637988 LOC102724159A0A0B4J2E5 919 aa6.14□□□□□ -1.43
SCN1A-217ENST00000637988 SEMA3DO95025 777 aa6.14□□□□□ -1.43
SCN1A-217ENST00000637988 MAP3K6O95382 1288 aa6.14□□□□□ -1.43
SCN1A-217ENST00000637988 DPP6P42658 865 aa6.14□□□□□ -1.43
SCN1A-217ENST00000637988 HK2P52789 917 aa6.14□□□□□ -1.43
SCN1A-217ENST00000637988 SLC20A2Q08357 652 aa6.14□□□□□ -1.43
SCN1A-217ENST00000637988 NR1I3Q14994 352 aa6.14□□□□□ -1.43
SCN1A-217ENST00000637988 PWP2Q15269 919 aaKnown RBP6.14□□□□□ -1.43
SCN1A-217ENST00000637988 ARMC3Q5W041 872 aa6.14□□□□□ -1.43
SCN1A-217ENST00000637988 TAPT1Q6NXT6 567 aa6.14□□□□□ -1.43
SCN1A-217ENST00000637988 BNC2Q6ZN30 1099 aaPredicted RBP6.14□□□□□ -1.43
SCN1A-217ENST00000637988 ADHFE1Q8IWW8 467 aa6.14□□□□□ -1.43
SCN1A-217ENST00000637988 OR4A15Q8NGL6 344 aa6.14□□□□□ -1.43
SCN1A-217ENST00000637988 PTCD2Q8WV60 388 aaKnown RBP6.14□□□□□ -1.43
SCN1A-217ENST00000637988 NSMCE2Q96MF7 247 aa6.14□□□□□ -1.43
SCN1A-217ENST00000637988 KLHL4Q9C0H6 718 aa6.14□□□□□ -1.43
SCN1A-217ENST00000637988 PORCNQ9H237 461 aa6.14□□□□□ -1.43
SCN1A-217ENST00000637988 SLC35C2Q9NQQ7 365 aa6.14□□□□□ -1.43
SCN1A-217ENST00000637988 GHRLQ9UBU3 117 aa6.14□□□□□ -1.43
SCN1A-217ENST00000637988 KLQ9UEF7 1012 aa6.14□□□□□ -1.43
SCN1A-217ENST00000637988 DERAQ9Y315 318 aa6.14□□□□□ -1.43
SCN1A-217ENST00000637988 USP15Q9Y4E8 981 aaPredicted RBP6.14□□□□□ -1.43
SCN1A-217ENST00000637988 ARHGAP23Q9P227 1491 aa6.14□□□□□ -1.43
SCN1A-217ENST00000637988 A0A1B0GTH6 734 aa6.14□□□□□ -1.43
SCN1A-217ENST00000637988 H0YJX3 145 aa6.14□□□□□ -1.43
SCN1A-217ENST00000637988 EIF3HO15372 352 aaKnown RBP eCLIP6.14□□□□□ -1.436e-7■■■■□ 20.9
SCN1A-217ENST00000637988 SERPINA1P01009 418 aa6.14□□□□□ -1.43
SCN1A-217ENST00000637988 ATP1A3P13637 1013 aa6.14□□□□□ -1.43
SCN1A-217ENST00000637988 PON1P27169 355 aa6.14□□□□□ -1.43
SCN1A-217ENST00000637988 SCNN1AP37088 669 aa6.14□□□□□ -1.43
SCN1A-217ENST00000637988 GNALP38405 381 aa6.14□□□□□ -1.43
SCN1A-217ENST00000637988 CHN2P52757 468 aa6.14□□□□□ -1.43
SCN1A-217ENST00000637988 MRPS25P82663 173 aaKnown RBP6.14□□□□□ -1.43
SCN1A-217ENST00000637988 RIN1Q13671 783 aa6.14□□□□□ -1.43
SCN1A-217ENST00000637988 POMZP3Q6PJE2 187 aa6.14□□□□□ -1.43
SCN1A-217ENST00000637988 VWDEQ8N2E2 1590 aa6.14□□□□□ -1.43
SCN1A-217ENST00000637988 FBXO36Q8NEA4 188 aa6.14□□□□□ -1.43
SCN1A-217ENST00000637988 SPATA4Q8NEY3 305 aa6.14□□□□□ -1.43
SCN1A-217ENST00000637988 MAGEE2Q8TD90 523 aaPredicted RBP6.14□□□□□ -1.43
SCN1A-217ENST00000637988 C17orf62Q9BQA9 187 aa6.14□□□□□ -1.43
SCN1A-217ENST00000637988 CHID1Q9BWS9 393 aa6.14□□□□□ -1.43
SCN1A-217ENST00000637988 DNMT3AQ9Y6K1 912 aaPredicted RBP6.14□□□□□ -1.43
SCN1A-217ENST00000637988 NT5C1B-RDH14C9J2C7 533 aa6.14□□□□□ -1.43
SCN1A-217ENST00000637988 SERPINA3P01011 423 aa6.14□□□□□ -1.43
SCN1A-217ENST00000637988 NDUFS1P28331 727 aa6.14□□□□□ -1.43
SCN1A-217ENST00000637988 TIE1P35590 1138 aa6.14□□□□□ -1.43
SCN1A-217ENST00000637988 MSLNQ13421 630 aaPredicted RBP6.14□□□□□ -1.43
SCN1A-217ENST00000637988 PARP15Q460N3 678 aa6.14□□□□□ -1.43
SCN1A-217ENST00000637988 AGKQ53H12 422 aa6.14□□□□□ -1.43
SCN1A-217ENST00000637988 LDLRAP1Q5SW96 308 aa6.14□□□□□ -1.43
SCN1A-217ENST00000637988 ZNF549Q6P9A3 640 aa6.14□□□□□ -1.43
SCN1A-217ENST00000637988 ULK3Q6PHR2 472 aa6.14□□□□□ -1.43
SCN1A-217ENST00000637988 ZNF720Q7Z2F6 126 aa6.14□□□□□ -1.43
SCN1A-217ENST00000637988 SLC47A2Q86VL8 602 aa6.14□□□□□ -1.43
SCN1A-217ENST00000637988 STX12Q86Y82 276 aa6.14□□□□□ -1.43
SCN1A-217ENST00000637988 KAT5Q92993 513 aa6.14□□□□□ -1.43
SCN1A-217ENST00000637988 MS4A14Q96JA4 679 aa6.14□□□□□ -1.43
SCN1A-217ENST00000637988 BTN2A3PQ96KV6 586 aa6.14□□□□□ -1.43
SCN1A-217ENST00000637988 C9orf72Q96LT7 481 aa6.14□□□□□ -1.43
SCN1A-217ENST00000637988 FAM118BQ9BPY3 351 aa6.14□□□□□ -1.43
SCN1A-217ENST00000637988 WRAP53Q9BUR4 548 aaKnown RBP6.14□□□□□ -1.43
SCN1A-217ENST00000637988 OSBPL2Q9H1P3 480 aa6.14□□□□□ -1.43
SCN1A-217ENST00000637988 TPRKBQ9Y3C4 175 aa6.14□□□□□ -1.43
SCN1A-217ENST00000637988 PNMA8CA0A1B0GUJ8 204 aa6.14□□□□□ -1.43
SCN1A-217ENST00000637988 CCRL2O00421 344 aa6.14□□□□□ -1.43
SCN1A-217ENST00000637988 RGS20O76081 388 aa6.14□□□□□ -1.43
SCN1A-217ENST00000637988 CORO1AP31146 461 aaKnown RBP6.14□□□□□ -1.43
SCN1A-217ENST00000637988 NEK3P51956 506 aa6.14□□□□□ -1.43
SCN1A-217ENST00000637988 RRP1BQ14684 758 aaKnown RBP6.14□□□□□ -1.43
SCN1A-217ENST00000637988 LRRC36Q1X8D7 754 aa6.14□□□□□ -1.43
SCN1A-217ENST00000637988 C9orf64Q5T6V5 341 aa6.14□□□□□ -1.43
SCN1A-217ENST00000637988 BEND5Q7L4P6 421 aa6.14□□□□□ -1.43
SCN1A-217ENST00000637988 GPR141Q7Z602 305 aa6.14□□□□□ -1.43
SCN1A-217ENST00000637988 C12orf40Q86WS4 652 aa6.14□□□□□ -1.43
SCN1A-217ENST00000637988 TMEM126BQ8IUX1 230 aa6.14□□□□□ -1.43
SCN1A-217ENST00000637988 UBE2J2Q8N2K1 259 aa6.14□□□□□ -1.43
SCN1A-217ENST00000637988 ZNF786Q8N393 782 aa6.14□□□□□ -1.43
SCN1A-217ENST00000637988 OR10Q1Q8NGQ4 319 aa6.14□□□□□ -1.43
SCN1A-217ENST00000637988 TEFMQ96QE5 360 aaKnown RBP6.14□□□□□ -1.43
SCN1A-217ENST00000637988 FUT8Q9BYC5 575 aa6.14□□□□□ -1.43
SCN1A-217ENST00000637988 GJB4Q9NTQ9 266 aa6.14□□□□□ -1.43
SCN1A-217ENST00000637988 LIMD1Q9UGP4 676 aa6.14□□□□□ -1.43
SCN1A-217ENST00000637988 RRP15Q9Y3B9 282 aaKnown RBP6.14□□□□□ -1.43
SCN1A-217ENST00000637988 PTCH2Q9Y6C5 1203 aa6.14□□□□□ -1.43
SCN1A-217ENST00000637988 SGPL1O95470 568 aa6.14□□□□□ -1.43
SCN1A-217ENST00000637988 MTHFD1P11586 935 aaKnown RBP6.14□□□□□ -1.43
SCN1A-217ENST00000637988 SYN1P17600 705 aa6.14□□□□□ -1.43
SCN1A-217ENST00000637988 OXTRP30559 389 aa6.14□□□□□ -1.43
SCN1A-217ENST00000637988 GNPDA1P46926 289 aa6.14□□□□□ -1.43
SCN1A-217ENST00000637988 BCAP31P51572 246 aa6.14□□□□□ -1.43
SCN1A-217ENST00000637988 TIMM50Q3ZCQ8 353 aa6.14□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms