RNA–Protein interactions for RNA: ENST00000422491.6

USP54-204, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best) BASIC

Gene USP54, Length 2,777 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-204ENST00000422491 KLHL3Q9UH77 587 aa10.74□□□□□ -0.69
USP54-204ENST00000422491 POU2F3Q9UKI9 436 aa10.74□□□□□ -0.69
USP54-204ENST00000422491 TRPC5Q9UL62 973 aaPredicted RBP10.74□□□□□ -0.69
USP54-204ENST00000422491 RLFQ13129 1914 aa10.73□□□□□ -0.69
USP54-204ENST00000422491 IGKV6-21A0A0C4DH24 114 aa10.73□□□□□ -0.69
USP54-204ENST00000422491 A0A0J9YYE9 177 aa10.73□□□□□ -0.69
USP54-204ENST00000422491 ATP6AP2A0A1C7CYW4 349 aa10.73□□□□□ -0.69
USP54-204ENST00000422491 A8MT66 165 aa10.73□□□□□ -0.69
USP54-204ENST00000422491 ZBTB42B2RXF5 422 aa10.73□□□□□ -0.69
USP54-204ENST00000422491 DCLK1O15075 740 aa10.73□□□□□ -0.69
USP54-204ENST00000422491 MSI1O43347 362 aaKnown RBP10.73□□□□□ -0.69
USP54-204ENST00000422491 ATP6AP2O75787 350 aa10.73□□□□□ -0.69
USP54-204ENST00000422491 STAU1O95793 577 aaKnown RBP10.73□□□□□ -0.69
USP54-204ENST00000422491 MYL3P08590 195 aa10.73□□□□□ -0.69
USP54-204ENST00000422491 CAPN3P20807 821 aa10.73□□□□□ -0.69
USP54-204ENST00000422491 UBA1P22314 1058 aaKnown RBP10.73□□□□□ -0.69
USP54-204ENST00000422491 CRHBPP24387 322 aa10.73□□□□□ -0.69
USP54-204ENST00000422491 SCNN1AP37088 669 aa10.73□□□□□ -0.69
USP54-204ENST00000422491 POLD2P49005 469 aa10.73□□□□□ -0.69
USP54-204ENST00000422491 HNRNPFP52597 415 aaKnown RBP10.73□□□□□ -0.69
USP54-204ENST00000422491 SNX16P57768 344 aa10.73□□□□□ -0.69
USP54-204ENST00000422491 CAPRIN1Q14444 709 aaKnown RBP10.73□□□□□ -0.69
USP54-204ENST00000422491 SLC10A6Q3KNW5 377 aa10.73□□□□□ -0.69
USP54-204ENST00000422491 TECRLQ5HYJ1 363 aa10.73□□□□□ -0.69
USP54-204ENST00000422491 SPARTQ8N0X7 666 aa10.73□□□□□ -0.69
USP54-204ENST00000422491 ARL10Q8N8L6 244 aa10.73□□□□□ -0.69
USP54-204ENST00000422491 MAGED4Q96JG8 741 aa10.73□□□□□ -0.69
USP54-204ENST00000422491 MRPL45Q9BRJ2 306 aaKnown RBP10.73□□□□□ -0.69
USP54-204ENST00000422491 FUNDC2Q9BWH2 189 aa10.73□□□□□ -0.69
USP54-204ENST00000422491 ATP13A3Q9H7F0 1226 aa10.73□□□□□ -0.69
USP54-204ENST00000422491 MAGEE1Q9HCI5 957 aa10.73□□□□□ -0.69
USP54-204ENST00000422491 IGSF5Q9NSI5 407 aa10.73□□□□□ -0.69
USP54-204ENST00000422491 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP10.73□□□□□ -0.69
USP54-204ENST00000422491 NOX1Q9Y5S8 564 aa10.73□□□□□ -0.69
USP54-204ENST00000422491 ZFC3H1O60293 1989 aaKnown RBP10.73□□□□□ -0.69
USP54-204ENST00000422491 NR5A2O00482 541 aa10.73□□□□□ -0.69
USP54-204ENST00000422491 UBFD1O14562 309 aaKnown RBP10.73□□□□□ -0.69
USP54-204ENST00000422491 INPP4BO15327 924 aa10.73□□□□□ -0.69
USP54-204ENST00000422491 IPO13O94829 963 aaKnown RBP10.73□□□□□ -0.69
USP54-204ENST00000422491 MYO1DO94832 1006 aa10.73□□□□□ -0.69
USP54-204ENST00000422491 MTHFD1P11586 935 aaKnown RBP10.73□□□□□ -0.69
USP54-204ENST00000422491 PCYT1AP49585 367 aa10.73□□□□□ -0.69
USP54-204ENST00000422491 TAS2R39P59534 338 aa10.73□□□□□ -0.69
USP54-204ENST00000422491 OCA2Q04671 838 aa10.73□□□□□ -0.69
USP54-204ENST00000422491 MBTD1Q05BQ5 628 aa10.73□□□□□ -0.69
USP54-204ENST00000422491 GALNT1Q10472 559 aaPredicted RBP10.73□□□□□ -0.69
USP54-204ENST00000422491 TRIM32Q13049 653 aa10.73□□□□□ -0.69
USP54-204ENST00000422491 CTBP1Q13363 440 aa10.73□□□□□ -0.69
USP54-204ENST00000422491 SNX17Q15036 470 aa10.73□□□□□ -0.69
USP54-204ENST00000422491 SF3B4Q15427 424 aaKnown RBP eCLIP10.73□□□□□ -0.69
USP54-204ENST00000422491 UGP2Q16851 508 aa10.73□□□□□ -0.69
USP54-204ENST00000422491 PYCR3Q53H96 274 aa10.73□□□□□ -0.69
USP54-204ENST00000422491 OTUD1Q5VV17 481 aaPredicted RBP10.73□□□□□ -0.69
USP54-204ENST00000422491 IQSEC1Q6DN90 963 aa10.73□□□□□ -0.69
USP54-204ENST00000422491 CRTC3Q6UUV7 619 aa10.73□□□□□ -0.69
USP54-204ENST00000422491 CYP2U1Q7Z449 544 aa10.73□□□□□ -0.69
USP54-204ENST00000422491 LEMD2Q8NC56 503 aa10.73□□□□□ -0.69
USP54-204ENST00000422491 TBRG4Q969Z0 631 aaKnown RBP eCLIP10.73□□□□□ -0.69
USP54-204ENST00000422491 VMP1Q96GC9 406 aa10.73□□□□□ -0.69
USP54-204ENST00000422491 BTN2A3PQ96KV6 586 aa10.73□□□□□ -0.69
USP54-204ENST00000422491 RPL10LQ96L21 214 aaKnown RBP10.73□□□□□ -0.69
USP54-204ENST00000422491 C3orf30Q96M34 536 aa10.73□□□□□ -0.69
USP54-204ENST00000422491 GMLQ99445 158 aa10.73□□□□□ -0.69
USP54-204ENST00000422491 SLC30A3Q99726 388 aa10.73□□□□□ -0.69
USP54-204ENST00000422491 EHD1Q9H4M9 534 aa10.73□□□□□ -0.69
USP54-204ENST00000422491 ASB7Q9H672 318 aa10.73□□□□□ -0.69
USP54-204ENST00000422491 VTA1Q9NP79 307 aa10.73□□□□□ -0.69
USP54-204ENST00000422491 CAMSAP3Q9P1Y5 1249 aaPredicted RBP10.73□□□□□ -0.69
USP54-204ENST00000422491 ENPP5Q9UJA9 477 aa10.73□□□□□ -0.69
USP54-204ENST00000422491 NDUFAF1Q9Y375 327 aa10.73□□□□□ -0.69
USP54-204ENST00000422491 GAS2O43903 313 aaKnown RBP10.72□□□□□ -0.69
USP54-204ENST00000422491 UGT2B11O75310 529 aa10.72□□□□□ -0.69
USP54-204ENST00000422491 ALBP02768 609 aa10.72□□□□□ -0.69
USP54-204ENST00000422491 HTR1AP08908 422 aa10.72□□□□□ -0.69
USP54-204ENST00000422491 HTR1BP28222 390 aa10.72□□□□□ -0.69
USP54-204ENST00000422491 STX1BP61266 288 aa10.72□□□□□ -0.69
USP54-204ENST00000422491 DNASE1L3Q13609 305 aa10.72□□□□□ -0.69
USP54-204ENST00000422491 STXBP2Q15833 593 aa10.72□□□□□ -0.69
USP54-204ENST00000422491 VPS26BQ4G0F5 336 aa10.72□□□□□ -0.69
USP54-204ENST00000422491 CLEC6AQ6EIG7 209 aa10.72□□□□□ -0.69
USP54-204ENST00000422491 LINC00299Q6ZSB3 139 aa10.72□□□□□ -0.69
USP54-204ENST00000422491 R3HCC1LQ7Z5L2 792 aaKnown RBP10.72□□□□□ -0.69
USP54-204ENST00000422491 DSG4Q86SJ6 1040 aa10.72□□□□□ -0.69
USP54-204ENST00000422491 LINC00523Q86TU6 105 aa10.72□□□□□ -0.69
USP54-204ENST00000422491 ITIH5Q86UX2 942 aa10.72□□□□□ -0.69
USP54-204ENST00000422491 TBC1D21Q8IYX1 336 aa10.72□□□□□ -0.69
USP54-204ENST00000422491 MFSD4AQ8N468 514 aa10.72□□□□□ -0.69
USP54-204ENST00000422491 ZFP90Q8TF47 636 aa10.72□□□□□ -0.69
USP54-204ENST00000422491 UBXN10Q96LJ8 280 aa10.72□□□□□ -0.69
USP54-204ENST00000422491 LPIN3Q9BQK8 851 aa10.72□□□□□ -0.69
USP54-204ENST00000422491 MTRRQ9UBK8 725 aa10.72□□□□□ -0.69
USP54-204ENST00000422491 PCDHA9Q9Y5H5 950 aa10.72□□□□□ -0.69
USP54-204ENST00000422491 A0A087X1B8 175 aa10.72□□□□□ -0.69
USP54-204ENST00000422491 LDLRP01130 860 aa10.72□□□□□ -0.69
USP54-204ENST00000422491 CYP2C8P10632 490 aa10.72□□□□□ -0.69
USP54-204ENST00000422491 LCP1P13796 627 aa10.72□□□□□ -0.69
USP54-204ENST00000422491 NFKB1P19838 968 aa10.72□□□□□ -0.69
USP54-204ENST00000422491 CHRM3P20309 590 aa10.72□□□□□ -0.69
USP54-204ENST00000422491 NR4A1P22736 598 aa10.72□□□□□ -0.69
USP54-204ENST00000422491 NOS2P35228 1153 aa10.72□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 58.7 ms