RNA–Protein interactions for RNA: ENSMUST00000054384.5

Trim56-201, Transcript of E3 ubiquitin-protein ligase TRIM56, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Trim56, Length 9,279 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56-201ENSMUST00000054384 Plod3Q9R0E1 741 aa11.98□□□□□ -0.49
Trim56-201ENSMUST00000054384 Creb3l1Q9Z125 519 aa11.98□□□□□ -0.49
Trim56-201ENSMUST00000054384 4930407I10RikD3Z5T8 1512 aa11.98□□□□□ -0.49
Trim56-201ENSMUST00000054384 Zfyve16Q80U44 1528 aa11.98□□□□□ -0.49
Trim56-201ENSMUST00000054384 Gm45233A0A0N4SVE0 221 aa11.97□□□□□ -0.49
Trim56-201ENSMUST00000054384 Olfr1200A2ATJ4 336 aa11.97□□□□□ -0.49
Trim56-201ENSMUST00000054384 Hoxc6P10629 235 aa11.97□□□□□ -0.49
Trim56-201ENSMUST00000054384 Slc2a6Q3UDF0 497 aa11.97□□□□□ -0.49
Trim56-201ENSMUST00000054384 Thoc7Q7TMY4 204 aaKnown RBP11.97□□□□□ -0.49
Trim56-201ENSMUST00000054384 Ppm1mQ8BU27 406 aa11.97□□□□□ -0.49
Trim56-201ENSMUST00000054384 Gulp1Q8K2A1 304 aa11.97□□□□□ -0.49
Trim56-201ENSMUST00000054384 Coq6Q8R1S0 476 aa11.97□□□□□ -0.49
Trim56-201ENSMUST00000054384 Mcoln3Q8R4F0 553 aa11.97□□□□□ -0.49
Trim56-201ENSMUST00000054384 Trim2Q9ESN6 744 aaKnown RBP11.97□□□□□ -0.49
Trim56-201ENSMUST00000054384 EefsecQ9JHW4 583 aa11.97□□□□□ -0.49
Trim56-201ENSMUST00000054384 Htra1Q9R118 480 aa11.97□□□□□ -0.49
Trim56-201ENSMUST00000054384 Adam18Q9R157 719 aa11.97□□□□□ -0.49
Trim56-201ENSMUST00000054384 Cps1Q8C196 1500 aa11.97□□□□□ -0.49
Trim56-201ENSMUST00000054384 NinQ61043 2035 aa11.97□□□□□ -0.49
Trim56-201ENSMUST00000054384 Hs3st1O35310 311 aa11.97□□□□□ -0.49
Trim56-201ENSMUST00000054384 Ppp2r2bQ6ZWR4 443 aa11.97□□□□□ -0.49
Trim56-201ENSMUST00000054384 Tmem138Q9D6G5 162 aa11.97□□□□□ -0.49
Trim56-201ENSMUST00000054384 GnmtQ9QXF8 293 aa11.97□□□□□ -0.49
Trim56-201ENSMUST00000054384 Gm8374L7N2A9 172 aa11.97□□□□□ -0.49
Trim56-201ENSMUST00000054384 Csf1rP09581 977 aa11.97□□□□□ -0.49
Trim56-201ENSMUST00000054384 Ppp4cP97470 307 aa11.97□□□□□ -0.49
Trim56-201ENSMUST00000054384 Alg11Q3TZM9 492 aa11.97□□□□□ -0.49
Trim56-201ENSMUST00000054384 Mylk4Q5SUV5 386 aa11.97□□□□□ -0.49
Trim56-201ENSMUST00000054384 Olfr792Q7TRH9 311 aa11.97□□□□□ -0.49
Trim56-201ENSMUST00000054384 Znf436Q8BPP0 452 aa11.97□□□□□ -0.49
Trim56-201ENSMUST00000054384 Depdc1aQ8CIG0 804 aa11.97□□□□□ -0.49
Trim56-201ENSMUST00000054384 Akr1c13Q8VC28 323 aa11.97□□□□□ -0.49
Trim56-201ENSMUST00000054384 Sntg2Q925E0 539 aa11.97□□□□□ -0.49
Trim56-201ENSMUST00000054384 Prpf19Q99KP6 504 aaKnown RBP11.97□□□□□ -0.49
Trim56-201ENSMUST00000054384 Gm5737A0A140LI11 423 aa11.97□□□□□ -0.49
Trim56-201ENSMUST00000054384 Znf512Q69Z99 562 aa11.97□□□□□ -0.49
Trim56-201ENSMUST00000054384 Sat2Q6P8J2 170 aa11.97□□□□□ -0.49
Trim56-201ENSMUST00000054384 Slc25a36Q922G0 311 aa11.97□□□□□ -0.49
Trim56-201ENSMUST00000054384 Ifi44lQ9BDB7 447 aa11.97□□□□□ -0.49
Trim56-201ENSMUST00000054384 Cst11Q9D269 139 aa11.97□□□□□ -0.49
Trim56-201ENSMUST00000054384 Kctd17E0CYQ0 296 aa11.97□□□□□ -0.49
Trim56-201ENSMUST00000054384 KlO35082 1014 aa11.97□□□□□ -0.49
Trim56-201ENSMUST00000054384 Gstm5P48774 224 aa11.97□□□□□ -0.49
Trim56-201ENSMUST00000054384 Pdcd5P56812 126 aa11.97□□□□□ -0.49
Trim56-201ENSMUST00000054384 ChatQ03059 641 aa11.97□□□□□ -0.49
Trim56-201ENSMUST00000054384 Sf1Q64213 653 aaKnown RBP11.97□□□□□ -0.49
Trim56-201ENSMUST00000054384 Trmt6Q8CE96 497 aa11.97□□□□□ -0.49
Trim56-201ENSMUST00000054384 Crispld1Q8CGD2 500 aa11.97□□□□□ -0.49
Trim56-201ENSMUST00000054384 TbceQ8CIV8 524 aa11.97□□□□□ -0.49
Trim56-201ENSMUST00000054384 Gm42417Q8K1D0 126 aa11.97□□□□□ -0.49
Trim56-201ENSMUST00000054384 Dcaf8Q8N7N5 591 aa11.97□□□□□ -0.49
Trim56-201ENSMUST00000054384 Mark1Q8VHJ5 795 aa11.97□□□□□ -0.49
Trim56-201ENSMUST00000054384 Senp2Q91ZX6 588 aa11.97□□□□□ -0.49
Trim56-201ENSMUST00000054384 Serpinb7Q9D695 380 aa11.97□□□□□ -0.49
Trim56-201ENSMUST00000054384 Ybx3Q9JKB3 361 aaKnown RBP11.97□□□□□ -0.49
Trim56-201ENSMUST00000054384 Fndc1E9Q043 1732 aa11.97□□□□□ -0.49
Trim56-201ENSMUST00000054384 Zfp563B8JJZ9 448 aa11.97□□□□□ -0.49
Trim56-201ENSMUST00000054384 Slc2a2P14246 523 aa11.97□□□□□ -0.49
Trim56-201ENSMUST00000054384 SgcgP82348 291 aa11.97□□□□□ -0.49
Trim56-201ENSMUST00000054384 Neurl1bQ0MW30 546 aa11.97□□□□□ -0.49
Trim56-201ENSMUST00000054384 Ankdd1bQ14DN9 521 aa11.97□□□□□ -0.49
Trim56-201ENSMUST00000054384 Abcd2Q61285 741 aa11.97□□□□□ -0.49
Trim56-201ENSMUST00000054384 Rbm4Q8C7Q4 361 aaKnown RBP11.97□□□□□ -0.49
Trim56-201ENSMUST00000054384 Rbm4bQ8VE92 357 aaKnown RBP11.97□□□□□ -0.49
Trim56-201ENSMUST00000054384 D6Wsu163eQ91YN0 552 aa11.97□□□□□ -0.49
Trim56-201ENSMUST00000054384 Yipf2Q99LP8 312 aa11.97□□□□□ -0.49
Trim56-201ENSMUST00000054384 Efhc1Q9D9T8 648 aa11.97□□□□□ -0.49
Trim56-201ENSMUST00000054384 Mrgpra2aA0A0R4J1Z0 331 aa11.97□□□□□ -0.49
Trim56-201ENSMUST00000054384 Gm5751A2AHC8 147 aa11.97□□□□□ -0.49
Trim56-201ENSMUST00000054384 Zfp945E9PYM8 794 aa11.97□□□□□ -0.49
Trim56-201ENSMUST00000054384 Zc3h12bG3X9I7 835 aa11.97□□□□□ -0.49
Trim56-201ENSMUST00000054384 ThrbP37242 461 aa11.97□□□□□ -0.49
Trim56-201ENSMUST00000054384 Mrps7Q80X85 242 aaKnown RBP11.97□□□□□ -0.49
Trim56-201ENSMUST00000054384 Olfml2aQ8BHP7 681 aa11.97□□□□□ -0.49
Trim56-201ENSMUST00000054384 Exoc3l1Q8BI71 739 aa11.97□□□□□ -0.49
Trim56-201ENSMUST00000054384 Rap2cQ8BU31 183 aa11.97□□□□□ -0.49
Trim56-201ENSMUST00000054384 Dmtf1Q8CE22 761 aa11.97□□□□□ -0.49
Trim56-201ENSMUST00000054384 Cd300ldQ8VCH2 221 aa11.97□□□□□ -0.49
Trim56-201ENSMUST00000054384 Mto1Q923Z3 669 aa11.97□□□□□ -0.49
Trim56-201ENSMUST00000054384 Actr3Q99JY9 418 aaKnown RBP11.97□□□□□ -0.49
Trim56-201ENSMUST00000054384 Rundc3aO08576 446 aa11.97□□□□□ -0.49
Trim56-201ENSMUST00000054384 TpmtO55060 240 aa11.97□□□□□ -0.49
Trim56-201ENSMUST00000054384 NkaplQ5SZT7 395 aa11.97□□□□□ -0.49
Trim56-201ENSMUST00000054384 Atp13a3Q5XF89 1219 aa11.97□□□□□ -0.49
Trim56-201ENSMUST00000054384 MaddQ80U28 1577 aa11.97□□□□□ -0.49
Trim56-201ENSMUST00000054384 Camk2gQ923T9 529 aa11.97□□□□□ -0.49
Trim56-201ENSMUST00000054384 Slit1Q80TR4 1531 aa11.96□□□□□ -0.49
Trim56-201ENSMUST00000054384 Vmn2r50E9PW61 861 aa11.96□□□□□ -0.49
Trim56-201ENSMUST00000054384 Ctbp1O88712 441 aa11.96□□□□□ -0.49
Trim56-201ENSMUST00000054384 Klrb1Q0ZUP1 214 aa11.96□□□□□ -0.49
Trim56-201ENSMUST00000054384 Tmem109Q3UBX0 243 aa11.96□□□□□ -0.49
Trim56-201ENSMUST00000054384 BtrcQ3ULA2 605 aaKnown RBP11.96□□□□□ -0.49
Trim56-201ENSMUST00000054384 N4bp1Q6A037 893 aa11.96□□□□□ -0.49
Trim56-201ENSMUST00000054384 Mon1aQ6PDG8 556 aa11.96□□□□□ -0.49
Trim56-201ENSMUST00000054384 Scgb2b2Q6UGQ3 114 aa11.96□□□□□ -0.49
Trim56-201ENSMUST00000054384 Kcnt1Q6ZPR4 1224 aa11.96□□□□□ -0.49
Trim56-201ENSMUST00000054384 Glra2Q7TNC8 452 aa11.96□□□□□ -0.49
Trim56-201ENSMUST00000054384 KyQ8C8H8 661 aa11.96□□□□□ -0.49
Trim56-201ENSMUST00000054384 Cyp4f3Q99N16 524 aa11.96□□□□□ -0.49
Trim56-201ENSMUST00000054384 Ptpn12P35831 775 aa11.96□□□□□ -0.49
Retrieved 100 of 22,080 RNA–protein pairs in 67.7 ms