RNA–Protein interactions for RNA: ENST00000581631.1

SMCHD1-206, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 3

Gene SMCHD1, Length 729 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-206ENST00000581631 F2RL3Q96RI0 385 aa3.36□□□□□ -1.87
SMCHD1-206ENST00000581631 CD180Q99467 661 aa3.36□□□□□ -1.87
SMCHD1-206ENST00000581631 EYA3Q99504 573 aa3.36□□□□□ -1.87
SMCHD1-206ENST00000581631 MMTAG2Q9BU76 263 aaKnown RBP3.36□□□□□ -1.87
SMCHD1-206ENST00000581631 TAOK3Q9H2K8 898 aa3.36□□□□□ -1.87
SMCHD1-206ENST00000581631 ANKRD10Q9NXR5 420 aa3.36□□□□□ -1.87
SMCHD1-206ENST00000581631 PCDHGB5Q9Y5G0 923 aa3.36□□□□□ -1.87
SMCHD1-206ENST00000581631 ADGRF5Q8IZF2 1346 aa3.36□□□□□ -1.87
SMCHD1-206ENST00000581631 TNFSF12-TNFSF13A0A0A6YY99 330 aa3.35□□□□□ -1.87
SMCHD1-206ENST00000581631 A0A0G2JPF8 293 aa3.35□□□□□ -1.87
SMCHD1-206ENST00000581631 A0A1W2PS18 150 aa3.35□□□□□ -1.87
SMCHD1-206ENST00000581631 ARHGAP10A1A4S6 786 aa3.35□□□□□ -1.87
SMCHD1-206ENST00000581631 CBY3A6NI87 242 aa3.35□□□□□ -1.87
SMCHD1-206ENST00000581631 HNRNPCL3B7ZW38 293 aa3.35□□□□□ -1.87
SMCHD1-206ENST00000581631 IFRD1O00458 451 aaPredicted RBP3.35□□□□□ -1.87
SMCHD1-206ENST00000581631 EBAG9O00559 213 aa3.35□□□□□ -1.87
SMCHD1-206ENST00000581631 TSPAN3O60637 253 aa3.35□□□□□ -1.87
SMCHD1-206ENST00000581631 HNRNPCL1O60812 293 aaKnown RBP3.35□□□□□ -1.87
SMCHD1-206ENST00000581631 RGS11O94810 467 aa3.35□□□□□ -1.87
SMCHD1-206ENST00000581631 HNRNPCL4P0DMR1 293 aa3.35□□□□□ -1.87
SMCHD1-206ENST00000581631 ALDH4A1P30038 563 aa3.35□□□□□ -1.87
SMCHD1-206ENST00000581631 HDAC4P56524 1084 aa3.35□□□□□ -1.87
SMCHD1-206ENST00000581631 PPFIA1Q13136 1202 aa3.35□□□□□ -1.87
SMCHD1-206ENST00000581631 PPIGQ13427 754 aaKnown RBP eCLIP3.35□□□□□ -1.87
SMCHD1-206ENST00000581631 MAP3K21Q5TCX8 1036 aa3.35□□□□□ -1.87
SMCHD1-206ENST00000581631 ATG16L1Q676U5 607 aa3.35□□□□□ -1.87
SMCHD1-206ENST00000581631 C17orf99Q6UX52 265 aa3.35□□□□□ -1.87
SMCHD1-206ENST00000581631 ZSCAN2Q7Z7L9 614 aaPredicted RBP3.35□□□□□ -1.87
SMCHD1-206ENST00000581631 NFE4Q86UQ8 179 aa3.35□□□□□ -1.87
SMCHD1-206ENST00000581631 SFTPA2Q8IWL1 248 aa3.35□□□□□ -1.87
SMCHD1-206ENST00000581631 LSM14AQ8ND56 463 aaKnown RBP3.35□□□□□ -1.87
SMCHD1-206ENST00000581631 OR13A1Q8NGR1 328 aa3.35□□□□□ -1.87
SMCHD1-206ENST00000581631 RUFY2Q8WXA3 655 aa3.35□□□□□ -1.87
SMCHD1-206ENST00000581631 C3orf30Q96M34 536 aa3.35□□□□□ -1.87
SMCHD1-206ENST00000581631 EGFL8Q99944 293 aa3.35□□□□□ -1.87
SMCHD1-206ENST00000581631 PHF7Q9BWX1 381 aaPredicted RBP3.35□□□□□ -1.87
SMCHD1-206ENST00000581631 NUF2Q9BZD4 464 aa3.35□□□□□ -1.87
SMCHD1-206ENST00000581631 BARHL1Q9BZE3 327 aa3.35□□□□□ -1.87
SMCHD1-206ENST00000581631 TTYH1Q9H313 450 aaPredicted RBP3.35□□□□□ -1.87
SMCHD1-206ENST00000581631 RIC8AQ9NPQ8 531 aa3.35□□□□□ -1.87
SMCHD1-206ENST00000581631 C1RLQ9NZP8 487 aa3.35□□□□□ -1.87
SMCHD1-206ENST00000581631 CTNNAL1Q9UBT7 734 aa3.35□□□□□ -1.87
SMCHD1-206ENST00000581631 NDRG3Q9UGV2 375 aa3.35□□□□□ -1.87
SMCHD1-206ENST00000581631 NOL12Q9UGY1 213 aaKnown RBP eCLIP3.35□□□□□ -1.87
SMCHD1-206ENST00000581631 VDAC3Q9Y277 283 aa3.35□□□□□ -1.87
SMCHD1-206ENST00000581631 PAM16Q9Y3D7 125 aa3.35□□□□□ -1.87
SMCHD1-206ENST00000581631 SNX9Q9Y5X1 595 aa3.35□□□□□ -1.87
SMCHD1-206ENST00000581631 NOTCH2Q04721 2471 aa3.34□□□□□ -1.87
SMCHD1-206ENST00000581631 HSPB2A8KAH6 182 aa3.34□□□□□ -1.87
SMCHD1-206ENST00000581631 EIF3FO00303 357 aaPredicted RBP3.34□□□□□ -1.87
SMCHD1-206ENST00000581631 HLA-DOBP13765 273 aa3.34□□□□□ -1.87
SMCHD1-206ENST00000581631 ZNF8P17098 575 aaPredicted RBP3.34□□□□□ -1.87
SMCHD1-206ENST00000581631 SRD5A1P18405 259 aa3.34□□□□□ -1.87
SMCHD1-206ENST00000581631 EDN2P20800 178 aa3.34□□□□□ -1.87
SMCHD1-206ENST00000581631 RYKP34925 604 aa3.34□□□□□ -1.87
SMCHD1-206ENST00000581631 PIGAP37287 484 aa3.34□□□□□ -1.87
SMCHD1-206ENST00000581631 BLKP51451 505 aa3.34□□□□□ -1.87
SMCHD1-206ENST00000581631 UBE3AQ05086 875 aa3.34□□□□□ -1.87
SMCHD1-206ENST00000581631 HSPB2Q16082 182 aa3.34□□□□□ -1.87
SMCHD1-206ENST00000581631 ESCO2Q56NI9 601 aa3.34□□□□□ -1.87
SMCHD1-206ENST00000581631 ZNF667Q5HYK9 610 aa3.34□□□□□ -1.87
SMCHD1-206ENST00000581631 WDR45BQ5MNZ6 344 aa3.34□□□□□ -1.87
SMCHD1-206ENST00000581631 ZC2HC1BQ5TFG8 222 aa3.34□□□□□ -1.87
SMCHD1-206ENST00000581631 BBS12Q6ZW61 710 aa3.34□□□□□ -1.87
SMCHD1-206ENST00000581631 SLC9B2Q86UD5 537 aa3.34□□□□□ -1.87
SMCHD1-206ENST00000581631 FAM160B2Q86V87 743 aa3.34□□□□□ -1.87
SMCHD1-206ENST00000581631 CPOQ8IVL8 374 aa3.34□□□□□ -1.87
SMCHD1-206ENST00000581631 PARP16Q8N5Y8 322 aa3.34□□□□□ -1.87
SMCHD1-206ENST00000581631 GRAPLQ8TC17 118 aaPredicted RBP3.34□□□□□ -1.87
SMCHD1-206ENST00000581631 LGALS12Q96DT0 336 aa3.34□□□□□ -1.87
SMCHD1-206ENST00000581631 ELP4Q96EB1 424 aa3.34□□□□□ -1.87
SMCHD1-206ENST00000581631 ALG14Q96F25 216 aa3.34□□□□□ -1.87
SMCHD1-206ENST00000581631 C17orf77Q96MU5 243 aa3.34□□□□□ -1.87
SMCHD1-206ENST00000581631 CYSLTR2Q9NS75 346 aa3.34□□□□□ -1.87
SMCHD1-206ENST00000581631 PEMTQ9UBM1 199 aa3.34□□□□□ -1.87
SMCHD1-206ENST00000581631 HSF4Q9ULV5 492 aa3.34□□□□□ -1.87
SMCHD1-206ENST00000581631 LILRA5A6NI73 299 aa3.33□□□□□ -1.88
SMCHD1-206ENST00000581631 KRTAP16-1A8MUX0 517 aa3.33□□□□□ -1.88
SMCHD1-206ENST00000581631 KLRF2D3W0D1 207 aa3.33□□□□□ -1.88
SMCHD1-206ENST00000581631 CRLF1O75462 422 aa3.33□□□□□ -1.88
SMCHD1-206ENST00000581631 RFPL2O75678 378 aa3.33□□□□□ -1.88
SMCHD1-206ENST00000581631 SLC2A4P14672 509 aa3.33□□□□□ -1.88
SMCHD1-206ENST00000581631 CCR5P51681 352 aa3.33□□□□□ -1.88
SMCHD1-206ENST00000581631 CLDN2P57739 230 aa3.33□□□□□ -1.88
SMCHD1-206ENST00000581631 LMO4P61968 165 aa3.33□□□□□ -1.88
SMCHD1-206ENST00000581631 YWHAZP63104 245 aaKnown RBP3.33□□□□□ -1.88
SMCHD1-206ENST00000581631 ARHGEF6Q15052 776 aa3.33□□□□□ -1.88
SMCHD1-206ENST00000581631 SLC1A5Q15758 541 aa3.33□□□□□ -1.88
SMCHD1-206ENST00000581631 EFNB3Q15768 340 aa3.33□□□□□ -1.88
SMCHD1-206ENST00000581631 NFIL3Q16649 462 aa3.33□□□□□ -1.88
SMCHD1-206ENST00000581631 SOWAHAQ2M3V2 549 aa3.33□□□□□ -1.88
SMCHD1-206ENST00000581631 LRRC8EQ6NSJ5 796 aa3.33□□□□□ -1.88
SMCHD1-206ENST00000581631 SHFQ7M4L6 423 aa3.33□□□□□ -1.88
SMCHD1-206ENST00000581631 TBC1D26Q86UD7 250 aa3.33□□□□□ -1.88
SMCHD1-206ENST00000581631 ANKRD18AQ8IVF6 992 aa3.33□□□□□ -1.88
SMCHD1-206ENST00000581631 KIAA2013Q8IYS2 634 aa3.33□□□□□ -1.88
SMCHD1-206ENST00000581631 PLD5Q8N7P1 536 aa3.33□□□□□ -1.88
SMCHD1-206ENST00000581631 GJC3Q8NFK1 279 aa3.33□□□□□ -1.88
SMCHD1-206ENST00000581631 CREB3L4Q8TEY5 395 aa3.33□□□□□ -1.88
SMCHD1-206ENST00000581631 HERVK_113Q902F9 699 aa3.33□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms