RNA–Protein interactions for RNA: ENST00000494043.1

MCF2L-231, Transcript of MCF.2 cell line derived transforming sequence like, human

TSL 3

Gene MCF2L, Length 896 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
MCF2L-231	ENST00000494043	STX2	P32856	288 aa		11.43	□□□□□ -0.58
MCF2L-231	ENST00000494043	SUOX	P51687	545 aa		11.43	□□□□□ -0.58
MCF2L-231	ENST00000494043	NEK3	P51956	506 aa		11.43	□□□□□ -0.58
MCF2L-231	ENST00000494043	RPS14	P62263	151 aa	Known RBP	11.43	□□□□□ -0.58
MCF2L-231	ENST00000494043	PDE1B	Q01064	536 aa		11.43	□□□□□ -0.58
MCF2L-231	ENST00000494043	FZD5	Q13467	585 aa		11.43	□□□□□ -0.58
MCF2L-231	ENST00000494043	FRG1	Q14331	258 aa	Known RBP	11.43	□□□□□ -0.58
MCF2L-231	ENST00000494043	CST6	Q15828	149 aa		11.43	□□□□□ -0.58
MCF2L-231	ENST00000494043	CDKN3	Q16667	212 aa		11.43	□□□□□ -0.58
MCF2L-231	ENST00000494043	LRRC73	Q5JTD7	316 aa		11.43	□□□□□ -0.58
MCF2L-231	ENST00000494043	KIAA0930	Q6ICG6	404 aa	Predicted RBP	11.43	□□□□□ -0.58
MCF2L-231	ENST00000494043	CES3	Q6UWW8	571 aa		11.43	□□□□□ -0.58
MCF2L-231	ENST00000494043	DPPA4	Q7L190	304 aa		11.43	□□□□□ -0.58
MCF2L-231	ENST00000494043	LYSMD3	Q7Z3D4	306 aa		11.43	□□□□□ -0.58
MCF2L-231	ENST00000494043	IQCK	Q8N0W5	287 aa		11.43	□□□□□ -0.58
MCF2L-231	ENST00000494043	OR13J1	Q8NGT2	312 aa		11.43	□□□□□ -0.58
MCF2L-231	ENST00000494043	UHMK1	Q8TAS1	419 aa	Known RBP	11.43	□□□□□ -0.58
MCF2L-231	ENST00000494043	FBF1	Q8TES7	1133 aa		11.43	□□□□□ -0.58
MCF2L-231	ENST00000494043	PEX13	Q92968	403 aa		11.43	□□□□□ -0.58
MCF2L-231	ENST00000494043	FCRL3	Q96P31	734 aa	Predicted RBP	11.43	□□□□□ -0.58
MCF2L-231	ENST00000494043	NELL2	Q99435	816 aa		11.43	□□□□□ -0.58
MCF2L-231	ENST00000494043	HDAC8	Q9BY41	377 aa		11.43	□□□□□ -0.58
MCF2L-231	ENST00000494043	GPR63	Q9BZJ6	419 aa		11.43	□□□□□ -0.58
MCF2L-231	ENST00000494043	FOXQ1	Q9C009	403 aa		11.43	□□□□□ -0.58
MCF2L-231	ENST00000494043	VIPAS39	Q9H9C1	493 aa		11.43	□□□□□ -0.58
MCF2L-231	ENST00000494043	TBC1D17	Q9HA65	648 aa		11.43	□□□□□ -0.58
MCF2L-231	ENST00000494043	LMAN1L	Q9HAT1	526 aa		11.43	□□□□□ -0.58
MCF2L-231	ENST00000494043	PCDH12	Q9NPG4	1184 aa		11.43	□□□□□ -0.58
MCF2L-231	ENST00000494043	B4GALT6	Q9UBX8	382 aa		11.43	□□□□□ -0.58
MCF2L-231	ENST00000494043	SLC2A6	Q9UGQ3	507 aa		11.43	□□□□□ -0.58
MCF2L-231	ENST00000494043	PLAA	Q9Y263	795 aa		11.43	□□□□□ -0.58
MCF2L-231	ENST00000494043	MTF2	Q9Y483	593 aa	Predicted RBP	11.43	□□□□□ -0.58
MCF2L-231	ENST00000494043	KCTD3	Q9Y597	815 aa		11.43	□□□□□ -0.58
MCF2L-231	ENST00000494043	FAM169A	Q9Y6X4	670 aa		11.43	□□□□□ -0.58
MCF2L-231	ENST00000494043	FAM170B	A6NMN3	283 aa		11.42	□□□□□ -0.58
MCF2L-231	ENST00000494043	PLK4	O00444	970 aa		11.42	□□□□□ -0.58
MCF2L-231	ENST00000494043	MAP2K7	O14733	419 aa		11.42	□□□□□ -0.58
MCF2L-231	ENST00000494043	MID1	O15344	667 aa		11.42	□□□□□ -0.58
MCF2L-231	ENST00000494043	SPINT1	O43278	529 aa		11.42	□□□□□ -0.58
MCF2L-231	ENST00000494043	BUD23	O43709	281 aa	Known RBP	11.42	□□□□□ -0.58
MCF2L-231	ENST00000494043	SLC4A1	P02730	911 aa		11.42	□□□□□ -0.58
MCF2L-231	ENST00000494043	SHBG	P04278	402 aa		11.42	□□□□□ -0.58
MCF2L-231	ENST00000494043	C7	P10643	843 aa		11.42	□□□□□ -0.58
MCF2L-231	ENST00000494043	ADRB3	P13945	408 aa		11.42	□□□□□ -0.58
MCF2L-231	ENST00000494043	PAM	P19021	973 aa		11.42	□□□□□ -0.58
MCF2L-231	ENST00000494043	C5AR1	P21730	350 aa		11.42	□□□□□ -0.58
MCF2L-231	ENST00000494043	LPO	P22079	712 aa	Predicted RBP	11.42	□□□□□ -0.58
MCF2L-231	ENST00000494043	LHCGR	P22888	699 aa		11.42	□□□□□ -0.58
MCF2L-231	ENST00000494043	PSMA3	P25788	255 aa		11.42	□□□□□ -0.58
MCF2L-231	ENST00000494043	DRD3	P35462	400 aa		11.42	□□□□□ -0.58
MCF2L-231	ENST00000494043	HMGCL	P35914	325 aa		11.42	□□□□□ -0.58
MCF2L-231	ENST00000494043	MMP12	P39900	470 aa		11.42	□□□□□ -0.58
MCF2L-231	ENST00000494043	P2RY2	P41231	377 aa		11.42	□□□□□ -0.58
MCF2L-231	ENST00000494043	FAM193A	P78312	1265 aa		11.42	□□□□□ -0.58
MCF2L-231	ENST00000494043	ZXDA	P98168	799 aa		11.42	□□□□□ -0.58
MCF2L-231	ENST00000494043	ACVR1	Q04771	509 aa		11.42	□□□□□ -0.58
MCF2L-231	ENST00000494043	CNGA3	Q16281	694 aa		11.42	□□□□□ -0.58
MCF2L-231	ENST00000494043	LONRF1	Q17RB8	773 aa		11.42	□□□□□ -0.58
MCF2L-231	ENST00000494043	SKIDA1	Q1XH10	827 aa		11.42	□□□□□ -0.58
MCF2L-231	ENST00000494043	ALS2CL	Q60I27	953 aa		11.42	□□□□□ -0.58
MCF2L-231	ENST00000494043	LRRC66	Q68CR7	880 aa		11.42	□□□□□ -0.58
MCF2L-231	ENST00000494043	ESRP1	Q6NXG1	681 aa	Known RBP	11.42	□□□□□ -0.58
MCF2L-231	ENST00000494043	ERAP2	Q6P179	960 aa		11.42	□□□□□ -0.58
MCF2L-231	ENST00000494043	ZNF449	Q6P9G9	518 aa		11.42	□□□□□ -0.58
MCF2L-231	ENST00000494043	FBXL19	Q6PCT2	694 aa		11.42	□□□□□ -0.58
MCF2L-231	ENST00000494043	TRMT10B	Q6PF06	316 aa	Known RBP	11.42	□□□□□ -0.58
MCF2L-231	ENST00000494043	CRTC1	Q6UUV9	634 aa		11.42	□□□□□ -0.58
MCF2L-231	ENST00000494043	LRIG3	Q6UXM1	1119 aa		11.42	□□□□□ -0.58
MCF2L-231	ENST00000494043	TMEM92	Q6UXU6	159 aa		11.42	□□□□□ -0.58
MCF2L-231	ENST00000494043	CYS1	Q717R9	158 aa		11.42	□□□□□ -0.58
MCF2L-231	ENST00000494043	ERN2	Q76MJ5	926 aa	Known RBP	11.42	□□□□□ -0.58
MCF2L-231	ENST00000494043	TTC7B	Q86TV6	843 aa		11.42	□□□□□ -0.58
MCF2L-231	ENST00000494043	TSPAN33	Q86UF1	283 aa		11.42	□□□□□ -0.58
MCF2L-231	ENST00000494043	CACUL1	Q86Y37	369 aa		11.42	□□□□□ -0.58
MCF2L-231	ENST00000494043	AADAT	Q8N5Z0	425 aa		11.42	□□□□□ -0.58
MCF2L-231	ENST00000494043	OR13C4	Q8NGS5	318 aa		11.42	□□□□□ -0.58
MCF2L-231	ENST00000494043	OR2W6P	Q8NHA6	318 aa		11.42	□□□□□ -0.58
MCF2L-231	ENST00000494043	STYX	Q8WUJ0	223 aa		11.42	□□□□□ -0.58
MCF2L-231	ENST00000494043	CERS2	Q96G23	380 aa		11.42	□□□□□ -0.58
MCF2L-231	ENST00000494043	DNAJC1	Q96KC8	554 aa	Known RBP	11.42	□□□□□ -0.58
MCF2L-231	ENST00000494043	NECAB3	Q96P71	396 aa	Predicted RBP	11.42	□□□□□ -0.58
MCF2L-231	ENST00000494043	ZIM3	Q96PE6	472 aa		11.42	□□□□□ -0.58
MCF2L-231	ENST00000494043	MKRN2	Q9H000	416 aa	Known RBP	11.42	□□□□□ -0.58
MCF2L-231	ENST00000494043	ACSS3	Q9H6R3	686 aa		11.42	□□□□□ -0.58
MCF2L-231	ENST00000494043	ZFYVE1	Q9HBF4	777 aa		11.42	□□□□□ -0.58
MCF2L-231	ENST00000494043	NLE1	Q9NVX2	485 aa	Predicted RBP	11.42	□□□□□ -0.58
MCF2L-231	ENST00000494043	POLR3B	Q9NW08	1133 aa	Predicted RBP	11.42	□□□□□ -0.58
MCF2L-231	ENST00000494043	MOCS1	Q9NZB8	636 aa		11.42	□□□□□ -0.58
MCF2L-231	ENST00000494043	RABGEF1	Q9UJ41	708 aa		11.42	□□□□□ -0.58
MCF2L-231	ENST00000494043	NFS1	Q9Y697	457 aa		11.42	□□□□□ -0.58
MCF2L-231	ENST00000494043		A0A0U1RQS6	177 aa		11.41	□□□□□ -0.58
MCF2L-231	ENST00000494043	FAM159B	A6NKW6	160 aa		11.41	□□□□□ -0.58
MCF2L-231	ENST00000494043	AREL1	O15033	823 aa		11.41	□□□□□ -0.58
MCF2L-231	ENST00000494043	STX7	O15400	261 aa	Known RBP	11.41	□□□□□ -0.58
MCF2L-231	ENST00000494043	ATG13	O75143	517 aa		11.41	□□□□□ -0.58
MCF2L-231	ENST00000494043	RPP40	O75818	363 aa	Known RBP	11.41	□□□□□ -0.58
MCF2L-231	ENST00000494043	SASH3	O75995	380 aa		11.41	□□□□□ -0.58
MCF2L-231	ENST00000494043	CLDN7	O95471	211 aa		11.41	□□□□□ -0.58
MCF2L-231	ENST00000494043	C1QA	P02745	245 aa		11.41	□□□□□ -0.58
MCF2L-231	ENST00000494043	ZNF30	P17039	623 aa		11.41	□□□□□ -0.58

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