RNA–Protein interactions for RNA: ENST00000540438.5

USP28-208, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 3,015 nt, Biotype nonsense mediated decay.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-208ENST00000540438 OR1I1O60431 355 aa16.98■□□□□ 0.31
USP28-208ENST00000540438 ACADSP16219 412 aa16.98■□□□□ 0.31
USP28-208ENST00000540438 PMLP29590 882 aa16.98■□□□□ 0.31
USP28-208ENST00000540438 DSG1Q02413 1049 aa16.98■□□□□ 0.31
USP28-208ENST00000540438 TRIM71Q2Q1W2 868 aaKnown RBP16.98■□□□□ 0.31
USP28-208ENST00000540438 DHDDSQ86SQ9 333 aa16.98■□□□□ 0.31
USP28-208ENST00000540438 WDR41Q9HAD4 459 aa16.98■□□□□ 0.31
USP28-208ENST00000540438 STARD7Q9NQZ5 370 aa16.98■□□□□ 0.31
USP28-208ENST00000540438 PCDHB8Q9UN66 801 aa16.98■□□□□ 0.31
USP28-208ENST00000540438 SPO11Q9Y5K1 396 aa16.98■□□□□ 0.31
USP28-208ENST00000540438 SCN4AP35499 1836 aa16.98■□□□□ 0.31
USP28-208ENST00000540438 TBKBP1A7MCY6 615 aa16.98■□□□□ 0.31
USP28-208ENST00000540438 ENPP3O14638 875 aa16.98■□□□□ 0.31
USP28-208ENST00000540438 FGF10O15520 208 aaPredicted RBP16.98■□□□□ 0.31
USP28-208ENST00000540438 PQBP1O60828 265 aaKnown RBP16.98■□□□□ 0.31
USP28-208ENST00000540438 CASP2P42575 452 aa16.98■□□□□ 0.31
USP28-208ENST00000540438 FLOT2Q14254 428 aa16.98■□□□□ 0.31
USP28-208ENST00000540438 CUZD1Q86UP6 607 aa16.98■□□□□ 0.31
USP28-208ENST00000540438 IMP4Q96G21 291 aaKnown RBP16.98■□□□□ 0.31
USP28-208ENST00000540438 SLC25A51Q9H1U9 297 aa16.98■□□□□ 0.31
USP28-208ENST00000540438 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP16.98■□□□□ 0.31
USP28-208ENST00000540438 ZNF212Q9UDV6 495 aa16.98■□□□□ 0.31
USP28-208ENST00000540438 TLR6Q9Y2C9 796 aa16.98■□□□□ 0.31
USP28-208ENST00000540438 ZFP37Q9Y6Q3 630 aaPredicted RBP16.98■□□□□ 0.31
USP28-208ENST00000540438 H3BMM5 538 aa16.97■□□□□ 0.31
USP28-208ENST00000540438 SDHDO14521 159 aa16.97■□□□□ 0.31
USP28-208ENST00000540438 VNN2O95498 520 aa16.97■□□□□ 0.31
USP28-208ENST00000540438 GKP32189 559 aa16.97■□□□□ 0.31
USP28-208ENST00000540438 HADHAP40939 763 aa16.97■□□□□ 0.31
USP28-208ENST00000540438 RAB27AP51159 221 aa16.97■□□□□ 0.31
USP28-208ENST00000540438 POLE2P56282 527 aa16.97■□□□□ 0.31
USP28-208ENST00000540438 PRKAA1Q13131 559 aa16.97■□□□□ 0.31
USP28-208ENST00000540438 NAIF1Q69YI7 327 aaPredicted RBP16.97■□□□□ 0.31
USP28-208ENST00000540438 ZNF549Q6P9A3 640 aa16.97■□□□□ 0.31
USP28-208ENST00000540438 POTEHQ6S545 545 aa16.97■□□□□ 0.31
USP28-208ENST00000540438 CILP2Q8IUL8 1156 aa16.97■□□□□ 0.31
USP28-208ENST00000540438 DDIASQ8IXT1 998 aa16.97■□□□□ 0.31
USP28-208ENST00000540438 KYQ8NBH2 561 aa16.97■□□□□ 0.31
USP28-208ENST00000540438 ARRDC2Q8TBH0 407 aa16.97■□□□□ 0.31
USP28-208ENST00000540438 SEMA4BQ9NPR2 832 aaPredicted RBP16.97■□□□□ 0.31
USP28-208ENST00000540438 IKZF3Q9UKT9 509 aa16.97■□□□□ 0.31
USP28-208ENST00000540438 LRCH1Q9Y2L9 728 aa16.97■□□□□ 0.31
USP28-208ENST00000540438 V9GYQ6 96 aa16.97■□□□□ 0.31
USP28-208ENST00000540438 NBNO60934 754 aa16.97■□□□□ 0.31
USP28-208ENST00000540438 GPC4O75487 556 aa16.97■□□□□ 0.31
USP28-208ENST00000540438 PAMP19021 973 aa16.97■□□□□ 0.31
USP28-208ENST00000540438 CBLBQ13191 982 aa16.97■□□□□ 0.31
USP28-208ENST00000540438 NRF1Q16656 503 aa16.97■□□□□ 0.31
USP28-208ENST00000540438 FOXB2Q5VYV0 432 aa16.97■□□□□ 0.31
USP28-208ENST00000540438 CCSAPQ6IQ19 270 aaPredicted RBP16.97■□□□□ 0.31
USP28-208ENST00000540438 DCP1BQ8IZD4 617 aaKnown RBP16.97■□□□□ 0.31
USP28-208ENST00000540438 ACTRT2Q8TDY3 377 aa16.97■□□□□ 0.31
USP28-208ENST00000540438 TRPC4APQ8TEL6 797 aa16.97■□□□□ 0.31
USP28-208ENST00000540438 MTPAPQ9NVV4 582 aaKnown RBP eCLIP16.97■□□□□ 0.31
USP28-208ENST00000540438 MTMR11A4FU01 709 aa16.96■□□□□ 0.31
USP28-208ENST00000540438 TPST1O60507 370 aa16.96■□□□□ 0.31
USP28-208ENST00000540438 SNAP91O60641 907 aa16.96■□□□□ 0.31
USP28-208ENST00000540438 SMIM24O75264 130 aa16.96■□□□□ 0.31
USP28-208ENST00000540438 PGM3O95394 542 aa16.96■□□□□ 0.31
USP28-208ENST00000540438 OR1D2P34982 312 aa16.96■□□□□ 0.31
USP28-208ENST00000540438 MSLNQ13421 630 aaPredicted RBP16.96■□□□□ 0.31
USP28-208ENST00000540438 PDAP1Q13442 181 aaKnown RBP16.96■□□□□ 0.31
USP28-208ENST00000540438 LBRQ14739 615 aaKnown RBP16.96■□□□□ 0.31
USP28-208ENST00000540438 ISL2Q96A47 359 aa16.96■□□□□ 0.31
USP28-208ENST00000540438 SLC39A13Q96H72 371 aa16.96■□□□□ 0.31
USP28-208ENST00000540438 UBE2OQ9C0C9 1292 aaKnown RBP16.96■□□□□ 0.31
USP28-208ENST00000540438 CASP8AP2Q9UKL3 1982 aa16.96■□□□□ 0.31
USP28-208ENST00000540438 HEATR9A2RTY3 570 aa16.96■□□□□ 0.31
USP28-208ENST00000540438 RGSL1A5PLK6 1076 aa16.96■□□□□ 0.31
USP28-208ENST00000540438 UGP2Q16851 508 aa16.96■□□□□ 0.31
USP28-208ENST00000540438 RNF180Q86T96 592 aa16.96■□□□□ 0.31
USP28-208ENST00000540438 OR4K2Q8NGD2 314 aa16.96■□□□□ 0.31
USP28-208ENST00000540438 RAET1EQ8TD07 263 aa16.96■□□□□ 0.31
USP28-208ENST00000540438 LDB2O43679 373 aa16.96■□□□□ 0.3
USP28-208ENST00000540438 LUC7L3O95232 432 aaKnown RBP16.96■□□□□ 0.3
USP28-208ENST00000540438 S1PR4O95977 384 aa16.96■□□□□ 0.3
USP28-208ENST00000540438 LINC00032P0C843 101 aa16.96■□□□□ 0.3
USP28-208ENST00000540438 PRDX3P30048 256 aaKnown RBP16.96■□□□□ 0.3
USP28-208ENST00000540438 PPARGP37231 505 aaPredicted RBP16.96■□□□□ 0.3
USP28-208ENST00000540438 AGTR2P50052 363 aa16.96■□□□□ 0.3
USP28-208ENST00000540438 FAM91A1Q658Y4 838 aa16.96■□□□□ 0.3
USP28-208ENST00000540438 TIGD7Q6NT04 549 aaPredicted RBP16.96■□□□□ 0.3
USP28-208ENST00000540438 PGM2L1Q6PCE3 622 aa16.96■□□□□ 0.3
USP28-208ENST00000540438 IFNEQ86WN2 208 aa16.96■□□□□ 0.3
USP28-208ENST00000540438 PTGR2Q8N8N7 351 aaPredicted RBP16.96■□□□□ 0.3
USP28-208ENST00000540438 LPCAT1Q8NF37 534 aa16.96■□□□□ 0.3
USP28-208ENST00000540438 HMGCLL1Q8TB92 370 aa16.96■□□□□ 0.3
USP28-208ENST00000540438 SLC30A3Q99726 388 aa16.96■□□□□ 0.3
USP28-208ENST00000540438 SCML2Q9UQR0 700 aa16.96■□□□□ 0.3
USP28-208ENST00000540438 A0A1B0GTW7 788 aa16.95■□□□□ 0.3
USP28-208ENST00000540438 UNCXA6NJT0 531 aa16.95■□□□□ 0.3
USP28-208ENST00000540438 E7ENX8 843 aa16.95■□□□□ 0.3
USP28-208ENST00000540438 KPNA6O60684 536 aa16.95■□□□□ 0.3
USP28-208ENST00000540438 IGHA2P01877 340 aa16.95■□□□□ 0.3
USP28-208ENST00000540438 CTPS1P17812 591 aa16.95■□□□□ 0.3
USP28-208ENST00000540438 ATF6P18850 670 aa16.95■□□□□ 0.3
USP28-208ENST00000540438 HNRNPDQ14103 355 aaKnown RBP16.95■□□□□ 0.3
USP28-208ENST00000540438 CAPRIN1Q14444 709 aaKnown RBP16.95■□□□□ 0.3
USP28-208ENST00000540438 OR4D1Q15615 310 aa16.95■□□□□ 0.3
USP28-208ENST00000540438 C18orf21Q32NC0 220 aaPredicted RBP16.95■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms