RNA–Protein interactions for RNA: ENST00000425244.6

CUX1-205, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,776 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-205ENST00000425244 RANBP10Q6VN20 620 aa10.72□□□□□ -0.69
CUX1-205ENST00000425244 SPRED2Q7Z698 418 aa10.72□□□□□ -0.69
CUX1-205ENST00000425244 ADGRG6Q86SQ4 1221 aa10.72□□□□□ -0.69
CUX1-205ENST00000425244 RBM12BQ8IXT5 1001 aaKnown RBP10.72□□□□□ -0.69
CUX1-205ENST00000425244 FIBCD1Q8N539 461 aa10.72□□□□□ -0.69
CUX1-205ENST00000425244 TTC16Q8NEE8 873 aa10.72□□□□□ -0.69
CUX1-205ENST00000425244 RP9Q8TA86 221 aaKnown RBP10.72□□□□□ -0.69
CUX1-205ENST00000425244 PHF21BQ96EK2 531 aa10.72□□□□□ -0.69
CUX1-205ENST00000425244 HMCESQ96FZ2 354 aa10.72□□□□□ -0.69
CUX1-205ENST00000425244 NR1H4Q96RI1 486 aaPredicted RBP10.72□□□□□ -0.69
CUX1-205ENST00000425244 OLFM1Q99784 485 aa10.72□□□□□ -0.69
CUX1-205ENST00000425244 MRPL57Q9BQC6 102 aaKnown RBP10.72□□□□□ -0.69
CUX1-205ENST00000425244 SPG21Q9NZD8 308 aa10.72□□□□□ -0.69
CUX1-205ENST00000425244 SLC4A7Q9Y6M7 1214 aa10.72□□□□□ -0.69
CUX1-205ENST00000425244 PTPRDP23468 1912 aa10.72□□□□□ -0.69
CUX1-205ENST00000425244 SLCO1B7G3V0H7 640 aa10.71□□□□□ -0.69
CUX1-205ENST00000425244 H3BNX3 289 aa10.71□□□□□ -0.69
CUX1-205ENST00000425244 MT-CO1P00395 513 aa10.71□□□□□ -0.69
CUX1-205ENST00000425244 HMBSP08397 361 aa10.71□□□□□ -0.69
CUX1-205ENST00000425244 MYOGP15173 224 aa10.71□□□□□ -0.69
CUX1-205ENST00000425244 KCNA5P22460 613 aa10.71□□□□□ -0.69
CUX1-205ENST00000425244 HOXC13P31276 330 aa10.71□□□□□ -0.69
CUX1-205ENST00000425244 DSC2Q02487 901 aa10.71□□□□□ -0.69
CUX1-205ENST00000425244 NSUN2Q08J23 767 aaKnown RBP eCLIP10.71□□□□□ -0.69
CUX1-205ENST00000425244 SLC10A7Q0GE19 358 aa10.71□□□□□ -0.69
CUX1-205ENST00000425244 EFEMP1Q12805 493 aa10.71□□□□□ -0.69
CUX1-205ENST00000425244 GPR17Q13304 367 aa10.71□□□□□ -0.69
CUX1-205ENST00000425244 EIF4EBP2Q13542 120 aaPredicted RBP10.71□□□□□ -0.69
CUX1-205ENST00000425244 MMEL1Q495T6 779 aa10.71□□□□□ -0.69
CUX1-205ENST00000425244 IL31Q6EBC2 164 aa10.71□□□□□ -0.69
CUX1-205ENST00000425244 KIAA0930Q6ICG6 404 aaPredicted RBP10.71□□□□□ -0.69
CUX1-205ENST00000425244 MIB1Q86YT6 1006 aa10.71□□□□□ -0.69
CUX1-205ENST00000425244 NUP93Q8N1F7 819 aa10.71□□□□□ -0.69
CUX1-205ENST00000425244 SLC39A11Q8N1S5 342 aa10.71□□□□□ -0.69
CUX1-205ENST00000425244 SNX31Q8N9S9 440 aa10.71□□□□□ -0.69
CUX1-205ENST00000425244 KDM1BQ8NB78 822 aa10.71□□□□□ -0.69
CUX1-205ENST00000425244 EZH1Q92800 747 aaPredicted RBP10.71□□□□□ -0.69
CUX1-205ENST00000425244 EXT2Q93063 718 aa10.71□□□□□ -0.69
CUX1-205ENST00000425244 CNDP1Q96KN2 507 aa10.71□□□□□ -0.69
CUX1-205ENST00000425244 SERPINB11Q96P15 392 aa10.71□□□□□ -0.69
CUX1-205ENST00000425244 WDR41Q9HAD4 459 aa10.71□□□□□ -0.69
CUX1-205ENST00000425244 SP110Q9HB58 689 aa10.71□□□□□ -0.69
CUX1-205ENST00000425244 RC3H2Q9HBD1 1191 aaKnown RBP10.71□□□□□ -0.69
CUX1-205ENST00000425244 STK39Q9UEW8 545 aa10.71□□□□□ -0.69
CUX1-205ENST00000425244 LTBP2Q14767 1821 aa10.71□□□□□ -0.69
CUX1-205ENST00000425244 A0A087X1B8 175 aa10.71□□□□□ -0.69
CUX1-205ENST00000425244 GRXCR1A8MXD5 290 aa10.71□□□□□ -0.69
CUX1-205ENST00000425244 TNFRSF10BO14763 440 aa10.71□□□□□ -0.69
CUX1-205ENST00000425244 FGF18O76093 207 aa10.71□□□□□ -0.69
CUX1-205ENST00000425244 CNTN5O94779 1100 aa10.71□□□□□ -0.69
CUX1-205ENST00000425244 VNN2O95498 520 aa10.71□□□□□ -0.69
CUX1-205ENST00000425244 TBX18O95935 607 aa10.71□□□□□ -0.69
CUX1-205ENST00000425244 SLC4A1P02730 911 aa10.71□□□□□ -0.69
CUX1-205ENST00000425244 SOD2P04179 222 aa10.71□□□□□ -0.69
CUX1-205ENST00000425244 URODP06132 367 aa10.71□□□□□ -0.69
CUX1-205ENST00000425244 CCDC166P0CW27 439 aa10.71□□□□□ -0.69
CUX1-205ENST00000425244 HAPLN1P10915 354 aaPredicted RBP10.71□□□□□ -0.69
CUX1-205ENST00000425244 LAG3P18627 525 aa10.71□□□□□ -0.69
CUX1-205ENST00000425244 TSPAN8P19075 237 aa10.71□□□□□ -0.69
CUX1-205ENST00000425244 ATP5F1P24539 256 aaPredicted RBP10.71□□□□□ -0.69
CUX1-205ENST00000425244 POU4F1Q01851 419 aa10.71□□□□□ -0.69
CUX1-205ENST00000425244 MSLNQ13421 630 aaPredicted RBP10.71□□□□□ -0.69
CUX1-205ENST00000425244 MED21Q13503 144 aa10.71□□□□□ -0.69
CUX1-205ENST00000425244 FAM83EQ2M2I3 478 aa10.71□□□□□ -0.69
CUX1-205ENST00000425244 FOXB2Q5VYV0 432 aa10.71□□□□□ -0.69
CUX1-205ENST00000425244 ISLR2Q6UXK2 745 aa10.71□□□□□ -0.69
CUX1-205ENST00000425244 KBTBD6Q86V97 674 aa10.71□□□□□ -0.69
CUX1-205ENST00000425244 CIR1Q86X95 450 aaPredicted RBP10.71□□□□□ -0.69
CUX1-205ENST00000425244 FAM156AQ8NDB6 213 aa10.71□□□□□ -0.69
CUX1-205ENST00000425244 PTCD2Q8WV60 388 aaKnown RBP10.71□□□□□ -0.69
CUX1-205ENST00000425244 CLSTN3Q9BQT9 956 aa10.71□□□□□ -0.69
CUX1-205ENST00000425244 NOL6Q9H6R4 1146 aaKnown RBP10.71□□□□□ -0.69
CUX1-205ENST00000425244 IGSF5Q9NSI5 407 aa10.71□□□□□ -0.69
CUX1-205ENST00000425244 CLIC5Q9NZA1 410 aa10.71□□□□□ -0.69
CUX1-205ENST00000425244 COL4A6Q14031 1691 aa10.71□□□□□ -0.7
CUX1-205ENST00000425244 BPTFQ12830 3046 aa10.71□□□□□ -0.7
CUX1-205ENST00000425244 PTPRSQ13332 1948 aa10.71□□□□□ -0.7
CUX1-205ENST00000425244 HEATR9A2RTY3 570 aa10.71□□□□□ -0.7
CUX1-205ENST00000425244 OR51F1A6NGY5 319 aa10.71□□□□□ -0.7
CUX1-205ENST00000425244 CAPN8A6NHC0 703 aa10.71□□□□□ -0.7
CUX1-205ENST00000425244 CCDC85CA6NKD9 419 aa10.71□□□□□ -0.7
CUX1-205ENST00000425244 KCNU1A8MYU2 1149 aa10.71□□□□□ -0.7
CUX1-205ENST00000425244 SERPINH1P50454 418 aaKnown RBP10.71□□□□□ -0.7
CUX1-205ENST00000425244 KPNA2P52292 529 aaKnown RBP10.71□□□□□ -0.7
CUX1-205ENST00000425244 MLLT6P55198 1093 aaPredicted RBP10.71□□□□□ -0.7
CUX1-205ENST00000425244 TBX4P57082 545 aa10.71□□□□□ -0.7
CUX1-205ENST00000425244 ALFQ53S48 1182 aa10.71□□□□□ -0.7
CUX1-205ENST00000425244 THEMIS2Q5TEJ8 643 aa10.71□□□□□ -0.7
CUX1-205ENST00000425244 MARC1Q5VT66 337 aa10.71□□□□□ -0.7
CUX1-205ENST00000425244 GK5Q6ZS86 529 aa10.71□□□□□ -0.7
CUX1-205ENST00000425244 PIWIL4Q7Z3Z4 852 aaKnown RBP10.71□□□□□ -0.7
CUX1-205ENST00000425244 LCA5Q86VQ0 697 aa10.71□□□□□ -0.7
CUX1-205ENST00000425244 KLHDC8BQ8IXV7 354 aa10.71□□□□□ -0.7
CUX1-205ENST00000425244 CMTR2Q8IYT2 770 aaKnown RBP10.71□□□□□ -0.7
CUX1-205ENST00000425244 SCML4Q8N228 414 aa10.71□□□□□ -0.7
CUX1-205ENST00000425244 FBXO32Q969P5 355 aa10.71□□□□□ -0.7
CUX1-205ENST00000425244 PSMG2Q969U7 264 aa10.71□□□□□ -0.7
CUX1-205ENST00000425244 FUBP3Q96I24 572 aaKnown RBP eCLIP10.71□□□□□ -0.7
CUX1-205ENST00000425244 PLEKHG4BQ96PX9 1271 aa10.71□□□□□ -0.7
CUX1-205ENST00000425244 GCNAQ96QF7 691 aa10.71□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms