RNA–Protein interactions for RNA: ENST00000541770.1

CLSTN3-212, Transcript of calsyntenin 3, humanhuman

TSL 3

Gene CLSTN3, Length 568 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-212ENST00000541770 LMX1AQ8TE12 382 aa8.79□□□□□ -1
CLSTN3-212ENST00000541770 CASKIN2Q8WXE0 1202 aa8.79□□□□□ -1
CLSTN3-212ENST00000541770 EXTL1Q92935 676 aa8.79□□□□□ -1
CLSTN3-212ENST00000541770 RNF25Q96BH1 459 aaPredicted RBP8.79□□□□□ -1
CLSTN3-212ENST00000541770 HMCESQ96FZ2 354 aa8.79□□□□□ -1
CLSTN3-212ENST00000541770 IL12RB2Q99665 862 aa8.79□□□□□ -1
CLSTN3-212ENST00000541770 SPON2Q9BUD6 331 aa8.79□□□□□ -1
CLSTN3-212ENST00000541770 MAK16Q9BXY0 300 aaKnown RBP8.79□□□□□ -1
CLSTN3-212ENST00000541770 SLC39A8Q9C0K1 460 aa8.79□□□□□ -1
CLSTN3-212ENST00000541770 USP29Q9HBJ7 922 aa8.79□□□□□ -1
CLSTN3-212ENST00000541770 PPM1HQ9ULR3 514 aa8.79□□□□□ -1
CLSTN3-212ENST00000541770 U3KQA8 63 aa8.79□□□□□ -1
CLSTN3-212ENST00000541770 MGAQ8IWI9 3026 aa8.79□□□□□ -1
CLSTN3-212ENST00000541770 ATMQ13315 3056 aa8.79□□□□□ -1
CLSTN3-212ENST00000541770 hCG_1818297A0A087WSY0 165 aa8.78□□□□□ -1
CLSTN3-212ENST00000541770 CDRT15L2A8MXV6 281 aa8.78□□□□□ -1
CLSTN3-212ENST00000541770 APOL1O14791 398 aa8.78□□□□□ -1
CLSTN3-212ENST00000541770 MUSKO15146 869 aa8.78□□□□□ -1
CLSTN3-212ENST00000541770 CASC3O15234 703 aaKnown RBP8.78□□□□□ -1
CLSTN3-212ENST00000541770 ALOX15BO15296 676 aa8.78□□□□□ -1
CLSTN3-212ENST00000541770 DDX3YO15523 660 aaKnown RBP8.78□□□□□ -1
CLSTN3-212ENST00000541770 CD160O95971 181 aa8.78□□□□□ -1
CLSTN3-212ENST00000541770 PAK4O96013 591 aaPredicted RBP8.78□□□□□ -1
CLSTN3-212ENST00000541770 SRCP12931 536 aa8.78□□□□□ -1
CLSTN3-212ENST00000541770 CHRNA3P32297 505 aa8.78□□□□□ -1
CLSTN3-212ENST00000541770 CETN2P41208 172 aa8.78□□□□□ -1
CLSTN3-212ENST00000541770 MARCKSL1P49006 195 aa8.78□□□□□ -1
CLSTN3-212ENST00000541770 PAPOLAP51003 745 aaKnown RBP8.78□□□□□ -1
CLSTN3-212ENST00000541770 SRSF1Q07955 248 aaKnown RBP eCLIP8.78□□□□□ -1
CLSTN3-212ENST00000541770 IL10RBQ08334 325 aa8.78□□□□□ -1
CLSTN3-212ENST00000541770 SPIDRQ14159 915 aa8.78□□□□□ -1
CLSTN3-212ENST00000541770 TFDP2Q14188 446 aa8.78□□□□□ -1
CLSTN3-212ENST00000541770 NR0B2Q15466 257 aa8.78□□□□□ -1
CLSTN3-212ENST00000541770 ZNF284Q2VY69 593 aa8.78□□□□□ -1
CLSTN3-212ENST00000541770 LINC00303Q3SY05 128 aa8.78□□□□□ -1
CLSTN3-212ENST00000541770 INO80DQ53TQ3 878 aaPredicted RBP8.78□□□□□ -1
CLSTN3-212ENST00000541770 PERM1Q5SV97 790 aa8.78□□□□□ -1
CLSTN3-212ENST00000541770 MEI1Q5TIA1 1274 aa8.78□□□□□ -1
CLSTN3-212ENST00000541770 SEL1L3Q68CR1 1132 aa8.78□□□□□ -1
CLSTN3-212ENST00000541770 PLPP6Q8IY26 295 aa8.78□□□□□ -1
CLSTN3-212ENST00000541770 PLD5Q8N7P1 536 aa8.78□□□□□ -1
CLSTN3-212ENST00000541770 ATP11CQ8NB49 1132 aa8.78□□□□□ -1
CLSTN3-212ENST00000541770 ZNF548Q8NEK5 533 aaPredicted RBP8.78□□□□□ -1
CLSTN3-212ENST00000541770 GRIN3AQ8TCU5 1115 aa8.78□□□□□ -1
CLSTN3-212ENST00000541770 TRAF3IP1Q8TDR0 691 aaPredicted RBP8.78□□□□□ -1
CLSTN3-212ENST00000541770 ALG3Q92685 438 aa8.78□□□□□ -1
CLSTN3-212ENST00000541770 FAM131CQ96AQ9 280 aa8.78□□□□□ -1
CLSTN3-212ENST00000541770 ISG20Q96AZ6 181 aaKnown RBP8.78□□□□□ -1
CLSTN3-212ENST00000541770 PRR11Q96HE9 360 aaPredicted RBP8.78□□□□□ -1
CLSTN3-212ENST00000541770 CELF6Q96J87 481 aaKnown RBP8.78□□□□□ -1
CLSTN3-212ENST00000541770 CCDC114Q96M63 670 aa8.78□□□□□ -1
CLSTN3-212ENST00000541770 CEP44Q9C0F1 390 aa8.78□□□□□ -1
CLSTN3-212ENST00000541770 PDFQ9HBH1 243 aa8.78□□□□□ -1
CLSTN3-212ENST00000541770 EPB41L5Q9HCM4 733 aa8.78□□□□□ -1
CLSTN3-212ENST00000541770 KCND1Q9NSA2 647 aa8.78□□□□□ -1
CLSTN3-212ENST00000541770 PYCARDQ9ULZ3 195 aa8.78□□□□□ -1
CLSTN3-212ENST00000541770 ZFR2Q9UPR6 939 aaKnown RBP8.78□□□□□ -1
CLSTN3-212ENST00000541770 MFHAS1Q9Y4C4 1052 aa8.78□□□□□ -1
CLSTN3-212ENST00000541770 PCDHGA8Q9Y5G5 932 aa8.78□□□□□ -1
CLSTN3-212ENST00000541770 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP8.78□□□□□ -1
CLSTN3-212ENST00000541770 CHD5Q8TDI0 1954 aa8.78□□□□□ -1
CLSTN3-212ENST00000541770 TRPM6Q9BX84 2022 aa8.78□□□□□ -1
CLSTN3-212ENST00000541770 CCDC187A0A096LP49 1063 aa8.77□□□□□ -1.01
CLSTN3-212ENST00000541770 POM121BA6NF01 834 aa8.77□□□□□ -1.01
CLSTN3-212ENST00000541770 DFFAO00273 331 aa8.77□□□□□ -1.01
CLSTN3-212ENST00000541770 AQP9O43315 295 aa8.77□□□□□ -1.01
CLSTN3-212ENST00000541770 MFSD11O43934 449 aa8.77□□□□□ -1.01
CLSTN3-212ENST00000541770 MAFKO60675 156 aa8.77□□□□□ -1.01
CLSTN3-212ENST00000541770 PRAMEF11O60813 436 aa8.77□□□□□ -1.01
CLSTN3-212ENST00000541770 MT-CO1P00395 513 aa8.77□□□□□ -1.01
CLSTN3-212ENST00000541770 CTSLP07711 333 aa8.77□□□□□ -1.01
CLSTN3-212ENST00000541770 FAM87AP0C7U9 286 aa8.77□□□□□ -1.01
CLSTN3-212ENST00000541770 JUNDP17535 347 aa8.77□□□□□ -1.01
CLSTN3-212ENST00000541770 MX2P20592 715 aa8.77□□□□□ -1.01
CLSTN3-212ENST00000541770 GARSP41250 739 aaKnown RBP8.77□□□□□ -1.01
CLSTN3-212ENST00000541770 NR2C2P49116 596 aa8.77□□□□□ -1.01
CLSTN3-212ENST00000541770 SKOR1P84550 965 aa8.77□□□□□ -1.01
CLSTN3-212ENST00000541770 GALNT2Q10471 571 aa8.77□□□□□ -1.01
CLSTN3-212ENST00000541770 SRSF6Q13247 344 aaKnown RBP8.77□□□□□ -1.01
CLSTN3-212ENST00000541770 C1orf61Q13536 156 aa8.77□□□□□ -1.01
CLSTN3-212ENST00000541770 PDE1CQ14123 709 aaPredicted RBP8.77□□□□□ -1.01
CLSTN3-212ENST00000541770 FZD2Q14332 565 aa8.77□□□□□ -1.01
CLSTN3-212ENST00000541770 RFTN1Q14699 578 aaPredicted RBP8.77□□□□□ -1.01
CLSTN3-212ENST00000541770 TGIF1Q15583 401 aa8.77□□□□□ -1.01
CLSTN3-212ENST00000541770 ARSIQ5FYB1 569 aa8.77□□□□□ -1.01
CLSTN3-212ENST00000541770 TMCO4Q5TGY1 634 aa8.77□□□□□ -1.01
CLSTN3-212ENST00000541770 NEK5Q6P3R8 708 aa8.77□□□□□ -1.01
CLSTN3-212ENST00000541770 IGF2-ASQ6U949 168 aa8.77□□□□□ -1.01
CLSTN3-212ENST00000541770 LINGO4Q6UY18 593 aa8.77□□□□□ -1.01
CLSTN3-212ENST00000541770 ZNF574Q6ZN55 896 aaPredicted RBP8.77□□□□□ -1.01
CLSTN3-212ENST00000541770 BZW1Q7L1Q6 419 aaKnown RBP8.77□□□□□ -1.01
CLSTN3-212ENST00000541770 ABI3BPQ7Z7G0 1075 aa8.77□□□□□ -1.01
CLSTN3-212ENST00000541770 PARGQ86W56 976 aa8.77□□□□□ -1.01
CLSTN3-212ENST00000541770 ZNF354CQ86Y25 554 aa8.77□□□□□ -1.01
CLSTN3-212ENST00000541770 RFX6Q8HWS3 928 aa8.77□□□□□ -1.01
CLSTN3-212ENST00000541770 DCP2Q8IU60 420 aaKnown RBP8.77□□□□□ -1.01
CLSTN3-212ENST00000541770 CCDC50Q8IVM0 306 aa8.77□□□□□ -1.01
CLSTN3-212ENST00000541770 TP53INP2Q8IXH6 220 aa8.77□□□□□ -1.01
CLSTN3-212ENST00000541770 FBXO39Q8N4B4 442 aa8.77□□□□□ -1.01
CLSTN3-212ENST00000541770 PCDH20Q8N6Y1 951 aaKnown RBP8.77□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms