RNA–Protein interactions for RNA: ENST00000568497.6

CLN3-235, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 758 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-235ENST00000568497 NYAP1Q6ZVC0 841 aa13.99□□□□□ -0.17
CLN3-235ENST00000568497 USP30Q70CQ3 517 aa13.99□□□□□ -0.17
CLN3-235ENST00000568497 DSG4Q86SJ6 1040 aa13.99□□□□□ -0.17
CLN3-235ENST00000568497 NT5DC3Q86UY8 548 aa13.99□□□□□ -0.17
CLN3-235ENST00000568497 TMIEQ8NEW7 156 aa13.99□□□□□ -0.17
CLN3-235ENST00000568497 PDCD6IPQ8WUM4 868 aaKnown RBP13.99□□□□□ -0.17
CLN3-235ENST00000568497 ISG20Q96AZ6 181 aaKnown RBP13.99□□□□□ -0.17
CLN3-235ENST00000568497 ARHGAP9Q9BRR9 750 aa13.99□□□□□ -0.17
CLN3-235ENST00000568497 MAK16Q9BXY0 300 aaKnown RBP13.99□□□□□ -0.17
CLN3-235ENST00000568497 POLR1BQ9H9Y6 1135 aa13.99□□□□□ -0.17
CLN3-235ENST00000568497 NOD2Q9HC29 1040 aa13.99□□□□□ -0.17
CLN3-235ENST00000568497 LUC7LQ9NQ29 371 aaKnown RBP13.99□□□□□ -0.17
CLN3-235ENST00000568497 DYRK4Q9NR20 520 aa13.99□□□□□ -0.17
CLN3-235ENST00000568497 PCDHGC4Q9Y5F7 938 aa13.99□□□□□ -0.17
CLN3-235ENST00000568497 SPTAN1Q13813 2472 aaKnown RBP13.98□□□□□ -0.17
CLN3-235ENST00000568497 hCG_1818297A0A087WSY0 165 aa13.98□□□□□ -0.17
CLN3-235ENST00000568497 ZSCAN5CA6NGD5 496 aaPredicted RBP13.98□□□□□ -0.17
CLN3-235ENST00000568497 ALOX15BO15296 676 aa13.98□□□□□ -0.17
CLN3-235ENST00000568497 DDX3YO15523 660 aaKnown RBP13.98□□□□□ -0.17
CLN3-235ENST00000568497 PSTPIP1O43586 416 aa13.98□□□□□ -0.17
CLN3-235ENST00000568497 PLRG1O43660 514 aaKnown RBP13.98□□□□□ -0.17
CLN3-235ENST00000568497 MMP20O60882 483 aa13.98□□□□□ -0.17
CLN3-235ENST00000568497 SDC3O75056 442 aa13.98□□□□□ -0.17
CLN3-235ENST00000568497 POP4O95707 220 aaKnown RBP13.98□□□□□ -0.17
CLN3-235ENST00000568497 PYGMP11217 842 aa13.98□□□□□ -0.17
CLN3-235ENST00000568497 MMP13P45452 471 aa13.98□□□□□ -0.17
CLN3-235ENST00000568497 RXRGP48443 463 aa13.98□□□□□ -0.17
CLN3-235ENST00000568497 LSSP48449 732 aa13.98□□□□□ -0.17
CLN3-235ENST00000568497 NIPAL4Q0D2K0 466 aa13.98□□□□□ -0.17
CLN3-235ENST00000568497 AP1B1Q10567 949 aa13.98□□□□□ -0.17
CLN3-235ENST00000568497 TRAF2Q12933 501 aa13.98□□□□□ -0.17
CLN3-235ENST00000568497 HS1BP3Q53T59 392 aa13.98□□□□□ -0.17
CLN3-235ENST00000568497 INO80DQ53TQ3 878 aaPredicted RBP13.98□□□□□ -0.17
CLN3-235ENST00000568497 ZNF805Q5CZA5 627 aa13.98□□□□□ -0.17
CLN3-235ENST00000568497 LRRC38Q5VT99 294 aa13.98□□□□□ -0.17
CLN3-235ENST00000568497 SLC9A4Q6AI14 798 aa13.98□□□□□ -0.17
CLN3-235ENST00000568497 ZC3H18Q86VM9 953 aaKnown RBP13.98□□□□□ -0.17
CLN3-235ENST00000568497 MAP7D3Q8IWC1 876 aa13.98□□□□□ -0.17
CLN3-235ENST00000568497 KATNAL2Q8IYT4 538 aa13.98□□□□□ -0.17
CLN3-235ENST00000568497 LZTR1Q8N653 840 aa13.98□□□□□ -0.17
CLN3-235ENST00000568497 OR2T34Q8NGX1 318 aa13.98□□□□□ -0.17
CLN3-235ENST00000568497 KIAA1524Q8TCG1 905 aa13.98□□□□□ -0.17
CLN3-235ENST00000568497 CCDC114Q96M63 670 aa13.98□□□□□ -0.17
CLN3-235ENST00000568497 RETREG1Q9H6L5 497 aa13.98□□□□□ -0.17
CLN3-235ENST00000568497 RBM22Q9NW64 420 aaKnown RBP eCLIP13.98□□□□□ -0.17
CLN3-235ENST00000568497 RCOR3Q9P2K3 495 aaPredicted RBP13.98□□□□□ -0.17
CLN3-235ENST00000568497 SEPT3Q9UH03 358 aa13.98□□□□□ -0.17
CLN3-235ENST00000568497 FADS3Q9Y5Q0 445 aa13.98□□□□□ -0.17
CLN3-235ENST00000568497 LRRK1Q38SD2 2015 aa13.97□□□□□ -0.17
CLN3-235ENST00000568497 A0A1W2PR77 199 aa13.97□□□□□ -0.17
CLN3-235ENST00000568497 IGLON5A6NGN9 336 aa13.97□□□□□ -0.17
CLN3-235ENST00000568497 LRRC72A6NJI9 287 aa13.97□□□□□ -0.17
CLN3-235ENST00000568497 BTNL10A8MVZ5 291 aa13.97□□□□□ -0.17
CLN3-235ENST00000568497 CSO75390 466 aaKnown RBP13.97□□□□□ -0.17
CLN3-235ENST00000568497 CTPS1P17812 591 aa13.97□□□□□ -0.17
CLN3-235ENST00000568497 ITGB7P26010 798 aa13.97□□□□□ -0.17
CLN3-235ENST00000568497 CTNNA1P35221 906 aaKnown RBP13.97□□□□□ -0.17
CLN3-235ENST00000568497 SERPINB6P35237 376 aa13.97□□□□□ -0.17
CLN3-235ENST00000568497 PEX5P50542 639 aa13.97□□□□□ -0.17
CLN3-235ENST00000568497 NEK3P51956 506 aa13.97□□□□□ -0.17
CLN3-235ENST00000568497 GEMIN4P57678 1058 aaKnown RBP13.97□□□□□ -0.17
CLN3-235ENST00000568497 TAZQ16635 292 aa13.97□□□□□ -0.17
CLN3-235ENST00000568497 SLC45A4Q5BKX6 768 aa13.97□□□□□ -0.17
CLN3-235ENST00000568497 C3orf38Q5JPI3 329 aa13.97□□□□□ -0.17
CLN3-235ENST00000568497 KANSL1Q7Z3B3 1105 aa13.97□□□□□ -0.17
CLN3-235ENST00000568497 PEX26Q7Z412 305 aa13.97□□□□□ -0.17
CLN3-235ENST00000568497 KDELC2Q7Z4H8 507 aa13.97□□□□□ -0.17
CLN3-235ENST00000568497 TTC7BQ86TV6 843 aa13.97□□□□□ -0.17
CLN3-235ENST00000568497 OXR1Q8N573 874 aa13.97□□□□□ -0.17
CLN3-235ENST00000568497 EXD3Q8N9H8 876 aa13.97□□□□□ -0.17
CLN3-235ENST00000568497 SEMA3CQ99985 751 aa13.97□□□□□ -0.17
CLN3-235ENST00000568497 SUV39H2Q9H5I1 410 aa13.97□□□□□ -0.17
CLN3-235ENST00000568497 ERVMER34-1Q9H9K5 563 aa13.97□□□□□ -0.17
CLN3-235ENST00000568497 ASCL3Q9NQ33 180 aa13.97□□□□□ -0.17
CLN3-235ENST00000568497 TRMT1Q9NXH9 659 aaKnown RBP13.97□□□□□ -0.17
CLN3-235ENST00000568497 DDX56Q9NY93 547 aaKnown RBP13.97□□□□□ -0.17
CLN3-235ENST00000568497 FZD4Q9ULV1 537 aa13.97□□□□□ -0.17
CLN3-235ENST00000568497 PCDHA3Q9Y5H8 950 aa13.97□□□□□ -0.17
CLN3-235ENST00000568497 SIGLEC6O43699 453 aa13.96□□□□□ -0.17
CLN3-235ENST00000568497 ZRANB2O95218 330 aaKnown RBP eCLIP13.96□□□□□ -0.17
CLN3-235ENST00000568497 PTMAP06454 111 aaKnown RBP13.96□□□□□ -0.17
CLN3-235ENST00000568497 CTNNA2P26232 953 aa13.96□□□□□ -0.17
CLN3-235ENST00000568497 RBMS1P29558 406 aaKnown RBP13.96□□□□□ -0.17
CLN3-235ENST00000568497 ZNF135P52742 658 aaPredicted RBP13.96□□□□□ -0.17
CLN3-235ENST00000568497 UBAP2LQ14157 1087 aaKnown RBP13.96□□□□□ -0.17
CLN3-235ENST00000568497 ZNF284Q2VY69 593 aa13.96□□□□□ -0.17
CLN3-235ENST00000568497 PROX2Q3B8N5 592 aa13.96□□□□□ -0.17
CLN3-235ENST00000568497 C4orf17Q53FE4 359 aa13.96□□□□□ -0.17
CLN3-235ENST00000568497 MARC1Q5VT66 337 aa13.96□□□□□ -0.17
CLN3-235ENST00000568497 RFLNAQ6ZTI6 216 aa13.96□□□□□ -0.17
CLN3-235ENST00000568497 CCDC13Q8IYE1 715 aa13.96□□□□□ -0.17
CLN3-235ENST00000568497 PAF1Q8N7H5 531 aa13.96□□□□□ -0.17
CLN3-235ENST00000568497 CNTD1Q8N815 330 aa13.96□□□□□ -0.17
CLN3-235ENST00000568497 FUBP1Q96AE4 644 aaKnown RBP13.96□□□□□ -0.17
CLN3-235ENST00000568497 FAM131CQ96AQ9 280 aa13.96□□□□□ -0.17
CLN3-235ENST00000568497 CCDC97Q96F63 343 aaPredicted RBP13.96□□□□□ -0.17
CLN3-235ENST00000568497 SERAC1Q96JX3 654 aa13.96□□□□□ -0.17
CLN3-235ENST00000568497 AGAP3Q96P47 875 aa13.96□□□□□ -0.17
CLN3-235ENST00000568497 HDAC8Q9BY41 377 aa13.96□□□□□ -0.17
CLN3-235ENST00000568497 PCDH12Q9NPG4 1184 aa13.96□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 55.7 ms