RNA–Protein interactions for RNA: ENST00000334448.5

CCDC88C-202, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best)

Gene CCDC88C, Length 1,055 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-202ENST00000334448 DNAJC1Q96KC8 554 aaKnown RBP14.96□□□□□ -0.01
CCDC88C-202ENST00000334448 RBBP8Q99708 897 aa14.96□□□□□ -0.01
CCDC88C-202ENST00000334448 P2RY13Q9BPV8 354 aa14.96□□□□□ -0.01
CCDC88C-202ENST00000334448 ZDHHC6Q9H6R6 413 aa14.96□□□□□ -0.01
CCDC88C-202ENST00000334448 UGT1A7Q9HAW7 530 aa14.96□□□□□ -0.01
CCDC88C-202ENST00000334448 UGT1A10Q9HAW8 530 aa14.96□□□□□ -0.01
CCDC88C-202ENST00000334448 UGT1A8Q9HAW9 530 aa14.96□□□□□ -0.01
CCDC88C-202ENST00000334448 KCNK12Q9HB15 430 aa14.96□□□□□ -0.01
CCDC88C-202ENST00000334448 PPANQ9NQ55 473 aaKnown RBP14.96□□□□□ -0.01
CCDC88C-202ENST00000334448 IL17CQ9P0M4 197 aa14.96□□□□□ -0.01
CCDC88C-202ENST00000334448 IL36AQ9UHA7 158 aa14.96□□□□□ -0.01
CCDC88C-202ENST00000334448 TBK1Q9UHD2 729 aa14.96□□□□□ -0.01
CCDC88C-202ENST00000334448 PSAT1Q9Y617 370 aa14.96□□□□□ -0.01
CCDC88C-202ENST00000334448 ARL5AQ9Y689 179 aa14.96□□□□□ -0.01
CCDC88C-202ENST00000334448 SPTBN5Q9NRC6 3674 aaKnown RBP14.95□□□□□ -0.02
CCDC88C-202ENST00000334448 PRPF4O43172 522 aaKnown RBP eCLIP14.95□□□□□ -0.02
CCDC88C-202ENST00000334448 PRNPP04156 253 aa14.95□□□□□ -0.02
CCDC88C-202ENST00000334448 UGT2B4P06133 528 aa14.95□□□□□ -0.02
CCDC88C-202ENST00000334448 C7P10643 843 aa14.95□□□□□ -0.02
CCDC88C-202ENST00000334448 KRT15P19012 456 aa14.95□□□□□ -0.02
CCDC88C-202ENST00000334448 OGNP20774 298 aaKnown RBP14.95□□□□□ -0.02
CCDC88C-202ENST00000334448 NFKBIAP25963 317 aa14.95□□□□□ -0.02
CCDC88C-202ENST00000334448 SLC8A1P32418 973 aa14.95□□□□□ -0.02
CCDC88C-202ENST00000334448 SPRP35270 261 aaPredicted RBP14.95□□□□□ -0.02
CCDC88C-202ENST00000334448 HADHAP40939 763 aa14.95□□□□□ -0.02
CCDC88C-202ENST00000334448 CCNFP41002 786 aa14.95□□□□□ -0.02
CCDC88C-202ENST00000334448 MAGEA12P43365 314 aa14.95□□□□□ -0.02
CCDC88C-202ENST00000334448 POLD2P49005 469 aa14.95□□□□□ -0.02
CCDC88C-202ENST00000334448 SUOXP51687 545 aa14.95□□□□□ -0.02
CCDC88C-202ENST00000334448 PTPN5P54829 565 aa14.95□□□□□ -0.02
CCDC88C-202ENST00000334448 SLC18A2Q05940 514 aa14.95□□□□□ -0.02
CCDC88C-202ENST00000334448 THOC5Q13769 683 aaKnown RBP14.95□□□□□ -0.02
CCDC88C-202ENST00000334448 FNDC3BQ53EP0 1204 aaKnown RBP14.95□□□□□ -0.02
CCDC88C-202ENST00000334448 AFTPHQ6ULP2 937 aa14.95□□□□□ -0.02
CCDC88C-202ENST00000334448 TPRG1Q6ZUI0 275 aa14.95□□□□□ -0.02
CCDC88C-202ENST00000334448 RAVER1Q8IY67 606 aaKnown RBP14.95□□□□□ -0.02
CCDC88C-202ENST00000334448 CBARPQ8N350 705 aaPredicted RBP14.95□□□□□ -0.02
CCDC88C-202ENST00000334448 SLC44A3Q8N4M1 653 aa14.95□□□□□ -0.02
CCDC88C-202ENST00000334448 ACMSDQ8TDX5 336 aa14.95□□□□□ -0.02
CCDC88C-202ENST00000334448 PDCD6IPQ8WUM4 868 aaKnown RBP14.95□□□□□ -0.02
CCDC88C-202ENST00000334448 CDKN2AIPNLQ96HQ2 116 aa14.95□□□□□ -0.02
CCDC88C-202ENST00000334448 AGAP2Q99490 1192 aa14.95□□□□□ -0.02
CCDC88C-202ENST00000334448 RHOJQ9H4E5 214 aa14.95□□□□□ -0.02
CCDC88C-202ENST00000334448 IARS2Q9NSE4 1012 aaKnown RBP14.95□□□□□ -0.02
CCDC88C-202ENST00000334448 TXNDC16Q9P2K2 825 aa14.95□□□□□ -0.02
CCDC88C-202ENST00000334448 SMG5Q9UPR3 1016 aaKnown RBP14.95□□□□□ -0.02
CCDC88C-202ENST00000334448 KCTD3Q9Y597 815 aa14.95□□□□□ -0.02
CCDC88C-202ENST00000334448 MIA3Q5JRA6 1907 aa14.95□□□□□ -0.02
CCDC88C-202ENST00000334448 TRIM49D1C9J1S8 452 aa14.94□□□□□ -0.02
CCDC88C-202ENST00000334448 SPECC1L-ADORA2AF8WAN1 911 aa14.94□□□□□ -0.02
CCDC88C-202ENST00000334448 AURKAO14965 403 aa14.94□□□□□ -0.02
CCDC88C-202ENST00000334448 LEFTY1O75610 366 aa14.94□□□□□ -0.02
CCDC88C-202ENST00000334448 CTSLP07711 333 aa14.94□□□□□ -0.02
CCDC88C-202ENST00000334448 ITGA2BP08514 1039 aa14.94□□□□□ -0.02
CCDC88C-202ENST00000334448 PIRTP0C851 137 aa14.94□□□□□ -0.02
CCDC88C-202ENST00000334448 HNF1BP35680 557 aa14.94□□□□□ -0.02
CCDC88C-202ENST00000334448 KIR2DL1P43626 348 aaPredicted RBP14.94□□□□□ -0.02
CCDC88C-202ENST00000334448 LEPRP48357 1165 aaKnown RBP14.94□□□□□ -0.02
CCDC88C-202ENST00000334448 CSRP3P50461 194 aa14.94□□□□□ -0.02
CCDC88C-202ENST00000334448 PRAMEP78395 509 aa14.94□□□□□ -0.02
CCDC88C-202ENST00000334448 PFKPQ01813 784 aa14.94□□□□□ -0.02
CCDC88C-202ENST00000334448 TYSND1Q2T9J0 566 aa14.94□□□□□ -0.02
CCDC88C-202ENST00000334448 ZNF805Q5CZA5 627 aa14.94□□□□□ -0.02
CCDC88C-202ENST00000334448 SERPINA13PQ6UXR4 307 aa14.94□□□□□ -0.02
CCDC88C-202ENST00000334448 ZC3HC1Q86WB0 502 aaKnown RBP14.94□□□□□ -0.02
CCDC88C-202ENST00000334448 SFTPA1Q8IWL2 248 aa14.94□□□□□ -0.02
CCDC88C-202ENST00000334448 OR13C4Q8NGS5 318 aa14.94□□□□□ -0.02
CCDC88C-202ENST00000334448 OR8D1Q8WZ84 308 aa14.94□□□□□ -0.02
CCDC88C-202ENST00000334448 HDAC10Q969S8 669 aa14.94□□□□□ -0.02
CCDC88C-202ENST00000334448 TBATAQ96M53 351 aa14.94□□□□□ -0.02
CCDC88C-202ENST00000334448 GPR22Q99680 433 aa14.94□□□□□ -0.02
CCDC88C-202ENST00000334448 SLC2A4RGQ9NR83 387 aa14.94□□□□□ -0.02
CCDC88C-202ENST00000334448 POLR3BQ9NW08 1133 aaPredicted RBP14.94□□□□□ -0.02
CCDC88C-202ENST00000334448 IL1RAPL1Q9NZN1 696 aa14.94□□□□□ -0.02
CCDC88C-202ENST00000334448 SLC17A6Q9P2U8 582 aa14.94□□□□□ -0.02
CCDC88C-202ENST00000334448 NFKBIL1Q9UBC1 381 aaPredicted RBP14.94□□□□□ -0.02
CCDC88C-202ENST00000334448 SUN2Q9UH99 717 aa14.94□□□□□ -0.02
CCDC88C-202ENST00000334448 FBXO5Q9UKT4 447 aa14.94□□□□□ -0.02
CCDC88C-202ENST00000334448 PPM1HQ9ULR3 514 aa14.94□□□□□ -0.02
CCDC88C-202ENST00000334448 FAM50BQ9Y247 325 aa14.94□□□□□ -0.02
CCDC88C-202ENST00000334448 MYLKQ15746 1914 aa14.94□□□□□ -0.02
CCDC88C-202ENST00000334448 CCDC162PA2VCL2 907 aa14.93□□□□□ -0.02
CCDC88C-202ENST00000334448 A6NNZ2 444 aa14.93□□□□□ -0.02
CCDC88C-202ENST00000334448 UPK3BL1B0FP48 263 aa14.93□□□□□ -0.02
CCDC88C-202ENST00000334448 UPK3BL2E5RIL1 263 aa14.93□□□□□ -0.02
CCDC88C-202ENST00000334448 STX7O15400 261 aaKnown RBP14.93□□□□□ -0.02
CCDC88C-202ENST00000334448 TYROBPO43914 113 aa14.93□□□□□ -0.02
CCDC88C-202ENST00000334448 RFPL1O75677 317 aa14.93□□□□□ -0.02
CCDC88C-202ENST00000334448 MT-ND3P03897 115 aa14.93□□□□□ -0.02
CCDC88C-202ENST00000334448 ZNF30P17039 623 aa14.93□□□□□ -0.02
CCDC88C-202ENST00000334448 ITGB7P26010 798 aa14.93□□□□□ -0.02
CCDC88C-202ENST00000334448 GABRB3P28472 473 aa14.93□□□□□ -0.02
CCDC88C-202ENST00000334448 ABL2P42684 1182 aa14.93□□□□□ -0.02
CCDC88C-202ENST00000334448 IL12RB1P42701 662 aa14.93□□□□□ -0.02
CCDC88C-202ENST00000334448 SLC1A2P43004 574 aa14.93□□□□□ -0.02
CCDC88C-202ENST00000334448 GALK1P51570 392 aa14.93□□□□□ -0.02
CCDC88C-202ENST00000334448 TUBB8Q3ZCM7 444 aa14.93□□□□□ -0.02
CCDC88C-202ENST00000334448 TMEM196Q5HYL7 178 aa14.93□□□□□ -0.02
CCDC88C-202ENST00000334448 EGFLAMQ63HQ2 1017 aa14.93□□□□□ -0.02
CCDC88C-202ENST00000334448 ZNF470Q6ECI4 717 aa14.93□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms