RNA–Protein interactions for RNA: ENST00000341247.8

LIMA1-201, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMA1, Length 3,706 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-201ENST00000341247 SDHDO14521 159 aa10.37□□□□□ -0.75
LIMA1-201ENST00000341247 CD3EAPO15446 510 aaKnown RBP10.37□□□□□ -0.75
LIMA1-201ENST00000341247 SMNDC1O75940 238 aaKnown RBP eCLIP10.37□□□□□ -0.75
LIMA1-201ENST00000341247 FMO4P31512 558 aa10.37□□□□□ -0.75
LIMA1-201ENST00000341247 CLCN5P51795 746 aa10.37□□□□□ -0.75
LIMA1-201ENST00000341247 IL10RBQ08334 325 aa10.37□□□□□ -0.75
LIMA1-201ENST00000341247 TAF12Q16514 161 aa10.37□□□□□ -0.75
LIMA1-201ENST00000341247 FBXO22Q8NEZ5 403 aa10.37□□□□□ -0.75
LIMA1-201ENST00000341247 TTPALQ9BTX7 342 aa10.37□□□□□ -0.75
LIMA1-201ENST00000341247 MRM3Q9HC36 420 aaKnown RBP10.37□□□□□ -0.75
LIMA1-201ENST00000341247 TRPC7Q9HCX4 862 aa10.37□□□□□ -0.75
LIMA1-201ENST00000341247 ADA2Q9NZK5 511 aa10.37□□□□□ -0.75
LIMA1-201ENST00000341247 GREB1Q4ZG55 1949 aa10.37□□□□□ -0.75
LIMA1-201ENST00000341247 DOCK4Q8N1I0 1966 aa10.37□□□□□ -0.75
LIMA1-201ENST00000341247 UBXN8O00124 270 aa10.37□□□□□ -0.75
LIMA1-201ENST00000341247 CCNT2O60583 730 aaKnown RBP10.37□□□□□ -0.75
LIMA1-201ENST00000341247 GPC4O75487 556 aa10.37□□□□□ -0.75
LIMA1-201ENST00000341247 SERPINF2P08697 491 aa10.37□□□□□ -0.75
LIMA1-201ENST00000341247 DPP6P42658 865 aa10.37□□□□□ -0.75
LIMA1-201ENST00000341247 MAGEA11P43364 429 aa10.37□□□□□ -0.75
LIMA1-201ENST00000341247 NRG1Q02297 640 aaPredicted RBP10.37□□□□□ -0.75
LIMA1-201ENST00000341247 NSUN2Q08J23 767 aaKnown RBP eCLIP10.37□□□□□ -0.75
LIMA1-201ENST00000341247 CDC16Q13042 620 aa10.37□□□□□ -0.75
LIMA1-201ENST00000341247 PFKFB4Q16877 469 aa10.37□□□□□ -0.75
LIMA1-201ENST00000341247 SPOUT1Q5T280 376 aaKnown RBP10.37□□□□□ -0.75
LIMA1-201ENST00000341247 TMCO4Q5TGY1 634 aa10.37□□□□□ -0.75
LIMA1-201ENST00000341247 ZNF549Q6P9A3 640 aa10.37□□□□□ -0.75
LIMA1-201ENST00000341247 PGM2L1Q6PCE3 622 aa10.37□□□□□ -0.75
LIMA1-201ENST00000341247 DHDDSQ86SQ9 333 aa10.37□□□□□ -0.75
LIMA1-201ENST00000341247 LPCAT1Q8NF37 534 aa10.37□□□□□ -0.75
LIMA1-201ENST00000341247 ARNT2Q9HBZ2 717 aa10.37□□□□□ -0.75
LIMA1-201ENST00000341247 LRCH1Q9Y2L9 728 aa10.37□□□□□ -0.75
LIMA1-201ENST00000341247 SPO11Q9Y5K1 396 aa10.37□□□□□ -0.75
LIMA1-201ENST00000341247 IGLV3-10A0A075B6K4 115 aa10.36□□□□□ -0.75
LIMA1-201ENST00000341247 CCDC189A1A4V9 331 aa10.36□□□□□ -0.75
LIMA1-201ENST00000341247 ARVCFO00192 962 aa10.36□□□□□ -0.75
LIMA1-201ENST00000341247 PRAMEF11O60813 436 aa10.36□□□□□ -0.75
LIMA1-201ENST00000341247 ALDH1A1P00352 501 aa10.36□□□□□ -0.75
LIMA1-201ENST00000341247 FGFR3P22607 806 aa10.36□□□□□ -0.75
LIMA1-201ENST00000341247 CA8P35219 290 aa10.36□□□□□ -0.75
LIMA1-201ENST00000341247 ATP5C1P36542 298 aaKnown RBP10.36□□□□□ -0.75
LIMA1-201ENST00000341247 DSG1Q02413 1049 aa10.36□□□□□ -0.75
LIMA1-201ENST00000341247 GNA12Q03113 381 aa10.36□□□□□ -0.75
LIMA1-201ENST00000341247 MRPL58Q14197 206 aaKnown RBP10.36□□□□□ -0.75
LIMA1-201ENST00000341247 MMEL1Q495T6 779 aa10.36□□□□□ -0.75
LIMA1-201ENST00000341247 PIWIL4Q7Z3Z4 852 aaKnown RBP10.36□□□□□ -0.75
LIMA1-201ENST00000341247 OR4K2Q8NGD2 314 aa10.36□□□□□ -0.75
LIMA1-201ENST00000341247 SPPL2BQ8TCT7 592 aa10.36□□□□□ -0.75
LIMA1-201ENST00000341247 GDPD5Q8WTR4 605 aa10.36□□□□□ -0.75
LIMA1-201ENST00000341247 ESAMQ96AP7 390 aa10.36□□□□□ -0.75
LIMA1-201ENST00000341247 NSUN5Q96P11 429 aaKnown RBP10.36□□□□□ -0.75
LIMA1-201ENST00000341247 ZBED2Q9BTP6 218 aa10.36□□□□□ -0.75
LIMA1-201ENST00000341247 CINPQ9BW66 212 aaPredicted RBP10.36□□□□□ -0.75
LIMA1-201ENST00000341247 EBF3Q9H4W6 596 aa10.36□□□□□ -0.75
LIMA1-201ENST00000341247 WDR41Q9HAD4 459 aa10.36□□□□□ -0.75
LIMA1-201ENST00000341247 ATP13A1Q9HD20 1204 aa10.36□□□□□ -0.75
LIMA1-201ENST00000341247 HMX1Q9NP08 348 aaPredicted RBP10.36□□□□□ -0.75
LIMA1-201ENST00000341247 OLA1Q9NTK5 396 aaKnown RBP10.36□□□□□ -0.75
LIMA1-201ENST00000341247 MOXD2PA6NHM9 499 aa10.36□□□□□ -0.75
LIMA1-201ENST00000341247 UBFD1O14562 309 aaKnown RBP10.36□□□□□ -0.75
LIMA1-201ENST00000341247 INPPL1O15357 1258 aa10.36□□□□□ -0.75
LIMA1-201ENST00000341247 BMP1P13497 986 aa10.36□□□□□ -0.75
LIMA1-201ENST00000341247 KPNA2P52292 529 aaKnown RBP10.36□□□□□ -0.75
LIMA1-201ENST00000341247 PLD1Q13393 1074 aa10.36□□□□□ -0.75
LIMA1-201ENST00000341247 PARP15Q460N3 678 aa10.36□□□□□ -0.75
LIMA1-201ENST00000341247 AGKQ53H12 422 aa10.36□□□□□ -0.75
LIMA1-201ENST00000341247 SFT2D3Q587I9 215 aa10.36□□□□□ -0.75
LIMA1-201ENST00000341247 METTL21CQ5VZV1 264 aa10.36□□□□□ -0.75
LIMA1-201ENST00000341247 PAF1Q8N7H5 531 aa10.36□□□□□ -0.75
LIMA1-201ENST00000341247 DCBLD1Q8N8Z6 715 aa10.36□□□□□ -0.75
LIMA1-201ENST00000341247 PPP1R2P1Q96PQ5 205 aa10.36□□□□□ -0.75
LIMA1-201ENST00000341247 ECSITQ9BQ95 431 aa10.36□□□□□ -0.75
LIMA1-201ENST00000341247 MFSD1Q9H3U5 465 aa10.36□□□□□ -0.75
LIMA1-201ENST00000341247 SARS2Q9NP81 518 aaKnown RBP10.36□□□□□ -0.75
LIMA1-201ENST00000341247 BATF3Q9NR55 127 aa10.36□□□□□ -0.75
LIMA1-201ENST00000341247 SQORQ9Y6N5 450 aa10.36□□□□□ -0.75
LIMA1-201ENST00000341247 SPEGQ15772 3267 aa10.36□□□□□ -0.75
LIMA1-201ENST00000341247 MROH6A6NGR9 719 aa10.36□□□□□ -0.75
LIMA1-201ENST00000341247 SLC7A4O43246 635 aa10.36□□□□□ -0.75
LIMA1-201ENST00000341247 MAP3K13O43283 966 aa10.36□□□□□ -0.75
LIMA1-201ENST00000341247 ACSL4O60488 711 aa10.36□□□□□ -0.75
LIMA1-201ENST00000341247 SNAP91O60641 907 aa10.36□□□□□ -0.75
LIMA1-201ENST00000341247 KLKB1P03952 638 aa10.36□□□□□ -0.75
LIMA1-201ENST00000341247 PAX3P23760 479 aa10.36□□□□□ -0.75
LIMA1-201ENST00000341247 SOX11P35716 441 aa10.36□□□□□ -0.75
LIMA1-201ENST00000341247 PDAP1Q13442 181 aaKnown RBP10.36□□□□□ -0.75
LIMA1-201ENST00000341247 FLOT2Q14254 428 aa10.36□□□□□ -0.75
LIMA1-201ENST00000341247 BNC2Q6ZN30 1099 aaPredicted RBP10.36□□□□□ -0.75
LIMA1-201ENST00000341247 KIAA0408Q6ZU52 694 aa10.36□□□□□ -0.75
LIMA1-201ENST00000341247 ISCA2Q86U28 154 aa10.36□□□□□ -0.75
LIMA1-201ENST00000341247 PTGR2Q8N8N7 351 aaPredicted RBP10.36□□□□□ -0.75
LIMA1-201ENST00000341247 OR6K2Q8NGY2 324 aa10.36□□□□□ -0.75
LIMA1-201ENST00000341247 AUTS2Q8WXX7 1259 aa10.36□□□□□ -0.75
LIMA1-201ENST00000341247 TSPAN17Q96FV3 270 aa10.36□□□□□ -0.75
LIMA1-201ENST00000341247 KCNA7Q96RP8 456 aa10.36□□□□□ -0.75
LIMA1-201ENST00000341247 MUC3BQ9H195 1237 aa10.36□□□□□ -0.75
LIMA1-201ENST00000341247 IL1RL2Q9HB29 575 aa10.36□□□□□ -0.75
LIMA1-201ENST00000341247 VTI1BQ9UEU0 232 aa10.36□□□□□ -0.75
LIMA1-201ENST00000341247 DNMT3LQ9UJW3 386 aa10.36□□□□□ -0.75
LIMA1-201ENST00000341247 LOC285095A0A1B0GVY8 99 aa10.35□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms