RNA–Protein interactions for RNA: ENST00000378839.1

CCDC3-202, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene CCDC3, Length 3,180 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-202ENST00000378839 LRRC8DQ7L1W4 858 aa13.42□□□□□ -0.26
CCDC3-202ENST00000378839 ADGRG6Q86SQ4 1221 aa13.42□□□□□ -0.26
CCDC3-202ENST00000378839 LGI2Q8N0V4 545 aa13.42□□□□□ -0.26
CCDC3-202ENST00000378839 RP9Q8TA86 221 aaKnown RBP13.42□□□□□ -0.26
CCDC3-202ENST00000378839 CD99L2Q8TCZ2 262 aa13.42□□□□□ -0.26
CCDC3-202ENST00000378839 TRIB3Q96RU7 358 aa13.42□□□□□ -0.26
CCDC3-202ENST00000378839 NCKIPSDQ9NZQ3 722 aa13.42□□□□□ -0.26
CCDC3-202ENST00000378839 H3BMM5 538 aa13.42□□□□□ -0.26
CCDC3-202ENST00000378839 SMIM24O75264 130 aa13.42□□□□□ -0.26
CCDC3-202ENST00000378839 MT-CO1P00395 513 aa13.42□□□□□ -0.26
CCDC3-202ENST00000378839 BMP1P13497 986 aa13.42□□□□□ -0.26
CCDC3-202ENST00000378839 ATXN3P54252 364 aaPredicted RBP13.42□□□□□ -0.26
CCDC3-202ENST00000378839 RPS24P62847 133 aaKnown RBP13.42□□□□□ -0.26
CCDC3-202ENST00000378839 IRX1P78414 480 aaPredicted RBP13.42□□□□□ -0.26
CCDC3-202ENST00000378839 ACVR1Q04771 509 aa13.42□□□□□ -0.26
CCDC3-202ENST00000378839 FAM83EQ2M2I3 478 aa13.42□□□□□ -0.26
CCDC3-202ENST00000378839 SETMARQ53H47 684 aaPredicted RBP13.42□□□□□ -0.26
CCDC3-202ENST00000378839 IRGCQ6NXR0 463 aa13.42□□□□□ -0.26
CCDC3-202ENST00000378839 PIWIL4Q7Z3Z4 852 aaKnown RBP13.42□□□□□ -0.26
CCDC3-202ENST00000378839 CUZD1Q86UP6 607 aa13.42□□□□□ -0.26
CCDC3-202ENST00000378839 KYQ8NBH2 561 aa13.42□□□□□ -0.26
CCDC3-202ENST00000378839 FAM156AQ8NDB6 213 aa13.42□□□□□ -0.26
CCDC3-202ENST00000378839 PRICKLE1Q96MT3 831 aaPredicted RBP13.42□□□□□ -0.26
CCDC3-202ENST00000378839 SRRDQ9UH36 339 aa13.42□□□□□ -0.26
CCDC3-202ENST00000378839 MED16Q9Y2X0 877 aa13.42□□□□□ -0.26
CCDC3-202ENST00000378839 PTGDR2Q9Y5Y4 395 aa13.42□□□□□ -0.26
CCDC3-202ENST00000378839 A0A1B0GTL3 188 aa13.41□□□□□ -0.26
CCDC3-202ENST00000378839 KLKB1P03952 638 aa13.41□□□□□ -0.26
CCDC3-202ENST00000378839 UBTFL6P0CB48 400 aaPredicted RBP13.41□□□□□ -0.26
CCDC3-202ENST00000378839 PARP15Q460N3 678 aa13.41□□□□□ -0.26
CCDC3-202ENST00000378839 FOXB2Q5VYV0 432 aa13.41□□□□□ -0.26
CCDC3-202ENST00000378839 CHSY3Q70JA7 882 aa13.41□□□□□ -0.26
CCDC3-202ENST00000378839 PDSS2Q86YH6 399 aa13.41□□□□□ -0.26
CCDC3-202ENST00000378839 LMNTD2Q8IXW0 634 aa13.41□□□□□ -0.26
CCDC3-202ENST00000378839 PPFIBP2Q8ND30 876 aa13.41□□□□□ -0.26
CCDC3-202ENST00000378839 GDPD5Q8WTR4 605 aa13.41□□□□□ -0.26
CCDC3-202ENST00000378839 EXOC2Q96KP1 924 aa13.41□□□□□ -0.26
CCDC3-202ENST00000378839 C3orf30Q96M34 536 aa13.41□□□□□ -0.26
CCDC3-202ENST00000378839 DLGAP2Q9P1A6 1054 aa13.41□□□□□ -0.26
CCDC3-202ENST00000378839 ZFP37Q9Y6Q3 630 aaPredicted RBP13.41□□□□□ -0.26
CCDC3-202ENST00000378839 CHD5Q8TDI0 1954 aa13.41□□□□□ -0.26
CCDC3-202ENST00000378839 OR6C75A6NL08 312 aa13.41□□□□□ -0.26
CCDC3-202ENST00000378839 SLC38A8A6NNN8 435 aa13.41□□□□□ -0.26
CCDC3-202ENST00000378839 RNASEH1O60930 286 aaKnown RBP13.41□□□□□ -0.26
CCDC3-202ENST00000378839 DSG1Q02413 1049 aa13.41□□□□□ -0.26
CCDC3-202ENST00000378839 ACAP2Q15057 778 aa13.41□□□□□ -0.26
CCDC3-202ENST00000378839 OR4D1Q15615 310 aa13.41□□□□□ -0.26
CCDC3-202ENST00000378839 UNC50Q53HI1 259 aa13.41□□□□□ -0.26
CCDC3-202ENST00000378839 SPATA17Q96L03 361 aa13.41□□□□□ -0.26
CCDC3-202ENST00000378839 CYP2S1Q96SQ9 504 aa13.41□□□□□ -0.26
CCDC3-202ENST00000378839 VN1R3Q9BXE9 311 aa13.41□□□□□ -0.26
CCDC3-202ENST00000378839 GALPQ9UBC7 116 aa13.41□□□□□ -0.26
CCDC3-202ENST00000378839 FBP2O00757 339 aa13.4□□□□□ -0.26
CCDC3-202ENST00000378839 CFLARO15519 480 aa13.4□□□□□ -0.26
CCDC3-202ENST00000378839 GALTP07902 379 aa13.4□□□□□ -0.26
CCDC3-202ENST00000378839 CD1DP15813 335 aa13.4□□□□□ -0.26
CCDC3-202ENST00000378839 FDXRP22570 491 aa13.4□□□□□ -0.26
CCDC3-202ENST00000378839 CDKN1CP49918 316 aaPredicted RBP13.4□□□□□ -0.26
CCDC3-202ENST00000378839 HK2P52789 917 aa13.4□□□□□ -0.26
CCDC3-202ENST00000378839 AQP4P55087 323 aa13.4□□□□□ -0.26
CCDC3-202ENST00000378839 CDH13P55290 713 aa13.4□□□□□ -0.26
CCDC3-202ENST00000378839 PRAMEP78395 509 aa13.4□□□□□ -0.26
CCDC3-202ENST00000378839 AGAP9Q5VTM2 703 aa13.4□□□□□ -0.26
CCDC3-202ENST00000378839 GALNT7Q86SF2 657 aa13.4□□□□□ -0.26
CCDC3-202ENST00000378839 CALML6Q8TD86 181 aa13.4□□□□□ -0.26
CCDC3-202ENST00000378839 MEAF6Q9HAF1 191 aa13.4□□□□□ -0.26
CCDC3-202ENST00000378839 FBRSL1Q9HCM7 1045 aaKnown RBP13.4□□□□□ -0.26
CCDC3-202ENST00000378839 STARD7Q9NQZ5 370 aa13.4□□□□□ -0.26
CCDC3-202ENST00000378839 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP13.4□□□□□ -0.26
CCDC3-202ENST00000378839 STK39Q9UEW8 545 aa13.4□□□□□ -0.26
CCDC3-202ENST00000378839 A0A1B0GVG6 124 aa13.4□□□□□ -0.26
CCDC3-202ENST00000378839 LOC101059915A0A1B0GWI6 518 aaPredicted RBP13.4□□□□□ -0.26
CCDC3-202ENST00000378839 RTN3O95197 1032 aaPredicted RBP13.4□□□□□ -0.26
CCDC3-202ENST00000378839 SIX3O95343 332 aaPredicted RBP13.4□□□□□ -0.26
CCDC3-202ENST00000378839 ALDH2P05091 517 aa13.4□□□□□ -0.26
CCDC3-202ENST00000378839 ENO3P13929 434 aaPredicted RBP13.4□□□□□ -0.26
CCDC3-202ENST00000378839 APLP1P51693 650 aa13.4□□□□□ -0.26
CCDC3-202ENST00000378839 STON2Q8WXE9 905 aa13.4□□□□□ -0.26
CCDC3-202ENST00000378839 IFT43Q96FT9 208 aa13.4□□□□□ -0.26
CCDC3-202ENST00000378839 POLR1EQ9GZS1 481 aaKnown RBP13.4□□□□□ -0.26
CCDC3-202ENST00000378839 CREBZFQ9NS37 354 aa13.4□□□□□ -0.26
CCDC3-202ENST00000378839 GKN1Q9NS71 199 aa13.4□□□□□ -0.26
CCDC3-202ENST00000378839 GIMAP2Q9UG22 337 aa13.4□□□□□ -0.26
CCDC3-202ENST00000378839 ATP6AP2A0A1C7CYW4 349 aa13.4□□□□□ -0.26
CCDC3-202ENST00000378839 MOXD2PA6NHM9 499 aa13.4□□□□□ -0.26
CCDC3-202ENST00000378839 SLCO1B7G3V0H7 640 aa13.4□□□□□ -0.26
CCDC3-202ENST00000378839 CD3EAPO15446 510 aaKnown RBP13.4□□□□□ -0.26
CCDC3-202ENST00000378839 ATP6AP2O75787 350 aa13.4□□□□□ -0.26
CCDC3-202ENST00000378839 PRLP01236 227 aa13.4□□□□□ -0.26
CCDC3-202ENST00000378839 MTHFD2P13995 350 aa13.4□□□□□ -0.26
CCDC3-202ENST00000378839 FOXA1P55317 472 aa13.4□□□□□ -0.26
CCDC3-202ENST00000378839 POLE2P56282 527 aa13.4□□□□□ -0.26
CCDC3-202ENST00000378839 RING1Q06587 406 aa13.4□□□□□ -0.26
CCDC3-202ENST00000378839 UGT3A2Q3SY77 523 aa13.4□□□□□ -0.26
CCDC3-202ENST00000378839 FBXO48Q5FWF7 155 aa13.4□□□□□ -0.26
CCDC3-202ENST00000378839 ZNF678Q5SXM1 525 aa13.4□□□□□ -0.26
CCDC3-202ENST00000378839 WDR41Q9HAD4 459 aa13.4□□□□□ -0.26
CCDC3-202ENST00000378839 PCDHB7Q9Y5E2 793 aa13.4□□□□□ -0.26
CCDC3-202ENST00000378839 SH3BP2P78314 561 aa13.39□□□□□ -0.27
CCDC3-202ENST00000378839 MRPS35P82673 323 aaKnown RBP13.39□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms