RNA–Protein interactions for RNA: ENST00000568191.1

VPS35-207, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 520 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-207ENST00000568191 MID1O15344 667 aa2.88□□□□□ -1.95
VPS35-207ENST00000568191 PLRG1O43660 514 aaKnown RBP2.88□□□□□ -1.95
VPS35-207ENST00000568191 NBNO60934 754 aa2.88□□□□□ -1.95
VPS35-207ENST00000568191 NDUFS7O75251 213 aa2.88□□□□□ -1.95
VPS35-207ENST00000568191 SLC22A3O75751 556 aa2.88□□□□□ -1.95
VPS35-207ENST00000568191 CAVIN2O95810 425 aa2.88□□□□□ -1.95
VPS35-207ENST00000568191 LDHAP00338 332 aaKnown RBP2.88□□□□□ -1.95
VPS35-207ENST00000568191 MMP2P08253 660 aa2.88□□□□□ -1.95
VPS35-207ENST00000568191 ETFAP13804 333 aa2.88□□□□□ -1.95
VPS35-207ENST00000568191 GLIPR1P48060 266 aa2.88□□□□□ -1.95
VPS35-207ENST00000568191 CLCNKAP51800 687 aa2.88□□□□□ -1.95
VPS35-207ENST00000568191 CRIP2P52943 208 aaPredicted RBP2.88□□□□□ -1.95
VPS35-207ENST00000568191 DVL1P1P54792 670 aaPredicted RBP2.88□□□□□ -1.95
VPS35-207ENST00000568191 PITX1P78337 314 aaPredicted RBP2.88□□□□□ -1.95
VPS35-207ENST00000568191 PMP22Q01453 160 aa2.88□□□□□ -1.95
VPS35-207ENST00000568191 CHRNDQ07001 517 aa2.88□□□□□ -1.95
VPS35-207ENST00000568191 SLC20A2Q08357 652 aa2.88□□□□□ -1.95
VPS35-207ENST00000568191 TAF5Q15542 800 aa2.88□□□□□ -1.95
VPS35-207ENST00000568191 SETMARQ53H47 684 aaPredicted RBP2.88□□□□□ -1.95
VPS35-207ENST00000568191 KCNT1Q5JUK3 1230 aa2.88□□□□□ -1.95
VPS35-207ENST00000568191 FBXO47Q5MNV8 452 aa2.88□□□□□ -1.95
VPS35-207ENST00000568191 WDR45BQ5MNZ6 344 aa2.88□□□□□ -1.95
VPS35-207ENST00000568191 PDSS1Q5T2R2 415 aa2.88□□□□□ -1.95
VPS35-207ENST00000568191 RGMBQ6NW40 437 aa2.88□□□□□ -1.95
VPS35-207ENST00000568191 C19orf48Q6RUI8 117 aa2.88□□□□□ -1.95
VPS35-207ENST00000568191 C17orf99Q6UX52 265 aa2.88□□□□□ -1.95
VPS35-207ENST00000568191 SMIM29Q86T20 159 aa2.88□□□□□ -1.95
VPS35-207ENST00000568191 WDSUB1Q8N9V3 476 aa2.88□□□□□ -1.95
VPS35-207ENST00000568191 BEST2Q8NFU1 509 aa2.88□□□□□ -1.95
VPS35-207ENST00000568191 TTC14Q96N46 770 aa2.88□□□□□ -1.95
VPS35-207ENST00000568191 BBS4Q96RK4 519 aa2.88□□□□□ -1.95
VPS35-207ENST00000568191 RPS6KC1Q96S38 1066 aa2.88□□□□□ -1.95
VPS35-207ENST00000568191 TRMT61BQ9BVS5 477 aaKnown RBP2.88□□□□□ -1.95
VPS35-207ENST00000568191 NUF2Q9BZD4 464 aa2.88□□□□□ -1.95
VPS35-207ENST00000568191 LMAN2LQ9H0V9 348 aa2.88□□□□□ -1.95
VPS35-207ENST00000568191 KIAA1456Q9P272 454 aa2.88□□□□□ -1.95
VPS35-207ENST00000568191 CNOT7Q9UIV1 285 aaKnown RBP2.88□□□□□ -1.95
VPS35-207ENST00000568191 GAB2Q9UQC2 676 aa2.88□□□□□ -1.95
VPS35-207ENST00000568191 AMDHD2Q9Y303 409 aa2.88□□□□□ -1.95
VPS35-207ENST00000568191 PABPN1LA6NDY0 278 aaKnown RBP2.87□□□□□ -1.95
VPS35-207ENST00000568191 CBY3A6NI87 242 aa2.87□□□□□ -1.95
VPS35-207ENST00000568191 FAM90A7PA6NKC0 464 aa2.87□□□□□ -1.95
VPS35-207ENST00000568191 FAM90A22PA8MWA6 464 aa2.87□□□□□ -1.95
VPS35-207ENST00000568191 FAM90A12PA8MX19 464 aa2.87□□□□□ -1.95
VPS35-207ENST00000568191 FAM90A23PA8MXZ1 464 aa2.87□□□□□ -1.95
VPS35-207ENST00000568191 B9A039 149 aa2.87□□□□□ -1.95
VPS35-207ENST00000568191 MT-CYBP00156 380 aaPredicted RBP2.87□□□□□ -1.95
VPS35-207ENST00000568191 PGM1P36871 562 aa2.87□□□□□ -1.95
VPS35-207ENST00000568191 HSD17B4P51659 736 aa2.87□□□□□ -1.95
VPS35-207ENST00000568191 CLCN3P51790 818 aa2.87□□□□□ -1.95
VPS35-207ENST00000568191 FUT6P51993 359 aa2.87□□□□□ -1.95
VPS35-207ENST00000568191 PDE1BQ01064 536 aa2.87□□□□□ -1.95
VPS35-207ENST00000568191 PPP2R5BQ15173 497 aa2.87□□□□□ -1.95
VPS35-207ENST00000568191 EFNB3Q15768 340 aa2.87□□□□□ -1.95
VPS35-207ENST00000568191 NAA35Q5VZE5 725 aa2.87□□□□□ -1.95
VPS35-207ENST00000568191 PLA2G4FQ68DD2 849 aa2.87□□□□□ -1.95
VPS35-207ENST00000568191 METTL2BQ6P1Q9 378 aaKnown RBP2.87□□□□□ -1.95
VPS35-207ENST00000568191 KCTD18Q6PI47 426 aaPredicted RBP2.87□□□□□ -1.95
VPS35-207ENST00000568191 SLC36A4Q6YBV0 504 aa2.87□□□□□ -1.95
VPS35-207ENST00000568191 B3GNT6Q6ZMB0 384 aa2.87□□□□□ -1.95
VPS35-207ENST00000568191 TAOK1Q7L7X3 1001 aa2.87□□□□□ -1.95
VPS35-207ENST00000568191 LINGO2Q7L985 606 aa2.87□□□□□ -1.95
VPS35-207ENST00000568191 KMT5CQ86Y97 462 aa2.87□□□□□ -1.95
VPS35-207ENST00000568191 TMTC1Q8IUR5 882 aa2.87□□□□□ -1.95
VPS35-207ENST00000568191 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP2.87□□□□□ -1.95
VPS35-207ENST00000568191 RNF113BQ8IZP6 322 aaKnown RBP2.87□□□□□ -1.95
VPS35-207ENST00000568191 METTL2AQ96IZ6 378 aaKnown RBP2.87□□□□□ -1.95
VPS35-207ENST00000568191 ZSCAN31Q96LW9 406 aaPredicted RBP2.87□□□□□ -1.95
VPS35-207ENST00000568191 PGLYRP2Q96PD5 576 aa2.87□□□□□ -1.95
VPS35-207ENST00000568191 EYA3Q99504 573 aa2.87□□□□□ -1.95
VPS35-207ENST00000568191 REEP2Q9BRK0 252 aa2.87□□□□□ -1.95
VPS35-207ENST00000568191 LRRC1Q9BTT6 524 aa2.87□□□□□ -1.95
VPS35-207ENST00000568191 BARHL1Q9BZE3 327 aa2.87□□□□□ -1.95
VPS35-207ENST00000568191 FBRSL1Q9HCM7 1045 aaKnown RBP2.87□□□□□ -1.95
VPS35-207ENST00000568191 SNTG1Q9NSN8 517 aa2.87□□□□□ -1.95
VPS35-207ENST00000568191 ZFP57Q9NU63 452 aa2.87□□□□□ -1.95
VPS35-207ENST00000568191 KCNS2Q9ULS6 477 aa2.87□□□□□ -1.95
VPS35-207ENST00000568191 TTC7AQ9ULT0 858 aaPredicted RBP2.87□□□□□ -1.95
VPS35-207ENST00000568191 PCDHGB3Q9Y5G1 929 aa2.87□□□□□ -1.95
VPS35-207ENST00000568191 COMMD10Q9Y6G5 202 aa2.87□□□□□ -1.95
VPS35-207ENST00000568191 TEX22C9J3V5 150 aa2.86□□□□□ -1.95
VPS35-207ENST00000568191 BCAT2O15382 392 aaPredicted RBP2.86□□□□□ -1.95
VPS35-207ENST00000568191 EDIL3O43854 480 aa2.86□□□□□ -1.95
VPS35-207ENST00000568191 IFIT1P09914 478 aaKnown RBP2.86□□□□□ -1.95
VPS35-207ENST00000568191 CDH1P12830 882 aa2.86□□□□□ -1.95
VPS35-207ENST00000568191 GABRB2P47870 512 aa2.86□□□□□ -1.95
VPS35-207ENST00000568191 HOXA1P49639 335 aaPredicted RBP2.86□□□□□ -1.95
VPS35-207ENST00000568191 NFIL3Q16649 462 aa2.86□□□□□ -1.95
VPS35-207ENST00000568191 MMEL1Q495T6 779 aa2.86□□□□□ -1.95
VPS35-207ENST00000568191 GPATCH4Q5T3I0 446 aaKnown RBP2.86□□□□□ -1.95
VPS35-207ENST00000568191 LRRC8DQ7L1W4 858 aa2.86□□□□□ -1.95
VPS35-207ENST00000568191 SLC9B2Q86UD5 537 aa2.86□□□□□ -1.95
VPS35-207ENST00000568191 NFE4Q86UQ8 179 aa2.86□□□□□ -1.95
VPS35-207ENST00000568191 HERC6Q8IVU3 1022 aa2.86□□□□□ -1.95
VPS35-207ENST00000568191 TBC1D20Q96BZ9 403 aa2.86□□□□□ -1.95
VPS35-207ENST00000568191 CLSTN3Q9BQT9 956 aa2.86□□□□□ -1.95
VPS35-207ENST00000568191 H2AFJQ9BTM1 129 aa2.86□□□□□ -1.95
VPS35-207ENST00000568191 NDST4Q9H3R1 872 aa2.86□□□□□ -1.95
VPS35-207ENST00000568191 PLEKHA5Q9HAU0 1116 aa2.86□□□□□ -1.95
VPS35-207ENST00000568191 MAGEE1Q9HCI5 957 aa2.86□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms