RNA–Protein interactions for RNA: ENST00000553437.1

CCDC88C-206, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 550 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-206ENST00000553437 ZNF548Q8NEK5 533 aaPredicted RBP10.31□□□□□ -0.76
CCDC88C-206ENST00000553437 SCRN2Q96FV2 425 aa10.31□□□□□ -0.76
CCDC88C-206ENST00000553437 OLFM3Q96PB7 478 aa10.31□□□□□ -0.76
CCDC88C-206ENST00000553437 SMIM14Q96QK8 99 aa10.31□□□□□ -0.76
CCDC88C-206ENST00000553437 LGMNQ99538 433 aa10.31□□□□□ -0.76
CCDC88C-206ENST00000553437 IL12RB2Q99665 862 aa10.31□□□□□ -0.76
CCDC88C-206ENST00000553437 APOOQ9BUR5 198 aa10.31□□□□□ -0.76
CCDC88C-206ENST00000553437 POLR1EQ9GZS1 481 aaKnown RBP10.31□□□□□ -0.76
CCDC88C-206ENST00000553437 DDX56Q9NY93 547 aaKnown RBP10.31□□□□□ -0.76
CCDC88C-206ENST00000553437 NLGN3Q9NZ94 848 aa10.31□□□□□ -0.76
CCDC88C-206ENST00000553437 RAI2Q9Y5P3 530 aa10.31□□□□□ -0.76
CCDC88C-206ENST00000553437 CSNK1G3Q9Y6M4 447 aa10.31□□□□□ -0.76
CCDC88C-206ENST00000553437 U3KQA8 63 aa10.31□□□□□ -0.76
CCDC88C-206ENST00000553437 DMXL2Q8TDJ6 3036 aa10.31□□□□□ -0.76
CCDC88C-206ENST00000553437 NPIPB15A6NHN6 443 aaPredicted RBP10.3□□□□□ -0.76
CCDC88C-206ENST00000553437 K7ESM1 405 aa10.3□□□□□ -0.76
CCDC88C-206ENST00000553437 KCNK1O00180 336 aa10.3□□□□□ -0.76
CCDC88C-206ENST00000553437 APOL1O14791 398 aa10.3□□□□□ -0.76
CCDC88C-206ENST00000553437 FFAR2O15552 330 aa10.3□□□□□ -0.76
CCDC88C-206ENST00000553437 PSTPIP1O43586 416 aa10.3□□□□□ -0.76
CCDC88C-206ENST00000553437 GCATO75600 419 aa10.3□□□□□ -0.76
CCDC88C-206ENST00000553437 JCHAINP01591 159 aa10.3□□□□□ -0.76
CCDC88C-206ENST00000553437 PCCBP05166 539 aa10.3□□□□□ -0.76
CCDC88C-206ENST00000553437 MMP2P08253 660 aa10.3□□□□□ -0.76
CCDC88C-206ENST00000553437 ELFN1P0C7U0 828 aa10.3□□□□□ -0.76
CCDC88C-206ENST00000553437 MYF5P13349 255 aa10.3□□□□□ -0.76
CCDC88C-206ENST00000553437 TNNT1P13805 278 aa10.3□□□□□ -0.76
CCDC88C-206ENST00000553437 ZFXP17010 805 aaPredicted RBP10.3□□□□□ -0.76
CCDC88C-206ENST00000553437 LHCGRP22888 699 aa10.3□□□□□ -0.76
CCDC88C-206ENST00000553437 VIPR1P32241 457 aa10.3□□□□□ -0.76
CCDC88C-206ENST00000553437 TRIM23P36406 574 aa10.3□□□□□ -0.76
CCDC88C-206ENST00000553437 MARCKSL1P49006 195 aa10.3□□□□□ -0.76
CCDC88C-206ENST00000553437 THOP1P52888 689 aa10.3□□□□□ -0.76
CCDC88C-206ENST00000553437 IFI35P80217 286 aaPredicted RBP10.3□□□□□ -0.76
CCDC88C-206ENST00000553437 ADCY2Q08462 1091 aa10.3□□□□□ -0.76
CCDC88C-206ENST00000553437 ITKQ08881 620 aa10.3□□□□□ -0.76
CCDC88C-206ENST00000553437 ZBTB17Q13105 803 aa10.3□□□□□ -0.76
CCDC88C-206ENST00000553437 ILKQ13418 452 aa10.3□□□□□ -0.76
CCDC88C-206ENST00000553437 MTM1Q13496 603 aa10.3□□□□□ -0.76
CCDC88C-206ENST00000553437 NFATC4Q14934 902 aa10.3□□□□□ -0.76
CCDC88C-206ENST00000553437 CCDC157Q569K6 752 aa10.3□□□□□ -0.76
CCDC88C-206ENST00000553437 ARMC12Q5T9G4 340 aa10.3□□□□□ -0.76
CCDC88C-206ENST00000553437 KCTD16Q68DU8 428 aa10.3□□□□□ -0.76
CCDC88C-206ENST00000553437 C11orf63Q6NUN7 778 aa10.3□□□□□ -0.76
CCDC88C-206ENST00000553437 NPNTQ6UXI9 565 aa10.3□□□□□ -0.76
CCDC88C-206ENST00000553437 HSD11B1LQ7Z5J1 315 aa10.3□□□□□ -0.76
CCDC88C-206ENST00000553437 TSPAN33Q86UF1 283 aa10.3□□□□□ -0.76
CCDC88C-206ENST00000553437 RFX6Q8HWS3 928 aa10.3□□□□□ -0.76
CCDC88C-206ENST00000553437 TMEM139Q8IV31 216 aa10.3□□□□□ -0.76
CCDC88C-206ENST00000553437 PHACTR4Q8IZ21 702 aa10.3□□□□□ -0.76
CCDC88C-206ENST00000553437 PAF1Q8N7H5 531 aa10.3□□□□□ -0.76
CCDC88C-206ENST00000553437 FAM181AQ8N9Y4 354 aa10.3□□□□□ -0.76
CCDC88C-206ENST00000553437 CCNYQ8ND76 341 aa10.3□□□□□ -0.76
CCDC88C-206ENST00000553437 TPCN2Q8NHX9 752 aa10.3□□□□□ -0.76
CCDC88C-206ENST00000553437 PDCD6IPQ8WUM4 868 aaKnown RBP10.3□□□□□ -0.76
CCDC88C-206ENST00000553437 BTN2A2Q8WVV5 523 aa10.3□□□□□ -0.76
CCDC88C-206ENST00000553437 FUBP1Q96AE4 644 aaKnown RBP10.3□□□□□ -0.76
CCDC88C-206ENST00000553437 TBATAQ96M53 351 aa10.3□□□□□ -0.76
CCDC88C-206ENST00000553437 TDRD1Q9BXT4 1180 aaKnown RBP10.3□□□□□ -0.76
CCDC88C-206ENST00000553437 MAK16Q9BXY0 300 aaKnown RBP10.3□□□□□ -0.76
CCDC88C-206ENST00000553437 CLPBQ9H078 707 aa10.3□□□□□ -0.76
CCDC88C-206ENST00000553437 OR1A2Q9Y585 309 aa10.3□□□□□ -0.76
CCDC88C-206ENST00000553437 HEY1Q9Y5J3 304 aa10.3□□□□□ -0.76
CCDC88C-206ENST00000553437 DUSP10Q9Y6W6 482 aa10.3□□□□□ -0.76
CCDC88C-206ENST00000553437 LOC400499M0QZD8 3231 aa10.3□□□□□ -0.76
CCDC88C-206ENST00000553437 DOCK9Q9BZ29 2069 aa10.3□□□□□ -0.76
CCDC88C-206ENST00000553437 TMEM131Q92545 1883 aa10.3□□□□□ -0.76
CCDC88C-206ENST00000553437 COL5A1P20908 1838 aaPredicted RBP10.29□□□□□ -0.76
CCDC88C-206ENST00000553437 A0A0U1RQS6 177 aa10.29□□□□□ -0.76
CCDC88C-206ENST00000553437 FAM149AA5PLN7 773 aa10.29□□□□□ -0.76
CCDC88C-206ENST00000553437 NEMP2A6NFY4 417 aa10.29□□□□□ -0.76
CCDC88C-206ENST00000553437 BTNL10A8MVZ5 291 aa10.29□□□□□ -0.76
CCDC88C-206ENST00000553437 H3BM21 787 aa10.29□□□□□ -0.76
CCDC88C-206ENST00000553437 TPP1O14773 563 aa10.29□□□□□ -0.76
CCDC88C-206ENST00000553437 AQP9O43315 295 aa10.29□□□□□ -0.76
CCDC88C-206ENST00000553437 HOXC4P09017 264 aaPredicted RBP10.29□□□□□ -0.76
CCDC88C-206ENST00000553437 ALPIP09923 528 aa10.29□□□□□ -0.76
CCDC88C-206ENST00000553437 CYP2A6P11509 494 aaPredicted RBP10.29□□□□□ -0.76
CCDC88C-206ENST00000553437 CDK4P11802 303 aa10.29□□□□□ -0.76
CCDC88C-206ENST00000553437 CKMT1AP12532 417 aa10.29□□□□□ -0.76
CCDC88C-206ENST00000553437 KRT10P13645 584 aa10.29□□□□□ -0.76
CCDC88C-206ENST00000553437 CTPS1P17812 591 aa10.29□□□□□ -0.76
CCDC88C-206ENST00000553437 HNF1BP35680 557 aa10.29□□□□□ -0.76
CCDC88C-206ENST00000553437 CLDN6P56747 220 aa10.29□□□□□ -0.76
CCDC88C-206ENST00000553437 DYNLT1P63172 113 aa10.29□□□□□ -0.76
CCDC88C-206ENST00000553437 SKOR1P84550 965 aa10.29□□□□□ -0.76
CCDC88C-206ENST00000553437 PPARDQ03181 441 aa10.29□□□□□ -0.76
CCDC88C-206ENST00000553437 C1orf61Q13536 156 aa10.29□□□□□ -0.76
CCDC88C-206ENST00000553437 CAMK2BQ13554 666 aa10.29□□□□□ -0.76
CCDC88C-206ENST00000553437 ACOX1Q15067 660 aa10.29□□□□□ -0.76
CCDC88C-206ENST00000553437 PDK1Q15118 436 aa10.29□□□□□ -0.76
CCDC88C-206ENST00000553437 ALG11Q2TAA5 492 aa10.29□□□□□ -0.76
CCDC88C-206ENST00000553437 ESRP1Q6NXG1 681 aaKnown RBP10.29□□□□□ -0.76
CCDC88C-206ENST00000553437 PNCKQ6P2M8 343 aa10.29□□□□□ -0.76
CCDC88C-206ENST00000553437 CRTC1Q6UUV9 634 aa10.29□□□□□ -0.76
CCDC88C-206ENST00000553437 SPOCD1Q6ZMY3 1216 aa10.29□□□□□ -0.76
CCDC88C-206ENST00000553437 TECPR1Q7Z6L1 1165 aa10.29□□□□□ -0.76
CCDC88C-206ENST00000553437 TMPRSS12Q86WS5 348 aa10.29□□□□□ -0.76
CCDC88C-206ENST00000553437 KATNAL2Q8IYT4 538 aa10.29□□□□□ -0.76
CCDC88C-206ENST00000553437 GALNT15Q8N3T1 639 aa10.29□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms