RNA–Protein interactions for RNA: ENST00000572334.6

VPS53-213, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 561 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-213ENST00000572334 ARSDP51689 593 aa6.75□□□□□ -1.33
VPS53-213ENST00000572334 UCNP55089 124 aa6.75□□□□□ -1.33
VPS53-213ENST00000572334 KIAA1024LP59773 190 aa6.75□□□□□ -1.33
VPS53-213ENST00000572334 TPI1P60174 286 aa6.75□□□□□ -1.33
VPS53-213ENST00000572334 MYL5Q02045 173 aa6.75□□□□□ -1.33
VPS53-213ENST00000572334 RHDQ02161 417 aa6.75□□□□□ -1.33
VPS53-213ENST00000572334 UBXN1Q04323 297 aa6.75□□□□□ -1.33
VPS53-213ENST00000572334 ZFP36L1Q07352 338 aaKnown RBP6.75□□□□□ -1.33
VPS53-213ENST00000572334 NSUN2Q08J23 767 aaKnown RBP eCLIP6.75□□□□□ -1.33
VPS53-213ENST00000572334 DPYSQ14117 519 aa6.75□□□□□ -1.33
VPS53-213ENST00000572334 SPIDRQ14159 915 aa6.75□□□□□ -1.33
VPS53-213ENST00000572334 HLTFQ14527 1009 aaKnown RBP eCLIP6.75□□□□□ -1.33
VPS53-213ENST00000572334 IHHQ14623 411 aa6.75□□□□□ -1.33
VPS53-213ENST00000572334 PTPRRQ15256 657 aa6.75□□□□□ -1.33
VPS53-213ENST00000572334 ELOCQ15369 112 aa6.75□□□□□ -1.33
VPS53-213ENST00000572334 TGIF1Q15583 401 aa6.75□□□□□ -1.33
VPS53-213ENST00000572334 TEX35Q5T0J7 233 aa6.75□□□□□ -1.33
VPS53-213ENST00000572334 ERMARDQ5T6L9 678 aa6.75□□□□□ -1.33
VPS53-213ENST00000572334 KIAA1614Q5VZ46 1190 aa6.75□□□□□ -1.33
VPS53-213ENST00000572334 BRAT1Q6PJG6 821 aa6.75□□□□□ -1.33
VPS53-213ENST00000572334 RFX8Q6ZV50 586 aa6.75□□□□□ -1.33
VPS53-213ENST00000572334 ZNF571Q7Z3V5 609 aaPredicted RBP6.75□□□□□ -1.33
VPS53-213ENST00000572334 RD3Q7Z3Z2 195 aa6.75□□□□□ -1.33
VPS53-213ENST00000572334 C17orf82Q86X59 251 aaPredicted RBP6.75□□□□□ -1.33
VPS53-213ENST00000572334 NRROSQ86YC3 692 aa6.75□□□□□ -1.33
VPS53-213ENST00000572334 PGBD5Q8N414 524 aa6.75□□□□□ -1.33
VPS53-213ENST00000572334 WDR48Q8TAF3 677 aa6.75□□□□□ -1.33
VPS53-213ENST00000572334 SPOCK2Q92563 424 aa6.75□□□□□ -1.33
VPS53-213ENST00000572334 GLMNQ92990 594 aa6.75□□□□□ -1.33
VPS53-213ENST00000572334 COQ10AQ96MF6 247 aa6.75□□□□□ -1.33
VPS53-213ENST00000572334 WDR92Q96MX6 357 aa6.75□□□□□ -1.33
VPS53-213ENST00000572334 TUBGCP5Q96RT8 1024 aa6.75□□□□□ -1.33
VPS53-213ENST00000572334 C1QTNF7Q9BXJ2 289 aa6.75□□□□□ -1.33
VPS53-213ENST00000572334 TMEM168Q9H0V1 697 aa6.75□□□□□ -1.33
VPS53-213ENST00000572334 LRRN3Q9H3W5 708 aa6.75□□□□□ -1.33
VPS53-213ENST00000572334 DHX35Q9H5Z1 703 aaKnown RBP6.75□□□□□ -1.33
VPS53-213ENST00000572334 SEPT11Q9NVA2 429 aaKnown RBP6.75□□□□□ -1.33
VPS53-213ENST00000572334 ETNK2Q9NVF9 386 aa6.75□□□□□ -1.33
VPS53-213ENST00000572334 CWC15Q9P013 229 aaKnown RBP6.75□□□□□ -1.33
VPS53-213ENST00000572334 PCSK1NQ9UHG2 260 aa6.75□□□□□ -1.33
VPS53-213ENST00000572334 APPL1Q9UKG1 709 aa6.75□□□□□ -1.33
VPS53-213ENST00000572334 ACSL6Q9UKU0 697 aa6.75□□□□□ -1.33
VPS53-213ENST00000572334 ATXN7L1Q9ULK2 861 aaPredicted RBP6.75□□□□□ -1.33
VPS53-213ENST00000572334 GPR34Q9UPC5 381 aa6.75□□□□□ -1.33
VPS53-213ENST00000572334 MAST4O15021 2626 aa6.75□□□□□ -1.33
VPS53-213ENST00000572334 HECTD1Q9ULT8 2610 aa6.75□□□□□ -1.33
VPS53-213ENST00000572334 LRRC53A6NM62 1247 aa6.74□□□□□ -1.33
VPS53-213ENST00000572334 TMCO5BA8MYB1 307 aa6.74□□□□□ -1.33
VPS53-213ENST00000572334 EEF2KO00418 725 aaKnown RBP6.74□□□□□ -1.33
VPS53-213ENST00000572334 DDX3XO00571 662 aaKnown RBP eCLIP6.74□□□□□ -1.33
VPS53-213ENST00000572334 PLD2O14939 933 aa6.74□□□□□ -1.33
VPS53-213ENST00000572334 HTRA2O43464 458 aaPredicted RBP6.74□□□□□ -1.33
VPS53-213ENST00000572334 B4GAT1O43505 415 aa6.74□□□□□ -1.33
VPS53-213ENST00000572334 LRCH4O75427 683 aa6.74□□□□□ -1.33
VPS53-213ENST00000572334 PALMO75781 387 aa6.74□□□□□ -1.33
VPS53-213ENST00000572334 RPLP0P05388 317 aaKnown RBP6.74□□□□□ -1.33
VPS53-213ENST00000572334 ALPIP09923 528 aa6.74□□□□□ -1.33
VPS53-213ENST00000572334 CTSEP14091 401 aa6.74□□□□□ -1.33
VPS53-213ENST00000572334 FERP16591 822 aa6.74□□□□□ -1.33
VPS53-213ENST00000572334 WT1P19544 449 aaPredicted RBP6.74□□□□□ -1.33
VPS53-213ENST00000572334 ITIH1P19827 911 aa6.74□□□□□ -1.33
VPS53-213ENST00000572334 LHCGRP22888 699 aa6.74□□□□□ -1.33
VPS53-213ENST00000572334 PSMA2P25787 234 aa6.74□□□□□ -1.33
VPS53-213ENST00000572334 CALRP27797 417 aaKnown RBP6.74□□□□□ -1.33
VPS53-213ENST00000572334 RBMS1P29558 406 aaKnown RBP6.74□□□□□ -1.33
VPS53-213ENST00000572334 SLC5A2P31639 672 aa6.74□□□□□ -1.33
VPS53-213ENST00000572334 PRKCIP41743 596 aa6.74□□□□□ -1.33
VPS53-213ENST00000572334 HCAR3P49019 387 aa6.74□□□□□ -1.33
VPS53-213ENST00000572334 BLKP51451 505 aa6.74□□□□□ -1.33
VPS53-213ENST00000572334 B4GALNT1Q00973 533 aa6.74□□□□□ -1.33
VPS53-213ENST00000572334 IL10RBQ08334 325 aa6.74□□□□□ -1.33
VPS53-213ENST00000572334 SLC10A7Q0GE19 358 aa6.74□□□□□ -1.33
VPS53-213ENST00000572334 GRM3Q14832 879 aa6.74□□□□□ -1.33
VPS53-213ENST00000572334 CNGA3Q16281 694 aa6.74□□□□□ -1.33
VPS53-213ENST00000572334 LINC00303Q3SY05 128 aa6.74□□□□□ -1.33
VPS53-213ENST00000572334 TAF1BQ53T94 588 aaPredicted RBP6.74□□□□□ -1.33
VPS53-213ENST00000572334 CERCAMQ5T4B2 595 aa6.74□□□□□ -1.33
VPS53-213ENST00000572334 BROXQ5VW32 411 aa6.74□□□□□ -1.33
VPS53-213ENST00000572334 TXNRD3NBQ6F5E7 133 aa6.74□□□□□ -1.33
VPS53-213ENST00000572334 ESRP1Q6NXG1 681 aaKnown RBP6.74□□□□□ -1.33
VPS53-213ENST00000572334 DCUN1D2Q6PH85 259 aa6.74□□□□□ -1.33
VPS53-213ENST00000572334 FOXR1Q6PIV2 292 aa6.74□□□□□ -1.33
VPS53-213ENST00000572334 ZNF574Q6ZN55 896 aaPredicted RBP6.74□□□□□ -1.33
VPS53-213ENST00000572334 DPPA4Q7L190 304 aa6.74□□□□□ -1.33
VPS53-213ENST00000572334 SPRED1Q7Z699 444 aa6.74□□□□□ -1.33
VPS53-213ENST00000572334 ZNF605Q86T29 641 aa6.74□□□□□ -1.33
VPS53-213ENST00000572334 GKN2Q86XP6 184 aa6.74□□□□□ -1.33
VPS53-213ENST00000572334 SLITRK4Q8IW52 837 aa6.74□□□□□ -1.33
VPS53-213ENST00000572334 EXD3Q8N9H8 876 aa6.74□□□□□ -1.33
VPS53-213ENST00000572334 OR56A4Q8NGH8 313 aa6.74□□□□□ -1.33
VPS53-213ENST00000572334 FNIP1Q8TF40 1166 aa6.74□□□□□ -1.33
VPS53-213ENST00000572334 SMIM14Q96QK8 99 aa6.74□□□□□ -1.33
VPS53-213ENST00000572334 PSKH2Q96QS6 385 aa6.74□□□□□ -1.33
VPS53-213ENST00000572334 NCAPGQ9BPX3 1015 aa6.74□□□□□ -1.33
VPS53-213ENST00000572334 HAUS4Q9H6D7 363 aa6.74□□□□□ -1.33
VPS53-213ENST00000572334 ATP13A3Q9H7F0 1226 aa6.74□□□□□ -1.33
VPS53-213ENST00000572334 ANO10Q9NW15 660 aa6.74□□□□□ -1.33
VPS53-213ENST00000572334 B4GALT6Q9UBX8 382 aa6.74□□□□□ -1.33
VPS53-213ENST00000572334 KLQ9UEF7 1012 aa6.74□□□□□ -1.33
VPS53-213ENST00000572334 PCDHGA7Q9Y5G6 932 aa6.74□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms