RNA–Protein interactions for RNA: ENST00000557477.1

PRPF39-212, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 5

Gene PRPF39, Length 724 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-212ENST00000557477 TMC8Q8IU68 726 aa4.84□□□□□ -1.63
PRPF39-212ENST00000557477 SUGP2Q8IX01 1082 aaKnown RBP eCLIP4.84□□□□□ -1.632e-6■■■□□ 14.7
PRPF39-212ENST00000557477 ZDHHC23Q8IYP9 409 aa4.84□□□□□ -1.63
PRPF39-212ENST00000557477 TTC39CQ8N584 583 aa4.84□□□□□ -1.63
PRPF39-212ENST00000557477 WDTC1Q8N5D0 677 aa4.84□□□□□ -1.63
PRPF39-212ENST00000557477 PSPC1Q8WXF1 523 aaKnown RBP4.84□□□□□ -1.63
PRPF39-212ENST00000557477 GTF3C6Q969F1 213 aa4.84□□□□□ -1.63
PRPF39-212ENST00000557477 NEUROD6Q96NK8 337 aa4.84□□□□□ -1.63
PRPF39-212ENST00000557477 CRAMP1Q96RY5 1269 aa4.84□□□□□ -1.63
PRPF39-212ENST00000557477 H2AFJQ9BTM1 129 aa4.84□□□□□ -1.63
PRPF39-212ENST00000557477 PLEKHA4Q9H4M7 779 aa4.84□□□□□ -1.63
PRPF39-212ENST00000557477 SLC6A13Q9NSD5 602 aa4.84□□□□□ -1.63
PRPF39-212ENST00000557477 SPATS2LQ9NUQ6 558 aaKnown RBP4.84□□□□□ -1.63
PRPF39-212ENST00000557477 ZNF70Q9UC06 446 aaPredicted RBP4.84□□□□□ -1.63
PRPF39-212ENST00000557477 VPS28Q9UK41 221 aa4.84□□□□□ -1.63
PRPF39-212ENST00000557477 SLC4A4Q9Y6R1 1079 aa4.84□□□□□ -1.63
PRPF39-212ENST00000557477 KIF15Q9NS87 1388 aa4.83□□□□□ -1.64
PRPF39-212ENST00000557477 TMEM2Q9UHN6 1383 aa4.83□□□□□ -1.64
PRPF39-212ENST00000557477 TYW5A2RUC4 315 aaKnown RBP4.83□□□□□ -1.64
PRPF39-212ENST00000557477 LRRC53A6NM62 1247 aa4.83□□□□□ -1.64
PRPF39-212ENST00000557477 KLRF2D3W0D1 207 aa4.83□□□□□ -1.64
PRPF39-212ENST00000557477 AHCYL1O43865 530 aa4.83□□□□□ -1.64
PRPF39-212ENST00000557477 KIF1CO43896 1103 aaKnown RBP4.83□□□□□ -1.64
PRPF39-212ENST00000557477 ATP2C2O75185 946 aa4.83□□□□□ -1.64
PRPF39-212ENST00000557477 PPFIA2O75334 1257 aa4.83□□□□□ -1.64
PRPF39-212ENST00000557477 TFP02787 698 aa4.83□□□□□ -1.64
PRPF39-212ENST00000557477 EIF2S1P05198 315 aaKnown RBP4.83□□□□□ -1.64
PRPF39-212ENST00000557477 RARGP13631 454 aa4.83□□□□□ -1.64
PRPF39-212ENST00000557477 SRD5A1P18405 259 aa4.83□□□□□ -1.64
PRPF39-212ENST00000557477 KELP23276 732 aa4.83□□□□□ -1.64
PRPF39-212ENST00000557477 PTGER1P34995 402 aa4.83□□□□□ -1.64
PRPF39-212ENST00000557477 FRG1Q14331 258 aaKnown RBP4.83□□□□□ -1.64
PRPF39-212ENST00000557477 FGFBP1Q14512 234 aa4.83□□□□□ -1.64
PRPF39-212ENST00000557477 INPP5JQ15735 1006 aaPredicted RBP4.83□□□□□ -1.64
PRPF39-212ENST00000557477 HIST2H2ACQ16777 129 aaPredicted RBP4.83□□□□□ -1.64
PRPF39-212ENST00000557477 COL28A1Q2UY09 1125 aa4.83□□□□□ -1.64
PRPF39-212ENST00000557477 C10orf25Q5T742 122 aa4.83□□□□□ -1.64
PRPF39-212ENST00000557477 MCPH1Q8NEM0 835 aa4.83□□□□□ -1.64
PRPF39-212ENST00000557477 GJC3Q8NFK1 279 aa4.83□□□□□ -1.64
PRPF39-212ENST00000557477 CEP76Q8TAP6 659 aa4.83□□□□□ -1.64
PRPF39-212ENST00000557477 SMARCE1Q969G3 411 aa4.83□□□□□ -1.64
PRPF39-212ENST00000557477 RNF183Q96D59 192 aa4.83□□□□□ -1.64
PRPF39-212ENST00000557477 RSRC1Q96IZ7 334 aaKnown RBP4.83□□□□□ -1.64
PRPF39-212ENST00000557477 CENPOQ9BU64 300 aa4.83□□□□□ -1.64
PRPF39-212ENST00000557477 STRA6Q9BX79 667 aa4.83□□□□□ -1.64
PRPF39-212ENST00000557477 FTOQ9C0B1 505 aaKnown RBP eCLIP4.83□□□□□ -1.64
PRPF39-212ENST00000557477 TKTL2Q9H0I9 626 aa4.83□□□□□ -1.64
PRPF39-212ENST00000557477 PRKRIP1Q9H875 184 aaPredicted RBP4.83□□□□□ -1.64
PRPF39-212ENST00000557477 FBRSL1Q9HCM7 1045 aaKnown RBP4.83□□□□□ -1.64
PRPF39-212ENST00000557477 RRP7BPQ9NSQ0 103 aa4.83□□□□□ -1.64
PRPF39-212ENST00000557477 HCFC1R1Q9NWW0 138 aa4.83□□□□□ -1.64
PRPF39-212ENST00000557477 PLK2Q9NYY3 685 aa4.83□□□□□ -1.64
PRPF39-212ENST00000557477 PCDHA12Q9UN75 941 aa4.83□□□□□ -1.64
PRPF39-212ENST00000557477 CARD8Q9Y2G2 431 aa4.83□□□□□ -1.64
PRPF39-212ENST00000557477 FAM96BQ9Y3D0 163 aa4.83□□□□□ -1.64
PRPF39-212ENST00000557477 SLIT1O75093 1534 aa4.82□□□□□ -1.64
PRPF39-212ENST00000557477 DUOX2Q9NRD8 1548 aa4.82□□□□□ -1.64
PRPF39-212ENST00000557477 ZMYM2Q9UBW7 1377 aa4.82□□□□□ -1.64
PRPF39-212ENST00000557477 A0A0U1RQF3 1178 aa4.82□□□□□ -1.64
PRPF39-212ENST00000557477 TTC36A6NLP5 189 aa4.82□□□□□ -1.64
PRPF39-212ENST00000557477 AGAP14A8MT82 685 aa4.82□□□□□ -1.64
PRPF39-212ENST00000557477 EIF3CLB5ME19 914 aaKnown RBP4.82□□□□□ -1.64
PRPF39-212ENST00000557477 STMND1H3BQB6 276 aa4.82□□□□□ -1.64
PRPF39-212ENST00000557477 KLK8O60259 260 aa4.82□□□□□ -1.64
PRPF39-212ENST00000557477 GJB3O75712 270 aa4.82□□□□□ -1.64
PRPF39-212ENST00000557477 IRF1P10914 325 aa4.82□□□□□ -1.64
PRPF39-212ENST00000557477 ITGAXP20702 1163 aa4.82□□□□□ -1.64
PRPF39-212ENST00000557477 DCTDP32321 178 aa4.82□□□□□ -1.64
PRPF39-212ENST00000557477 PPARGP37231 505 aaPredicted RBP4.82□□□□□ -1.64
PRPF39-212ENST00000557477 PIP4K2AP48426 406 aaPredicted RBP4.82□□□□□ -1.64
PRPF39-212ENST00000557477 PPP3CCP48454 512 aa4.82□□□□□ -1.64
PRPF39-212ENST00000557477 NANOS3P60323 173 aaKnown RBP4.82□□□□□ -1.64
PRPF39-212ENST00000557477 LAMB3Q13751 1172 aa4.82□□□□□ -1.64
PRPF39-212ENST00000557477 DPCR1Q3MIW9 517 aa4.82□□□□□ -1.64
PRPF39-212ENST00000557477 ESCO2Q56NI9 601 aa4.82□□□□□ -1.64
PRPF39-212ENST00000557477 NUGGCQ68CJ6 796 aa4.82□□□□□ -1.64
PRPF39-212ENST00000557477 ZNF626Q68DY1 528 aa4.82□□□□□ -1.64
PRPF39-212ENST00000557477 HIST2H2BCQ6DN03 193 aa4.82□□□□□ -1.64
PRPF39-212ENST00000557477 HIST2H2BDQ6DRA6 164 aa4.82□□□□□ -1.64
PRPF39-212ENST00000557477 CES5AQ6NT32 575 aa4.82□□□□□ -1.64
PRPF39-212ENST00000557477 TSSK4Q6SA08 328 aa4.82□□□□□ -1.64
PRPF39-212ENST00000557477 PRSS3P2Q8NHM4 247 aa4.82□□□□□ -1.64
PRPF39-212ENST00000557477 FAM149B1Q96BN6 582 aa4.82□□□□□ -1.64
PRPF39-212ENST00000557477 COQ8BQ96D53 544 aa4.82□□□□□ -1.64
PRPF39-212ENST00000557477 MMABQ96EY8 250 aaPredicted RBP4.82□□□□□ -1.64
PRPF39-212ENST00000557477 ZC3HAV1LQ96H79 300 aaKnown RBP4.82□□□□□ -1.64
PRPF39-212ENST00000557477 SIN3AQ96ST3 1273 aa4.82□□□□□ -1.64
PRPF39-212ENST00000557477 WDR77Q9BQA1 342 aaPredicted RBP4.82□□□□□ -1.64
PRPF39-212ENST00000557477 MXRA8Q9BRK3 442 aa4.82□□□□□ -1.64
PRPF39-212ENST00000557477 POLDIP3Q9BY77 421 aaKnown RBP4.82□□□□□ -1.64
PRPF39-212ENST00000557477 NPFFR1Q9GZQ6 430 aa4.82□□□□□ -1.64
PRPF39-212ENST00000557477 KLHL31Q9H511 634 aa4.82□□□□□ -1.64
PRPF39-212ENST00000557477 NSMCE4AQ9NXX6 385 aa4.82□□□□□ -1.64
PRPF39-212ENST00000557477 EHD2Q9NZN4 543 aa4.82□□□□□ -1.64
PRPF39-212ENST00000557477 ABI3Q9P2A4 366 aa4.82□□□□□ -1.64
PRPF39-212ENST00000557477 ADD3Q9UEY8 706 aaKnown RBP4.82□□□□□ -1.64
PRPF39-212ENST00000557477 HAO1Q9UJM8 370 aa4.82□□□□□ -1.64
PRPF39-212ENST00000557477 FRMD4BQ9Y2L6 1034 aa4.82□□□□□ -1.64
PRPF39-212ENST00000557477 LYVE1Q9Y5Y7 322 aa4.82□□□□□ -1.64
PRPF39-212ENST00000557477 ADGRB3O60242 1522 aa4.82□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms