RNA–Protein interactions for RNA: ENST00000484954.1

VPS50-216, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 594 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-216ENST00000484954 CHATP28329 748 aa3.23□□□□□ -1.89
VPS50-216ENST00000484954 STX2P32856 288 aa3.23□□□□□ -1.89
VPS50-216ENST00000484954 RELQ04864 619 aaPredicted RBP3.23□□□□□ -1.89
VPS50-216ENST00000484954 ITGADQ13349 1161 aa3.23□□□□□ -1.89
VPS50-216ENST00000484954 TAF11Q15544 211 aa3.23□□□□□ -1.89
VPS50-216ENST00000484954 NFIL3Q16649 462 aa3.23□□□□□ -1.89
VPS50-216ENST00000484954 C2orf68Q2NKX9 166 aa3.23□□□□□ -1.89
VPS50-216ENST00000484954 PPP6R3Q5H9R7 873 aaPredicted RBP3.23□□□□□ -1.89
VPS50-216ENST00000484954 ZNF766Q5HY98 468 aa3.23□□□□□ -1.89
VPS50-216ENST00000484954 ZSCAN2Q7Z7L9 614 aaPredicted RBP3.23□□□□□ -1.89
VPS50-216ENST00000484954 TADA2BQ86TJ2 420 aa3.23□□□□□ -1.89
VPS50-216ENST00000484954 SLC9B2Q86UD5 537 aa3.23□□□□□ -1.89
VPS50-216ENST00000484954 DCUN1D3Q8IWE4 304 aa3.23□□□□□ -1.89
VPS50-216ENST00000484954 CHERPQ8IWX8 916 aaKnown RBP3.23□□□□□ -1.89
VPS50-216ENST00000484954 MAB21L3Q8N8X9 362 aa3.23□□□□□ -1.89
VPS50-216ENST00000484954 LMNTD1Q8N9Z9 388 aa3.23□□□□□ -1.89
VPS50-216ENST00000484954 OR2AK2Q8NG84 335 aa3.23□□□□□ -1.89
VPS50-216ENST00000484954 BBS10Q8TAM1 723 aa3.23□□□□□ -1.89
VPS50-216ENST00000484954 LNX1Q8TBB1 728 aaPredicted RBP3.23□□□□□ -1.89
VPS50-216ENST00000484954 DUSP19Q8WTR2 217 aa3.23□□□□□ -1.89
VPS50-216ENST00000484954 TTC14Q96N46 770 aa3.23□□□□□ -1.89
VPS50-216ENST00000484954 BBS4Q96RK4 519 aa3.23□□□□□ -1.89
VPS50-216ENST00000484954 SIN3AQ96ST3 1273 aa3.23□□□□□ -1.89
VPS50-216ENST00000484954 MMTAG2Q9BU76 263 aaKnown RBP3.23□□□□□ -1.89
VPS50-216ENST00000484954 C20orf141Q9NUB4 165 aa3.23□□□□□ -1.89
VPS50-216ENST00000484954 TMEM160Q9NX00 188 aa3.23□□□□□ -1.89
VPS50-216ENST00000484954 LSM4Q9Y4Z0 139 aaKnown RBP3.23□□□□□ -1.89
VPS50-216ENST00000484954 CGNL1Q0VF96 1302 aa3.22□□□□□ -1.89
VPS50-216ENST00000484954 PDS5AQ29RF7 1337 aaKnown RBP3.22□□□□□ -1.89
VPS50-216ENST00000484954 RFPL2O75678 378 aa3.22□□□□□ -1.89
VPS50-216ENST00000484954 PAK4O96013 591 aaPredicted RBP3.22□□□□□ -1.89
VPS50-216ENST00000484954 SRCP12931 536 aa3.22□□□□□ -1.89
VPS50-216ENST00000484954 KCNA5P22460 613 aa3.22□□□□□ -1.89
VPS50-216ENST00000484954 MARK3P27448 753 aa3.22□□□□□ -1.89
VPS50-216ENST00000484954 SHMT1P34896 483 aa3.22□□□□□ -1.89
VPS50-216ENST00000484954 DDIT3P35638 169 aa3.22□□□□□ -1.89
VPS50-216ENST00000484954 GGT5P36269 586 aa3.22□□□□□ -1.89
VPS50-216ENST00000484954 UBE3AQ05086 875 aa3.22□□□□□ -1.89
VPS50-216ENST00000484954 RBM39Q14498 530 aaKnown RBP3.22□□□□□ -1.89
VPS50-216ENST00000484954 VEPH1Q14D04 833 aa3.22□□□□□ -1.89
VPS50-216ENST00000484954 MRGPRG-AS1Q2M3A8 158 aa3.22□□□□□ -1.89
VPS50-216ENST00000484954 TMEM81Q6P7N7 255 aa3.22□□□□□ -1.89
VPS50-216ENST00000484954 DSG4Q86SJ6 1040 aa3.22□□□□□ -1.89
VPS50-216ENST00000484954 LRRTM4Q86VH4 590 aa3.22□□□□□ -1.89
VPS50-216ENST00000484954 AGBL3Q8NEM8 1001 aa3.22□□□□□ -1.89
VPS50-216ENST00000484954 SLC20A1Q8WUM9 679 aa3.22□□□□□ -1.89
VPS50-216ENST00000484954 OTULINQ96BN8 352 aa3.22□□□□□ -1.89
VPS50-216ENST00000484954 FBXL8Q96CD0 374 aa3.22□□□□□ -1.89
VPS50-216ENST00000484954 ZBTB10Q96DT7 871 aa3.22□□□□□ -1.89
VPS50-216ENST00000484954 ZSCAN31Q96LW9 406 aaPredicted RBP3.22□□□□□ -1.89
VPS50-216ENST00000484954 PCYT2Q99447 389 aa3.22□□□□□ -1.89
VPS50-216ENST00000484954 MPHOSPH8Q99549 860 aa3.22□□□□□ -1.89
VPS50-216ENST00000484954 MMP28Q9H239 520 aa3.22□□□□□ -1.89
VPS50-216ENST00000484954 C17orf75Q9HAS0 396 aa3.22□□□□□ -1.89
VPS50-216ENST00000484954 MAGEE1Q9HCI5 957 aa3.22□□□□□ -1.89
VPS50-216ENST00000484954 ZFP57Q9NU63 452 aa3.22□□□□□ -1.89
VPS50-216ENST00000484954 RCOR1Q9UKL0 485 aa3.22□□□□□ -1.89
VPS50-216ENST00000484954 VDAC3Q9Y277 283 aa3.22□□□□□ -1.89
VPS50-216ENST00000484954 STON1Q9Y6Q2 735 aa3.22□□□□□ -1.89
VPS50-216ENST00000484954 ATXN2Q99700 1313 aaKnown RBP3.21□□□□□ -1.89
VPS50-216ENST00000484954 LDLRAD4O15165 306 aa3.21□□□□□ -1.9
VPS50-216ENST00000484954 CRYAAP02489 173 aa3.21□□□□□ -1.9
VPS50-216ENST00000484954 MMP2P08253 660 aa3.21□□□□□ -1.9
VPS50-216ENST00000484954 CFC1BP0CG36 223 aa3.21□□□□□ -1.9
VPS50-216ENST00000484954 CFC1P0CG37 223 aa3.21□□□□□ -1.9
VPS50-216ENST00000484954 ITGA2P17301 1181 aa3.21□□□□□ -1.9
VPS50-216ENST00000484954 GPTP24298 496 aa3.21□□□□□ -1.9
VPS50-216ENST00000484954 CNTFP26441 200 aa3.21□□□□□ -1.9
VPS50-216ENST00000484954 POU1F1P28069 291 aa3.21□□□□□ -1.9
VPS50-216ENST00000484954 PGM1P36871 562 aa3.21□□□□□ -1.9
VPS50-216ENST00000484954 CDH15P55291 814 aa3.21□□□□□ -1.9
VPS50-216ENST00000484954 TROAPQ12815 778 aa3.21□□□□□ -1.9
VPS50-216ENST00000484954 PPFIA1Q13136 1202 aa3.21□□□□□ -1.9
VPS50-216ENST00000484954 NEDD9Q14511 834 aa3.21□□□□□ -1.9
VPS50-216ENST00000484954 RNPS1Q15287 305 aaKnown RBP3.21□□□□□ -1.9
VPS50-216ENST00000484954 LCE1FQ5T754 118 aa3.21□□□□□ -1.9
VPS50-216ENST00000484954 LCTLQ6UWM7 567 aa3.21□□□□□ -1.9
VPS50-216ENST00000484954 GFRALQ6UXV0 394 aa3.21□□□□□ -1.9
VPS50-216ENST00000484954 SLC36A4Q6YBV0 504 aa3.21□□□□□ -1.9
VPS50-216ENST00000484954 CCNI2Q6ZMN8 369 aaPredicted RBP3.21□□□□□ -1.9
VPS50-216ENST00000484954 SFR1Q86XK3 245 aa3.21□□□□□ -1.9
VPS50-216ENST00000484954 TMEM219Q86XT9 240 aa3.21□□□□□ -1.9
VPS50-216ENST00000484954 TMTC1Q8IUR5 882 aa3.21□□□□□ -1.9
VPS50-216ENST00000484954 ZNF34Q8IZ26 560 aa3.21□□□□□ -1.9
VPS50-216ENST00000484954 ZBTB2Q8N680 514 aa3.21□□□□□ -1.9
VPS50-216ENST00000484954 SCCPDHQ8NBX0 429 aa3.21□□□□□ -1.9
VPS50-216ENST00000484954 TNIP2Q8NFZ5 429 aa3.21□□□□□ -1.9
VPS50-216ENST00000484954 PABPC5Q96DU9 382 aaKnown RBP3.21□□□□□ -1.9
VPS50-216ENST00000484954 HES6Q96HZ4 224 aa3.21□□□□□ -1.9
VPS50-216ENST00000484954 FEM1CQ96JP0 617 aa3.21□□□□□ -1.9
VPS50-216ENST00000484954 ZNF570Q96NI8 536 aa3.21□□□□□ -1.9
VPS50-216ENST00000484954 EPYCQ99645 322 aa3.21□□□□□ -1.9
VPS50-216ENST00000484954 KXD1Q9BQD3 176 aa3.21□□□□□ -1.9
VPS50-216ENST00000484954 INTS2Q9H0H0 1204 aaKnown RBP3.21□□□□□ -1.9
VPS50-216ENST00000484954 RALYQ9UKM9 306 aaKnown RBP3.21□□□□□ -1.9
VPS50-216ENST00000484954 DDX52Q9Y2R4 599 aaKnown RBP eCLIP3.21□□□□□ -1.9
VPS50-216ENST00000484954 GOLGA6L10A0A0M3HER8 536 aa3.2□□□□□ -1.9
VPS50-216ENST00000484954 P2RY10O00398 339 aa3.2□□□□□ -1.9
VPS50-216ENST00000484954 MTA2O94776 668 aa3.2□□□□□ -1.9
VPS50-216ENST00000484954 POLBP06746 335 aa3.2□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms