RNA–Protein interactions for RNA: ENST00000298281.8

PCF11-201, Transcript of PCF11, cleavage and polyadenylation factor subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PCF11, Length 7,677 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11-201ENST00000298281 RGS17Q9UGC6 210 aaPredicted RBP12.09□□□□□ -0.47
PCF11-201ENST00000298281 APOC4-APOC2K7ER74 178 aa12.09□□□□□ -0.47
PCF11-201ENST00000298281 APOC2P02655 101 aa12.09□□□□□ -0.47
PCF11-201ENST00000298281 IL12AP29459 219 aa12.09□□□□□ -0.47
PCF11-201ENST00000298281 RAP1GAPP47736 663 aa12.09□□□□□ -0.47
PCF11-201ENST00000298281 SPIN3Q5JUX0 258 aa12.09□□□□□ -0.47
PCF11-201ENST00000298281 KBTBD2Q8IY47 623 aa12.09□□□□□ -0.47
PCF11-201ENST00000298281 BORCS8Q96FH0 119 aa12.09□□□□□ -0.47
PCF11-201ENST00000298281 KIAA1683Q9H0B3 1180 aa12.09□□□□□ -0.47
PCF11-201ENST00000298281 SEMA6BQ9H3T3 888 aa12.09□□□□□ -0.47
PCF11-201ENST00000298281 SNTG2Q9NY99 539 aa12.09□□□□□ -0.47
PCF11-201ENST00000298281 SSR3Q9UNL2 185 aa12.09□□□□□ -0.47
PCF11-201ENST00000298281 TBC1D30Q9Y2I9 924 aa12.09□□□□□ -0.47
PCF11-201ENST00000298281 DLC1Q96QB1 1528 aa12.09□□□□□ -0.47
PCF11-201ENST00000298281 OR14I1A6ND48 311 aa12.09□□□□□ -0.47
PCF11-201ENST00000298281 UBOX5O94941 541 aa12.09□□□□□ -0.47
PCF11-201ENST00000298281 FAM153BP0C7A2 387 aa12.09□□□□□ -0.47
PCF11-201ENST00000298281 SLC6A3Q01959 620 aa12.09□□□□□ -0.47
PCF11-201ENST00000298281 LRP8Q14114 963 aa12.09□□□□□ -0.47
PCF11-201ENST00000298281 SLC30A6Q6NXT4 461 aa12.09□□□□□ -0.47
PCF11-201ENST00000298281 SRFBP1Q8NEF9 429 aaKnown RBP12.09□□□□□ -0.47
PCF11-201ENST00000298281 OR6Y1Q8NGX8 325 aa12.09□□□□□ -0.47
PCF11-201ENST00000298281 SCAF8Q9UPN6 1271 aaKnown RBP12.09□□□□□ -0.47
PCF11-201ENST00000298281 ARHGEF33A8MVX0 844 aa12.09□□□□□ -0.47
PCF11-201ENST00000298281 YBX3P16989 372 aaKnown RBP eCLIP12.09□□□□□ -0.47
PCF11-201ENST00000298281 ZNF16P17020 682 aaPredicted RBP12.09□□□□□ -0.47
PCF11-201ENST00000298281 RGS19P49795 217 aa12.09□□□□□ -0.47
PCF11-201ENST00000298281 UBE2R2Q712K3 238 aaPredicted RBP12.09□□□□□ -0.47
PCF11-201ENST00000298281 ARHGEF19Q8IW93 802 aa12.09□□□□□ -0.47
PCF11-201ENST00000298281 HDDC3Q8N4P3 179 aa12.09□□□□□ -0.47
PCF11-201ENST00000298281 OR7D4Q8NG98 312 aa12.09□□□□□ -0.47
PCF11-201ENST00000298281 ZYG11BQ9C0D3 744 aa12.09□□□□□ -0.47
PCF11-201ENST00000298281 ZNF350Q9GZX5 532 aa12.09□□□□□ -0.47
PCF11-201ENST00000298281 EHD1Q9H4M9 534 aa12.09□□□□□ -0.47
PCF11-201ENST00000298281 PCDHGC5Q9Y5F6 944 aa12.09□□□□□ -0.47
PCF11-201ENST00000298281 BTN3A1O00481 513 aa12.09□□□□□ -0.47
PCF11-201ENST00000298281 ITGA2P17301 1181 aa12.09□□□□□ -0.47
PCF11-201ENST00000298281 FMO4P31512 558 aa12.09□□□□□ -0.47
PCF11-201ENST00000298281 TSPAN5P62079 268 aa12.09□□□□□ -0.47
PCF11-201ENST00000298281 VASH1Q7L8A9 365 aaPredicted RBP12.09□□□□□ -0.47
PCF11-201ENST00000298281 METTL8Q9H825 291 aaKnown RBP12.09□□□□□ -0.47
PCF11-201ENST00000298281 MARCH7Q9H992 704 aa12.09□□□□□ -0.47
PCF11-201ENST00000298281 HIF3AQ9Y2N7 669 aa12.09□□□□□ -0.47
PCF11-201ENST00000298281 SEPT4O43236 478 aa12.09□□□□□ -0.47
PCF11-201ENST00000298281 GABBR2O75899 941 aa12.09□□□□□ -0.47
PCF11-201ENST00000298281 VIL1P09327 827 aaKnown RBP12.09□□□□□ -0.47
PCF11-201ENST00000298281 IL12BP29460 328 aa12.09□□□□□ -0.47
PCF11-201ENST00000298281 USP46P62068 366 aa12.09□□□□□ -0.47
PCF11-201ENST00000298281 PARP6Q2NL67 630 aa12.09□□□□□ -0.47
PCF11-201ENST00000298281 KCTD21Q4G0X4 260 aa12.09□□□□□ -0.47
PCF11-201ENST00000298281 TTC27Q6P3X3 843 aa12.09□□□□□ -0.47
PCF11-201ENST00000298281 TNFAIP8L1Q8WVP5 186 aa12.09□□□□□ -0.47
PCF11-201ENST00000298281 OXNAD1Q96HP4 312 aaPredicted RBP12.09□□□□□ -0.47
PCF11-201ENST00000298281 OSGEPQ9NPF4 335 aa12.09□□□□□ -0.47
PCF11-201ENST00000298281 COPS7AQ9UBW8 275 aa12.09□□□□□ -0.47
PCF11-201ENST00000298281 CAMSAP1Q5T5Y3 1602 aa12.08□□□□□ -0.47
PCF11-201ENST00000298281 TRAV19A0A0A6YYK7 116 aa12.08□□□□□ -0.48
PCF11-201ENST00000298281 CABYRO75952 493 aa12.08□□□□□ -0.48
PCF11-201ENST00000298281 MICAL2O94851 1124 aa12.08□□□□□ -0.48
PCF11-201ENST00000298281 VAPBO95292 243 aa12.08□□□□□ -0.48
PCF11-201ENST00000298281 SCGB1D2O95969 90 aa12.08□□□□□ -0.48
PCF11-201ENST00000298281 ALADP13716 330 aa12.08□□□□□ -0.48
PCF11-201ENST00000298281 CHMP24386 653 aa12.08□□□□□ -0.48
PCF11-201ENST00000298281 SNRPD1P62314 119 aaKnown RBP12.08□□□□□ -0.48
PCF11-201ENST00000298281 SPIBQ01892 262 aa12.08□□□□□ -0.48
PCF11-201ENST00000298281 RASGEF1BQ0VAM2 473 aa12.08□□□□□ -0.48
PCF11-201ENST00000298281 CROCCP3Q8IVE0 287 aa12.08□□□□□ -0.48
PCF11-201ENST00000298281 PARP8Q8N3A8 854 aa12.08□□□□□ -0.48
PCF11-201ENST00000298281 ZSCAN1Q8NBB4 408 aa12.08□□□□□ -0.48
PCF11-201ENST00000298281 PRMT6Q96LA8 375 aaPredicted RBP12.08□□□□□ -0.48
PCF11-201ENST00000298281 FCRL4Q96PJ5 515 aa12.08□□□□□ -0.48
PCF11-201ENST00000298281 FNDC11Q9BVV2 318 aa12.08□□□□□ -0.48
PCF11-201ENST00000298281 TDRD1Q9BXT4 1180 aaKnown RBP12.08□□□□□ -0.48
PCF11-201ENST00000298281 C1orf167Q5SNV9 1468 aa12.08□□□□□ -0.48
PCF11-201ENST00000298281 IL18Q14116 193 aa12.08□□□□□ -0.48
PCF11-201ENST00000298281 CRY1Q16526 586 aa12.08□□□□□ -0.48
PCF11-201ENST00000298281 CXorf57Q6NSI4 855 aaKnown RBP12.08□□□□□ -0.48
PCF11-201ENST00000298281 ZCCHC12Q6PEW1 402 aa12.08□□□□□ -0.48
PCF11-201ENST00000298281 ZNF567Q8N184 647 aa12.08□□□□□ -0.48
PCF11-201ENST00000298281 TCP10LQ8TDR4 215 aa12.08□□□□□ -0.48
PCF11-201ENST00000298281 ERVK-18Q9QC07 812 aa12.08□□□□□ -0.48
PCF11-201ENST00000298281 PCDHGA6Q9Y5G7 932 aa12.08□□□□□ -0.48
PCF11-201ENST00000298281 MSCO60682 206 aa12.08□□□□□ -0.48
PCF11-201ENST00000298281 MLYCDO95822 493 aa12.08□□□□□ -0.48
PCF11-201ENST00000298281 SEMA3AQ14563 771 aa12.08□□□□□ -0.48
PCF11-201ENST00000298281 SF1Q15637 639 aaKnown RBP12.08□□□□□ -0.48
PCF11-201ENST00000298281 C5orf22Q49AR2 442 aa12.08□□□□□ -0.48
PCF11-201ENST00000298281 CDKAL1Q5VV42 579 aa12.08□□□□□ -0.48
PCF11-201ENST00000298281 TRIM40Q6P9F5 258 aa12.08□□□□□ -0.48
PCF11-201ENST00000298281 EDEM1Q92611 657 aa12.08□□□□□ -0.48
PCF11-201ENST00000298281 POP1Q99575 1024 aaKnown RBP12.08□□□□□ -0.48
PCF11-201ENST00000298281 C1orf50Q9BV19 199 aa12.08□□□□□ -0.48
PCF11-201ENST00000298281 DDX18Q9NVP1 670 aaKnown RBP12.08□□□□□ -0.48
PCF11-201ENST00000298281 KCNK4Q9NYG8 393 aa12.08□□□□□ -0.48
PCF11-201ENST00000298281 SAGP10523 405 aaPredicted RBP12.08□□□□□ -0.48
PCF11-201ENST00000298281 HERVK_113P62684 666 aa12.08□□□□□ -0.48
PCF11-201ENST00000298281 FIP1L1Q6UN15 594 aaKnown RBP12.08□□□□□ -0.48
PCF11-201ENST00000298281 ARMCX6Q7L4S7 300 aa12.08□□□□□ -0.48
PCF11-201ENST00000298281 LIX1Q8N485 282 aa12.08□□□□□ -0.48
PCF11-201ENST00000298281 CRNNQ9UBG3 495 aaPredicted RBP12.08□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms