RNA–Protein interactions for RNA: ENST00000559119.1

VPS13C-208, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 738 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-208ENST00000559119 SEC61BP60468 96 aaKnown RBP4.43□□□□□ -1.7
VPS13C-208ENST00000559119 MMEL1Q495T6 779 aa4.43□□□□□ -1.7
VPS13C-208ENST00000559119 MAP9Q49MG5 647 aa4.43□□□□□ -1.7
VPS13C-208ENST00000559119 KIAA2013Q8IYS2 634 aa4.43□□□□□ -1.7
VPS13C-208ENST00000559119 SLC20A1Q8WUM9 679 aa4.43□□□□□ -1.7
VPS13C-208ENST00000559119 POF1BQ8WVV4 589 aa4.43□□□□□ -1.7
VPS13C-208ENST00000559119 ALG14Q96F25 216 aa4.43□□□□□ -1.7
VPS13C-208ENST00000559119 ZNF583Q96ND8 569 aa4.43□□□□□ -1.7
VPS13C-208ENST00000559119 ZNF570Q96NI8 536 aa4.43□□□□□ -1.7
VPS13C-208ENST00000559119 MXRA8Q9BRK3 442 aa4.43□□□□□ -1.7
VPS13C-208ENST00000559119 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP4.43□□□□□ -1.7
VPS13C-208ENST00000559119 STN1Q9H668 368 aaKnown RBP4.43□□□□□ -1.7
VPS13C-208ENST00000559119 EPHX3Q9H6B9 360 aa4.43□□□□□ -1.7
VPS13C-208ENST00000559119 PMS2P5A8MQ11 134 aa4.42□□□□□ -1.7
VPS13C-208ENST00000559119 PER2O15055 1255 aa4.42□□□□□ -1.7
VPS13C-208ENST00000559119 RGMBQ6NW40 437 aa4.42□□□□□ -1.7
VPS13C-208ENST00000559119 GFRALQ6UXV0 394 aa4.42□□□□□ -1.7
VPS13C-208ENST00000559119 TMEM219Q86XT9 240 aa4.42□□□□□ -1.7
VPS13C-208ENST00000559119 KRTAP7-1Q8IUC3 87 aa4.42□□□□□ -1.7
VPS13C-208ENST00000559119 ZNF248Q8NDW4 579 aa4.42□□□□□ -1.7
VPS13C-208ENST00000559119 CD180Q99467 661 aa4.42□□□□□ -1.7
VPS13C-208ENST00000559119 CLSTN3Q9BQT9 956 aa4.42□□□□□ -1.7
VPS13C-208ENST00000559119 PLCB1Q9NQ66 1216 aa4.42□□□□□ -1.7
VPS13C-208ENST00000559119 FAM118AQ9NWS6 357 aa4.42□□□□□ -1.7
VPS13C-208ENST00000559119 ALKBH4Q9NXW9 302 aa4.42□□□□□ -1.7
VPS13C-208ENST00000559119 RCOR1Q9UKL0 485 aa4.42□□□□□ -1.7
VPS13C-208ENST00000559119 FAF1Q9UNN5 650 aaPredicted RBP4.42□□□□□ -1.7
VPS13C-208ENST00000559119 DNAJC16Q9Y2G8 782 aa4.42□□□□□ -1.7
VPS13C-208ENST00000559119 PABPN1LA6NDY0 278 aaKnown RBP4.41□□□□□ -1.7
VPS13C-208ENST00000559119 PEX12O00623 359 aa4.41□□□□□ -1.7
VPS13C-208ENST00000559119 CLCNKAP51800 687 aa4.41□□□□□ -1.7
VPS13C-208ENST00000559119 PDSS1Q5T2R2 415 aa4.41□□□□□ -1.7
VPS13C-208ENST00000559119 TRNP1Q6NT89 227 aa4.41□□□□□ -1.7
VPS13C-208ENST00000559119 C17orf99Q6UX52 265 aa4.41□□□□□ -1.7
VPS13C-208ENST00000559119 SLC36A4Q6YBV0 504 aa4.41□□□□□ -1.7
VPS13C-208ENST00000559119 FAM160B2Q86V87 743 aa4.41□□□□□ -1.7
VPS13C-208ENST00000559119 WDR63Q8IWG1 891 aa4.41□□□□□ -1.7
VPS13C-208ENST00000559119 CEP70Q8NHQ1 597 aa4.41□□□□□ -1.7
VPS13C-208ENST00000559119 PPM1EQ8WY54 764 aa4.41□□□□□ -1.7
VPS13C-208ENST00000559119 SIN3AQ96ST3 1273 aa4.41□□□□□ -1.7
VPS13C-208ENST00000559119 HAUS8Q9BT25 410 aa4.41□□□□□ -1.7
VPS13C-208ENST00000559119 LRRC1Q9BTT6 524 aa4.41□□□□□ -1.7
VPS13C-208ENST00000559119 NUF2Q9BZD4 464 aa4.41□□□□□ -1.7
VPS13C-208ENST00000559119 FKRPQ9H9S5 495 aa4.41□□□□□ -1.7
VPS13C-208ENST00000559119 NOD2Q9HC29 1040 aa4.41□□□□□ -1.7
VPS13C-208ENST00000559119 BABAM1Q9NWV8 329 aa4.41□□□□□ -1.7
VPS13C-208ENST00000559119 TINAGQ9UJW2 476 aa4.41□□□□□ -1.7
VPS13C-208ENST00000559119 PADI1Q9ULC6 663 aa4.41□□□□□ -1.7
VPS13C-208ENST00000559119 CARD8Q9Y2G2 431 aa4.41□□□□□ -1.7
VPS13C-208ENST00000559119 AMDHD2Q9Y303 409 aa4.41□□□□□ -1.7
VPS13C-208ENST00000559119 SH2D7A6NKC9 451 aaPredicted RBP4.4□□□□□ -1.71
VPS13C-208ENST00000559119 KLK8O60259 260 aa4.4□□□□□ -1.71
VPS13C-208ENST00000559119 TERF1P54274 439 aa4.4□□□□□ -1.71
VPS13C-208ENST00000559119 CLDN2P57739 230 aa4.4□□□□□ -1.71
VPS13C-208ENST00000559119 KRTAP10-3P60369 221 aa4.4□□□□□ -1.71
VPS13C-208ENST00000559119 CHRNDQ07001 517 aa4.4□□□□□ -1.71
VPS13C-208ENST00000559119 PPIGQ13427 754 aaKnown RBP eCLIP4.4□□□□□ -1.71
VPS13C-208ENST00000559119 TRIM14Q14142 442 aa4.4□□□□□ -1.71
VPS13C-208ENST00000559119 NAA25Q14CX7 972 aa4.4□□□□□ -1.71
VPS13C-208ENST00000559119 ZNF876PQ49A33 203 aa4.4□□□□□ -1.71
VPS13C-208ENST00000559119 LCE3CQ5T5A8 94 aa4.4□□□□□ -1.71
VPS13C-208ENST00000559119 KCTD8Q6ZWB6 473 aa4.4□□□□□ -1.71
VPS13C-208ENST00000559119 TAOK1Q7L7X3 1001 aa4.4□□□□□ -1.71
VPS13C-208ENST00000559119 CHERPQ8IWX8 916 aaKnown RBP4.4□□□□□ -1.71
VPS13C-208ENST00000559119 RNF113BQ8IZP6 322 aaKnown RBP4.4□□□□□ -1.71
VPS13C-208ENST00000559119 CADM4Q8NFZ8 388 aa4.4□□□□□ -1.71
VPS13C-208ENST00000559119 ABTB1Q969K4 478 aaPredicted RBP4.4□□□□□ -1.71
VPS13C-208ENST00000559119 ANKRD9Q96BM1 317 aaPredicted RBP4.4□□□□□ -1.71
VPS13C-208ENST00000559119 LITAFQ99732 161 aa4.4□□□□□ -1.71
VPS13C-208ENST00000559119 MROH8Q9H579 483 aa4.4□□□□□ -1.71
VPS13C-208ENST00000559119 TMEM30AQ9NV96 361 aa4.4□□□□□ -1.71
VPS13C-208ENST00000559119 TAF1P21675 1872 aa4.4□□□□□ -1.71
VPS13C-208ENST00000559119 TUBBP07437 444 aa4.39□□□□□ -1.71
VPS13C-208ENST00000559119 G6PDP11413 515 aa4.39□□□□□ -1.71
VPS13C-208ENST00000559119 ETFAP13804 333 aa4.39□□□□□ -1.71
VPS13C-208ENST00000559119 ITGA2P17301 1181 aa4.39□□□□□ -1.71
VPS13C-208ENST00000559119 S1PR1P21453 382 aa4.39□□□□□ -1.71
VPS13C-208ENST00000559119 TUBB4BP68371 445 aa4.39□□□□□ -1.71
VPS13C-208ENST00000559119 PRKG1Q13976 671 aa4.39□□□□□ -1.71
VPS13C-208ENST00000559119 SLC1A5Q15758 541 aa4.39□□□□□ -1.71
VPS13C-208ENST00000559119 ADCK5Q3MIX3 580 aa4.39□□□□□ -1.71
VPS13C-208ENST00000559119 SYCP2LQ5T4T6 812 aa4.39□□□□□ -1.71
VPS13C-208ENST00000559119 LRRC8EQ6NSJ5 796 aa4.39□□□□□ -1.71
VPS13C-208ENST00000559119 ZNF852Q6ZMS4 543 aa4.39□□□□□ -1.71
VPS13C-208ENST00000559119 OR10V1Q8NGI7 309 aa4.39□□□□□ -1.71
VPS13C-208ENST00000559119 FBXL8Q96CD0 374 aa4.39□□□□□ -1.71
VPS13C-208ENST00000559119 LGALS12Q96DT0 336 aa4.39□□□□□ -1.71
VPS13C-208ENST00000559119 TWNKQ96RR1 684 aa4.39□□□□□ -1.71
VPS13C-208ENST00000559119 FAM167BQ9BTA0 163 aa4.39□□□□□ -1.71
VPS13C-208ENST00000559119 ZNF700Q9H0M5 742 aa4.39□□□□□ -1.71
VPS13C-208ENST00000559119 GOLGA6L9A6NEM1 432 aa4.38□□□□□ -1.71
VPS13C-208ENST00000559119 FAM90A7PA6NKC0 464 aa4.38□□□□□ -1.71
VPS13C-208ENST00000559119 FAM90A22PA8MWA6 464 aa4.38□□□□□ -1.71
VPS13C-208ENST00000559119 FAM90A12PA8MX19 464 aa4.38□□□□□ -1.71
VPS13C-208ENST00000559119 FAM90A23PA8MXZ1 464 aa4.38□□□□□ -1.71
VPS13C-208ENST00000559119 EXTL3O43909 919 aa4.38□□□□□ -1.71
VPS13C-208ENST00000559119 VEGFAP15692 232 aaPredicted RBP4.38□□□□□ -1.71
VPS13C-208ENST00000559119 RRM1P23921 792 aa4.38□□□□□ -1.71
VPS13C-208ENST00000559119 EIF2S3P41091 472 aaKnown RBP4.38□□□□□ -1.71
VPS13C-208ENST00000559119 HOXA1P49639 335 aaPredicted RBP4.38□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 66.6 ms