RNA–Protein interactions for RNA: ENST00000571805.5

VPS53-211, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,356 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-211ENST00000571805 SH3GL3Q99963 347 aa22.84■■□□□ 1.25
VPS53-211ENST00000571805 GPC4O75487 556 aa22.84■■□□□ 1.25
VPS53-211ENST00000571805 TBX18O95935 607 aa22.84■■□□□ 1.25
VPS53-211ENST00000571805 SNRPB2P08579 225 aaKnown RBP22.84■■□□□ 1.25
VPS53-211ENST00000571805 YWHAQP27348 245 aa22.84■■□□□ 1.25
VPS53-211ENST00000571805 ACVR1Q04771 509 aa22.84■■□□□ 1.25
VPS53-211ENST00000571805 IL23RQ5VWK5 629 aa22.84■■□□□ 1.25
VPS53-211ENST00000571805 CLEC6AQ6EIG7 209 aa22.84■■□□□ 1.25
VPS53-211ENST00000571805 ZNF549Q6P9A3 640 aa22.84■■□□□ 1.25
VPS53-211ENST00000571805 TRIB2Q92519 343 aa22.84■■□□□ 1.25
VPS53-211ENST00000571805 FUBP3Q96I24 572 aaKnown RBP eCLIP22.84■■□□□ 1.25
VPS53-211ENST00000571805 PCDHAC1Q9H158 963 aa22.84■■□□□ 1.25
VPS53-211ENST00000571805 POLR3BQ9NW08 1133 aaPredicted RBP22.84■■□□□ 1.25
VPS53-211ENST00000571805 CRYL1Q9Y2S2 319 aa22.84■■□□□ 1.25
VPS53-211ENST00000571805 C8BP07358 591 aa22.83■■□□□ 1.25
VPS53-211ENST00000571805 TSPAN8P19075 237 aa22.83■■□□□ 1.25
VPS53-211ENST00000571805 NFKB2Q00653 900 aa22.83■■□□□ 1.25
VPS53-211ENST00000571805 UGT3A2Q3SY77 523 aa22.83■■□□□ 1.25
VPS53-211ENST00000571805 FAM45BPQ6NSW5 357 aa22.83■■□□□ 1.25
VPS53-211ENST00000571805 ATP6V0D2Q8N8Y2 350 aa22.83■■□□□ 1.25
VPS53-211ENST00000571805 SNX31Q8N9S9 440 aa22.83■■□□□ 1.25
VPS53-211ENST00000571805 FAM45AQ8TCE6 357 aa22.83■■□□□ 1.25
VPS53-211ENST00000571805 TOP1MTQ969P6 601 aa22.83■■□□□ 1.25
VPS53-211ENST00000571805 ATP6V1E2Q96A05 226 aa22.83■■□□□ 1.25
VPS53-211ENST00000571805 BTN2A3PQ96KV6 586 aa22.83■■□□□ 1.25
VPS53-211ENST00000571805 TBATAQ96M53 351 aa22.83■■□□□ 1.25
VPS53-211ENST00000571805 MRPL40Q9NQ50 206 aaKnown RBP22.83■■□□□ 1.25
VPS53-211ENST00000571805 IL37Q9NZH6 218 aa22.83■■□□□ 1.25
VPS53-211ENST00000571805 CD300AQ9UGN4 299 aa22.83■■□□□ 1.25
VPS53-211ENST00000571805 GJB3O75712 270 aa22.83■■□□□ 1.24
VPS53-211ENST00000571805 SUPT7LO94864 414 aa22.83■■□□□ 1.24
VPS53-211ENST00000571805 FDXRP22570 491 aa22.83■■□□□ 1.24
VPS53-211ENST00000571805 ZNF157P51786 506 aaPredicted RBP22.83■■□□□ 1.24
VPS53-211ENST00000571805 CDKL1Q00532 357 aa22.83■■□□□ 1.24
VPS53-211ENST00000571805 DSC1Q08554 894 aa22.83■■□□□ 1.24
VPS53-211ENST00000571805 RAP1GAP2Q684P5 730 aa22.83■■□□□ 1.24
VPS53-211ENST00000571805 C8orf82Q6P1X6 216 aaPredicted RBP22.83■■□□□ 1.24
VPS53-211ENST00000571805 ZNF354CQ86Y25 554 aa22.83■■□□□ 1.24
VPS53-211ENST00000571805 IFNL1Q8IU54 200 aa22.83■■□□□ 1.24
VPS53-211ENST00000571805 RGS18Q9NS28 235 aa22.83■■□□□ 1.24
VPS53-211ENST00000571805 EPS15L1Q9UBC2 864 aa22.83■■□□□ 1.24
VPS53-211ENST00000571805 PRORSD1PA6NEY8 169 aa22.82■■□□□ 1.24
VPS53-211ENST00000571805 DRGXA6NNA5 263 aa22.82■■□□□ 1.24
VPS53-211ENST00000571805 CD1DP15813 335 aa22.82■■□□□ 1.24
VPS53-211ENST00000571805 ETFBP38117 255 aa22.82■■□□□ 1.24
VPS53-211ENST00000571805 IL10RBQ08334 325 aa22.82■■□□□ 1.24
VPS53-211ENST00000571805 TRIM71Q2Q1W2 868 aaKnown RBP22.82■■□□□ 1.24
VPS53-211ENST00000571805 RTN4RL1Q86UN2 441 aaPredicted RBP22.82■■□□□ 1.24
VPS53-211ENST00000571805 SATL1Q86VE3 508 aa22.82■■□□□ 1.24
VPS53-211ENST00000571805 C3orf30Q96M34 536 aa22.82■■□□□ 1.24
VPS53-211ENST00000571805 SLC25A23Q9BV35 468 aa22.82■■□□□ 1.24
VPS53-211ENST00000571805 CNOT11Q9UKZ1 510 aaKnown RBP22.82■■□□□ 1.24
VPS53-211ENST00000571805 HERVK_113P63132 956 aa22.82■■□□□ 1.24
VPS53-211ENST00000571805 SERINC3Q13530 473 aa22.82■■□□□ 1.24
VPS53-211ENST00000571805 KCNA10Q16322 511 aa22.82■■□□□ 1.24
VPS53-211ENST00000571805 NFE2Q16621 373 aaPredicted RBP22.82■■□□□ 1.24
VPS53-211ENST00000571805 FAM26DQ5JW98 314 aa22.82■■□□□ 1.24
VPS53-211ENST00000571805 GPR152Q8TDT2 470 aa22.82■■□□□ 1.24
VPS53-211ENST00000571805 ERVK-6Q9BXR3 956 aa22.82■■□□□ 1.24
VPS53-211ENST00000571805 EPB41L1Q9H4G0 881 aa22.82■■□□□ 1.24
VPS53-211ENST00000571805 FBRSL1Q9HCM7 1045 aaKnown RBP22.82■■□□□ 1.24
VPS53-211ENST00000571805 ATP4BP51164 291 aa22.81■■□□□ 1.24
VPS53-211ENST00000571805 RHDQ02161 417 aa22.81■■□□□ 1.24
VPS53-211ENST00000571805 TRAP1Q12931 704 aaKnown RBP22.81■■□□□ 1.24
VPS53-211ENST00000571805 GK3PQ14409 553 aa22.81■■□□□ 1.24
VPS53-211ENST00000571805 PTPRCAPQ14761 206 aa22.81■■□□□ 1.24
VPS53-211ENST00000571805 POLD3Q15054 466 aaPredicted RBP22.81■■□□□ 1.24
VPS53-211ENST00000571805 TRIP4Q15650 581 aaPredicted RBP22.81■■□□□ 1.24
VPS53-211ENST00000571805 GALNT4Q8N4A0 578 aa22.81■■□□□ 1.24
VPS53-211ENST00000571805 OR52K2Q8NGK3 314 aa22.81■■□□□ 1.24
VPS53-211ENST00000571805 OR9I1Q8NGQ6 314 aa22.81■■□□□ 1.24
VPS53-211ENST00000571805 LPGAT1Q92604 370 aa22.81■■□□□ 1.24
VPS53-211ENST00000571805 SPAG4Q9NPE6 437 aa22.81■■□□□ 1.24
VPS53-211ENST00000571805 TMEM181Q9P2C4 612 aa22.81■■□□□ 1.24
VPS53-211ENST00000571805 AP4S1Q9Y587 144 aa22.81■■□□□ 1.24
VPS53-211ENST00000571805 SLC4A7Q9Y6M7 1214 aa22.81■■□□□ 1.24
VPS53-211ENST00000571805 ATP6AP2A0A1C7CYW4 349 aa22.81■■□□□ 1.24
VPS53-211ENST00000571805 NRP2O60462 931 aa22.81■■□□□ 1.24
VPS53-211ENST00000571805 ATP6AP2O75787 350 aa22.81■■□□□ 1.24
VPS53-211ENST00000571805 PGM3O95394 542 aa22.81■■□□□ 1.24
VPS53-211ENST00000571805 GOT2P00505 430 aaKnown RBP22.81■■□□□ 1.24
VPS53-211ENST00000571805 ZNF26P17031 533 aaPredicted RBP22.81■■□□□ 1.24
VPS53-211ENST00000571805 RALGDSQ12967 914 aa22.81■■□□□ 1.24
VPS53-211ENST00000571805 TRIM32Q13049 653 aa22.81■■□□□ 1.24
VPS53-211ENST00000571805 SEMA3AQ14563 771 aa22.81■■□□□ 1.24
VPS53-211ENST00000571805 MGAT5BQ3V5L5 792 aa22.81■■□□□ 1.24
VPS53-211ENST00000571805 MFSD14CQ5VZR4 134 aa22.81■■□□□ 1.24
VPS53-211ENST00000571805 CIR1Q86X95 450 aaPredicted RBP22.81■■□□□ 1.24
VPS53-211ENST00000571805 FUNDC1Q8IVP5 155 aa22.81■■□□□ 1.24
VPS53-211ENST00000571805 TTC9BQ8N6N2 239 aa22.81■■□□□ 1.24
VPS53-211ENST00000571805 GPR150Q8NGU9 434 aa22.81■■□□□ 1.24
VPS53-211ENST00000571805 SEMA3CQ99985 751 aa22.81■■□□□ 1.24
VPS53-211ENST00000571805 ARL5AQ9Y689 179 aa22.81■■□□□ 1.24
VPS53-211ENST00000571805 SMIM31A0A1B0GVY4 71 aa22.8■■□□□ 1.24
VPS53-211ENST00000571805 FAM92AA1XBS5 289 aa22.8■■□□□ 1.24
VPS53-211ENST00000571805 MRASO14807 208 aa22.8■■□□□ 1.24
VPS53-211ENST00000571805 MUSKO15146 869 aa22.8■■□□□ 1.24
VPS53-211ENST00000571805 SEPT4O43236 478 aa22.8■■□□□ 1.24
VPS53-211ENST00000571805 RAMP2O60895 175 aa22.8■■□□□ 1.24
VPS53-211ENST00000571805 MT-CO1P00395 513 aa22.8■■□□□ 1.24
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms