RNA–Protein interactions for RNA: ENST00000474059.1

CCDC88A-212, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5

Gene CCDC88A, Length 541 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-212ENST00000474059 SLC25A17O43808 307 aa3.22□□□□□ -1.89
CCDC88A-212ENST00000474059 ZIC3O60481 467 aa3.22□□□□□ -1.89
CCDC88A-212ENST00000474059 RFPL2O75678 378 aa3.22□□□□□ -1.89
CCDC88A-212ENST00000474059 RNF224P0DH78 156 aa3.22□□□□□ -1.89
CCDC88A-212ENST00000474059 CDH1P12830 882 aa3.22□□□□□ -1.89
CCDC88A-212ENST00000474059 RXRAP19793 462 aa3.22□□□□□ -1.89
CCDC88A-212ENST00000474059 DSCR10P59022 87 aa3.22□□□□□ -1.89
CCDC88A-212ENST00000474059 ACTR2P61160 394 aa3.22□□□□□ -1.89
CCDC88A-212ENST00000474059 PDCLQ13371 301 aa3.22□□□□□ -1.89
CCDC88A-212ENST00000474059 BYSLQ13895 437 aaKnown RBP3.22□□□□□ -1.89
CCDC88A-212ENST00000474059 SLC1A5Q15758 541 aa3.22□□□□□ -1.89
CCDC88A-212ENST00000474059 SMAD1Q15797 465 aaKnown RBP3.22□□□□□ -1.89
CCDC88A-212ENST00000474059 ATP13A5Q4VNC0 1218 aa3.22□□□□□ -1.89
CCDC88A-212ENST00000474059 NAPEPLDQ6IQ20 393 aa3.22□□□□□ -1.89
CCDC88A-212ENST00000474059 SYNE3Q6ZMZ3 975 aa3.22□□□□□ -1.89
CCDC88A-212ENST00000474059 SYT13Q7L8C5 426 aa3.22□□□□□ -1.89
CCDC88A-212ENST00000474059 TMEM219Q86XT9 240 aa3.22□□□□□ -1.89
CCDC88A-212ENST00000474059 CPOQ8IVL8 374 aa3.22□□□□□ -1.89
CCDC88A-212ENST00000474059 GOLGA1Q92805 767 aa3.22□□□□□ -1.89
CCDC88A-212ENST00000474059 PYM1Q9BRP8 204 aaKnown RBP3.22□□□□□ -1.89
CCDC88A-212ENST00000474059 CHODLQ9H9P2 273 aa3.22□□□□□ -1.89
CCDC88A-212ENST00000474059 RIC8AQ9NPQ8 531 aa3.22□□□□□ -1.89
CCDC88A-212ENST00000474059 G6PC2Q9NQR9 355 aa3.22□□□□□ -1.89
CCDC88A-212ENST00000474059 ABCF3Q9NUQ8 709 aa3.22□□□□□ -1.89
CCDC88A-212ENST00000474059 GGA3Q9NZ52 723 aa3.22□□□□□ -1.89
CCDC88A-212ENST00000474059 PGAP2Q9UHJ9 254 aa3.22□□□□□ -1.89
CCDC88A-212ENST00000474059 RRN3P2A6NIE6 340 aa3.21□□□□□ -1.9
CCDC88A-212ENST00000474059 HBP1O60381 514 aa3.21□□□□□ -1.9
CCDC88A-212ENST00000474059 AGR2O95994 175 aa3.21□□□□□ -1.9
CCDC88A-212ENST00000474059 TK1P04183 234 aa3.21□□□□□ -1.9
CCDC88A-212ENST00000474059 POLBP06746 335 aa3.21□□□□□ -1.9
CCDC88A-212ENST00000474059 CNTFP26441 200 aa3.21□□□□□ -1.9
CCDC88A-212ENST00000474059 PAPOLAP51003 745 aaKnown RBP3.21□□□□□ -1.9
CCDC88A-212ENST00000474059 EFR3AQ14156 821 aa3.21□□□□□ -1.9
CCDC88A-212ENST00000474059 ZNF484Q5JVG2 852 aa3.21□□□□□ -1.9
CCDC88A-212ENST00000474059 BSPRYQ5W0U4 402 aa3.21□□□□□ -1.9
CCDC88A-212ENST00000474059 MMS22LQ6ZRQ5 1243 aa3.21□□□□□ -1.9
CCDC88A-212ENST00000474059 SPAG16Q8N0X2 631 aa3.21□□□□□ -1.9
CCDC88A-212ENST00000474059 PAF1Q8N7H5 531 aa3.21□□□□□ -1.9
CCDC88A-212ENST00000474059 FSIP1Q8NA03 581 aa3.21□□□□□ -1.9
CCDC88A-212ENST00000474059 DMBX1Q8NFW5 382 aa3.21□□□□□ -1.9
CCDC88A-212ENST00000474059 BBS10Q8TAM1 723 aa3.21□□□□□ -1.9
CCDC88A-212ENST00000474059 ERGIC1Q969X5 290 aa3.21□□□□□ -1.9
CCDC88A-212ENST00000474059 RNF183Q96D59 192 aa3.21□□□□□ -1.9
CCDC88A-212ENST00000474059 TBATAQ96M53 351 aa3.21□□□□□ -1.9
CCDC88A-212ENST00000474059 COG8Q96MW5 612 aa3.21□□□□□ -1.9
CCDC88A-212ENST00000474059 EIF2AK1Q9BQI3 630 aaKnown RBP3.21□□□□□ -1.9
CCDC88A-212ENST00000474059 PLEKHA2Q9HB19 425 aa3.21□□□□□ -1.9
CCDC88A-212ENST00000474059 PDP2Q9P2J9 529 aa3.21□□□□□ -1.9
CCDC88A-212ENST00000474059 GJD2Q9UKL4 321 aa3.21□□□□□ -1.9
CCDC88A-212ENST00000474059 RALYQ9UKM9 306 aaKnown RBP3.21□□□□□ -1.9
CCDC88A-212ENST00000474059 ASPDHA6ND91 283 aa3.2□□□□□ -1.9
CCDC88A-212ENST00000474059 SOCS6O14544 535 aa3.2□□□□□ -1.9
CCDC88A-212ENST00000474059 CAPN9O14815 690 aa3.2□□□□□ -1.9
CCDC88A-212ENST00000474059 PLRG1O43660 514 aaKnown RBP3.2□□□□□ -1.9
CCDC88A-212ENST00000474059 METTL18O95568 372 aa3.2□□□□□ -1.9
CCDC88A-212ENST00000474059 ADAP00813 363 aa3.2□□□□□ -1.9
CCDC88A-212ENST00000474059 SERPINC1P01008 464 aa3.2□□□□□ -1.9
CCDC88A-212ENST00000474059 IL1AP01583 271 aa3.2□□□□□ -1.9
CCDC88A-212ENST00000474059 MCM2P49736 904 aa3.2□□□□□ -1.9
CCDC88A-212ENST00000474059 RBM5P52756 815 aaKnown RBP eCLIP3.2□□□□□ -1.9
CCDC88A-212ENST00000474059 ARSFP54793 590 aa3.2□□□□□ -1.9
CCDC88A-212ENST00000474059 SH2D4BQ5SQS7 431 aa3.2□□□□□ -1.9
CCDC88A-212ENST00000474059 STXBP5Q5T5C0 1151 aa3.2□□□□□ -1.9
CCDC88A-212ENST00000474059 CCDC70Q6NSX1 233 aa3.2□□□□□ -1.9
CCDC88A-212ENST00000474059 GJB7Q6PEY0 223 aa3.2□□□□□ -1.9
CCDC88A-212ENST00000474059 LCTLQ6UWM7 567 aa3.2□□□□□ -1.9
CCDC88A-212ENST00000474059 LRRTM4Q86VH4 590 aa3.2□□□□□ -1.9
CCDC88A-212ENST00000474059 FOXRED2Q8IWF2 684 aa3.2□□□□□ -1.9
CCDC88A-212ENST00000474059 TMEM57Q8N5G2 664 aa3.2□□□□□ -1.9
CCDC88A-212ENST00000474059 ZMIZ2Q8NF64 920 aa3.2□□□□□ -1.9
CCDC88A-212ENST00000474059 IL17REQ8NFR9 667 aa3.2□□□□□ -1.9
CCDC88A-212ENST00000474059 CEP70Q8NHQ1 597 aa3.2□□□□□ -1.9
CCDC88A-212ENST00000474059 HERVK_113Q902F9 699 aa3.2□□□□□ -1.9
CCDC88A-212ENST00000474059 NCSTNQ92542 709 aa3.2□□□□□ -1.9
CCDC88A-212ENST00000474059 MAELQ96JY0 434 aaKnown RBP3.2□□□□□ -1.9
CCDC88A-212ENST00000474059 CYSLTR2Q9NS75 346 aa3.2□□□□□ -1.9
CCDC88A-212ENST00000474059 CDC14AQ9UNH5 594 aa3.2□□□□□ -1.9
CCDC88A-212ENST00000474059 DERAQ9Y315 318 aa3.2□□□□□ -1.9
CCDC88A-212ENST00000474059 PDS5AQ29RF7 1337 aaKnown RBP3.19□□□□□ -1.9
CCDC88A-212ENST00000474059 ADGRF5Q8IZF2 1346 aa3.19□□□□□ -1.9
CCDC88A-212ENST00000474059 A0A1B0GVC2 190 aa3.19□□□□□ -1.9
CCDC88A-212ENST00000474059 A0A1W2PNU3 283 aaPredicted RBP3.19□□□□□ -1.9
CCDC88A-212ENST00000474059 SH3BP5O60239 455 aa3.19□□□□□ -1.9
CCDC88A-212ENST00000474059 TIPRLO75663 272 aa3.19□□□□□ -1.9
CCDC88A-212ENST00000474059 WDHD1O75717 1129 aaPredicted RBP3.19□□□□□ -1.9
CCDC88A-212ENST00000474059 RGS11O94810 467 aa3.19□□□□□ -1.9
CCDC88A-212ENST00000474059 TNNT1P13805 278 aa3.19□□□□□ -1.9
CCDC88A-212ENST00000474059 SRD5A1P18405 259 aa3.19□□□□□ -1.9
CCDC88A-212ENST00000474059 ZNF10P21506 573 aaPredicted RBP3.19□□□□□ -1.9
CCDC88A-212ENST00000474059 HNRNPH1P31943 449 aaKnown RBP3.19□□□□□ -1.9
CCDC88A-212ENST00000474059 RYKP34925 604 aa3.19□□□□□ -1.9
CCDC88A-212ENST00000474059 PITX1P78337 314 aaPredicted RBP3.19□□□□□ -1.9
CCDC88A-212ENST00000474059 ARHGAP8P85298 464 aa3.19□□□□□ -1.9
CCDC88A-212ENST00000474059 SLC12A1Q13621 1099 aa3.19□□□□□ -1.9
CCDC88A-212ENST00000474059 THOC5Q13769 683 aaKnown RBP3.19□□□□□ -1.9
CCDC88A-212ENST00000474059 ZNF876PQ49A33 203 aa3.19□□□□□ -1.9
CCDC88A-212ENST00000474059 CHERPQ8IWX8 916 aaKnown RBP3.19□□□□□ -1.9
CCDC88A-212ENST00000474059 KCNH5Q8NCM2 988 aa3.19□□□□□ -1.9
CCDC88A-212ENST00000474059 ADAD2Q8NCV1 583 aaKnown RBP3.19□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms