RNA–Protein interactions for RNA: ENST00000541005.1

LTBR-208, Transcript of lymphotoxin beta receptor, humanhuman

TSL 2

Gene LTBR, Length 583 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LTBR-208ENST00000541005 PHTF1Q9UMS5 762 aa13.18□□□□□ -0.3
LTBR-208ENST00000541005 BTBD3Q9Y2F9 522 aa13.18□□□□□ -0.3
LTBR-208ENST00000541005 EFR3BQ9Y2G0 817 aa13.18□□□□□ -0.3
LTBR-208ENST00000541005 PPIL1Q9Y3C6 166 aa13.18□□□□□ -0.3
LTBR-208ENST00000541005 PCDHGC4Q9Y5F7 938 aa13.18□□□□□ -0.3
LTBR-208ENST00000541005 RP1P56715 2156 aa13.17□□□□□ -0.3
LTBR-208ENST00000541005 SPTY2D1-AS1A0A0U1RR47 76 aa13.17□□□□□ -0.3
LTBR-208ENST00000541005 KCNK1O00180 336 aa13.17□□□□□ -0.3
LTBR-208ENST00000541005 CST8O60676 142 aa13.17□□□□□ -0.3
LTBR-208ENST00000541005 PRKCGP05129 697 aa13.17□□□□□ -0.3
LTBR-208ENST00000541005 KRT10P13645 584 aa13.17□□□□□ -0.3
LTBR-208ENST00000541005 PECAM1P16284 738 aaPredicted RBP13.17□□□□□ -0.3
LTBR-208ENST00000541005 LIG3P49916 1009 aa13.17□□□□□ -0.3
LTBR-208ENST00000541005 RPL26P61254 145 aaKnown RBP13.17□□□□□ -0.3
LTBR-208ENST00000541005 YPEL5P62699 121 aa13.17□□□□□ -0.3
LTBR-208ENST00000541005 DYNLT1P63172 113 aa13.17□□□□□ -0.3
LTBR-208ENST00000541005 FAM193AP78312 1265 aa13.17□□□□□ -0.3
LTBR-208ENST00000541005 IL9RQ01113 521 aa13.17□□□□□ -0.3
LTBR-208ENST00000541005 DSC2Q02487 901 aa13.17□□□□□ -0.3
LTBR-208ENST00000541005 ZBTB17Q13105 803 aa13.17□□□□□ -0.3
LTBR-208ENST00000541005 IRF4Q15306 451 aa13.17□□□□□ -0.3
LTBR-208ENST00000541005 SLC14A2Q15849 920 aa13.17□□□□□ -0.3
LTBR-208ENST00000541005 WSCD2Q2TBF2 565 aa13.17□□□□□ -0.3
LTBR-208ENST00000541005 ARMC12Q5T9G4 340 aa13.17□□□□□ -0.3
LTBR-208ENST00000541005 NPNTQ6UXI9 565 aa13.17□□□□□ -0.3
LTBR-208ENST00000541005 LIPIQ6XZB0 460 aa13.17□□□□□ -0.3
LTBR-208ENST00000541005 BBS12Q6ZW61 710 aa13.17□□□□□ -0.3
LTBR-208ENST00000541005 NT5DC3Q86UY8 548 aa13.17□□□□□ -0.3
LTBR-208ENST00000541005 CNTD1Q8N815 330 aa13.17□□□□□ -0.3
LTBR-208ENST00000541005 SETD7Q8WTS6 366 aaKnown RBP13.17□□□□□ -0.3
LTBR-208ENST00000541005 PIH1D2Q8WWB5 315 aa13.17□□□□□ -0.3
LTBR-208ENST00000541005 CDC6Q99741 560 aa13.17□□□□□ -0.3
LTBR-208ENST00000541005 TDRD1Q9BXT4 1180 aaKnown RBP13.17□□□□□ -0.3
LTBR-208ENST00000541005 RPL26L1Q9UNX3 145 aaKnown RBP13.17□□□□□ -0.3
LTBR-208ENST00000541005 PCDHB9Q9Y5E1 797 aa13.17□□□□□ -0.3
LTBR-208ENST00000541005 RAI2Q9Y5P3 530 aa13.17□□□□□ -0.3
LTBR-208ENST00000541005 MAP1BP46821 2468 aaKnown RBP13.17□□□□□ -0.3
LTBR-208ENST00000541005 ZNF106Q9H2Y7 1883 aaKnown RBP13.16□□□□□ -0.3
LTBR-208ENST00000541005 SPAARA0A1B0GVQ0 90 aa13.16□□□□□ -0.3
LTBR-208ENST00000541005 PSMD11O00231 422 aa13.16□□□□□ -0.3
LTBR-208ENST00000541005 ARHGAP6O43182 974 aa13.16□□□□□ -0.3
LTBR-208ENST00000541005 HEXIM1O94992 359 aaKnown RBP13.16□□□□□ -0.3
LTBR-208ENST00000541005 JCHAINP01591 159 aa13.16□□□□□ -0.3
LTBR-208ENST00000541005 ELFN1P0C7U0 828 aa13.16□□□□□ -0.3
LTBR-208ENST00000541005 NME1P15531 152 aaKnown RBP13.16□□□□□ -0.3
LTBR-208ENST00000541005 GM2AP17900 193 aa13.16□□□□□ -0.3
LTBR-208ENST00000541005 KCNA4P22459 653 aa13.16□□□□□ -0.3
LTBR-208ENST00000541005 CA4P22748 312 aa13.16□□□□□ -0.3
LTBR-208ENST00000541005 VIPR1P32241 457 aa13.16□□□□□ -0.3
LTBR-208ENST00000541005 PEX5P50542 639 aa13.16□□□□□ -0.3
LTBR-208ENST00000541005 NAP1L1P55209 391 aaKnown RBP13.16□□□□□ -0.3
LTBR-208ENST00000541005 SIM1P81133 766 aaPredicted RBP13.16□□□□□ -0.3
LTBR-208ENST00000541005 SHC2P98077 582 aa13.16□□□□□ -0.3
LTBR-208ENST00000541005 ADCY2Q08462 1091 aa13.16□□□□□ -0.3
LTBR-208ENST00000541005 NIPAL4Q0D2K0 466 aa13.16□□□□□ -0.3
LTBR-208ENST00000541005 AP1B1Q10567 949 aa13.16□□□□□ -0.3
LTBR-208ENST00000541005 FZD2Q14332 565 aa13.16□□□□□ -0.3
LTBR-208ENST00000541005 LRRC14Q15048 493 aa13.16□□□□□ -0.3
LTBR-208ENST00000541005 TRIP6Q15654 476 aaKnown RBP13.16□□□□□ -0.3
LTBR-208ENST00000541005 PRAMEF14Q5SWL7 426 aa13.16□□□□□ -0.3
LTBR-208ENST00000541005 USP45Q70EL2 814 aa13.16□□□□□ -0.3
LTBR-208ENST00000541005 PARGQ86W56 976 aa13.16□□□□□ -0.3
LTBR-208ENST00000541005 CCDC50Q8IVM0 306 aa13.16□□□□□ -0.3
LTBR-208ENST00000541005 SYCE1Q8N0S2 351 aa13.16□□□□□ -0.3
LTBR-208ENST00000541005 PDCD6IPQ8WUM4 868 aaKnown RBP13.16□□□□□ -0.3
LTBR-208ENST00000541005 LRRN4Q8WUT4 740 aa13.16□□□□□ -0.3
LTBR-208ENST00000541005 SCRN2Q96FV2 425 aa13.16□□□□□ -0.3
LTBR-208ENST00000541005 MBNL1Q9NR56 388 aaKnown RBP13.16□□□□□ -0.3
LTBR-208ENST00000541005 B4GALT6Q9UBX8 382 aa13.16□□□□□ -0.3
LTBR-208ENST00000541005 TRIM10Q9UDY6 481 aa13.16□□□□□ -0.3
LTBR-208ENST00000541005 COQ6Q9Y2Z9 468 aa13.16□□□□□ -0.3
LTBR-208ENST00000541005 ADGRG1Q9Y653 693 aa13.16□□□□□ -0.3
LTBR-208ENST00000541005 A0A0U1RQJ8 604 aa13.15□□□□□ -0.3
LTBR-208ENST00000541005 MACROD2A1Z1Q3 448 aa13.15□□□□□ -0.3
LTBR-208ENST00000541005 NPIPB15A6NHN6 443 aaPredicted RBP13.15□□□□□ -0.3
LTBR-208ENST00000541005 MIF4GDA9UHW6 222 aaKnown RBP13.15□□□□□ -0.3
LTBR-208ENST00000541005 APOC4-APOC2K7ER74 178 aa13.15□□□□□ -0.3
LTBR-208ENST00000541005 MTSS1O43312 755 aa13.15□□□□□ -0.3
LTBR-208ENST00000541005 LZTS3O60299 673 aaPredicted RBP13.15□□□□□ -0.3
LTBR-208ENST00000541005 PIAS2O75928 621 aa13.15□□□□□ -0.3
LTBR-208ENST00000541005 NEBLO76041 1014 aa13.15□□□□□ -0.3
LTBR-208ENST00000541005 DKK1O94907 266 aa13.15□□□□□ -0.3
LTBR-208ENST00000541005 PRLP01236 227 aa13.15□□□□□ -0.3
LTBR-208ENST00000541005 APOC2P02655 101 aa13.15□□□□□ -0.3
LTBR-208ENST00000541005 MMP2P08253 660 aa13.15□□□□□ -0.3
LTBR-208ENST00000541005 CYP2A6P11509 494 aaPredicted RBP13.15□□□□□ -0.3
LTBR-208ENST00000541005 LHCGRP22888 699 aa13.15□□□□□ -0.3
LTBR-208ENST00000541005 SKOR1P84550 965 aa13.15□□□□□ -0.3
LTBR-208ENST00000541005 SEMG2Q02383 582 aa13.15□□□□□ -0.3
LTBR-208ENST00000541005 ITKQ08881 620 aa13.15□□□□□ -0.3
LTBR-208ENST00000541005 MTM1Q13496 603 aa13.15□□□□□ -0.3
LTBR-208ENST00000541005 PDE1CQ14123 709 aaPredicted RBP13.15□□□□□ -0.3
LTBR-208ENST00000541005 CNGA3Q16281 694 aa13.15□□□□□ -0.3
LTBR-208ENST00000541005 TPRG1LQ5T0D9 272 aa13.15□□□□□ -0.3
LTBR-208ENST00000541005 KAZNQ674X7 775 aa13.15□□□□□ -0.3
LTBR-208ENST00000541005 MACC1Q6ZN28 852 aa13.15□□□□□ -0.3
LTBR-208ENST00000541005 ZNF662Q6ZS27 426 aa13.15□□□□□ -0.3
LTBR-208ENST00000541005 GATAD2AQ86YP4 633 aa13.15□□□□□ -0.3
LTBR-208ENST00000541005 CBARPQ8N350 705 aaPredicted RBP13.15□□□□□ -0.3
LTBR-208ENST00000541005 RNF10Q8N5U6 811 aaKnown RBP13.15□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms