RNA–Protein interactions for RNA: ENST00000538475.5

USP28-207, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 1,081 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-207ENST00000538475 MORF4L1Q9UBU8 362 aa6.75□□□□□ -1.33
USP28-207ENST00000538475 CD300AQ9UGN4 299 aa6.75□□□□□ -1.33
USP28-207ENST00000538475 TRAF6Q9Y4K3 522 aa6.75□□□□□ -1.33
USP28-207ENST00000538475 PCDHB4Q9Y5E5 795 aa6.75□□□□□ -1.33
USP28-207ENST00000538475 PCDHAC2Q9Y5I4 1007 aa6.75□□□□□ -1.33
USP28-207ENST00000538475 SPO11Q9Y5K1 396 aa6.75□□□□□ -1.33
USP28-207ENST00000538475 STYXL1Q9Y6J8 313 aa6.75□□□□□ -1.33
USP28-207ENST00000538475 MIA3Q5JRA6 1907 aa6.74□□□□□ -1.33
USP28-207ENST00000538475 C1orf232A0A0U1RR37 186 aa6.74□□□□□ -1.33
USP28-207ENST00000538475 MAGEB16A2A368 324 aa6.74□□□□□ -1.33
USP28-207ENST00000538475 TYW5A2RUC4 315 aaKnown RBP6.74□□□□□ -1.33
USP28-207ENST00000538475 TCAF2A6NFQ2 919 aa6.74□□□□□ -1.33
USP28-207ENST00000538475 NOTOA8MTQ0 251 aa6.74□□□□□ -1.33
USP28-207ENST00000538475 FADS2P1A8MWK0 482 aa6.74□□□□□ -1.33
USP28-207ENST00000538475 CXorf49A8MYA2 514 aaPredicted RBP6.74□□□□□ -1.33
USP28-207ENST00000538475 HACD1B0YJ81 288 aa6.74□□□□□ -1.33
USP28-207ENST00000538475 F8VP50 259 aa6.74□□□□□ -1.33
USP28-207ENST00000538475 AP3B1O00203 1094 aa6.74□□□□□ -1.33
USP28-207ENST00000538475 ASNA1O43681 348 aa6.74□□□□□ -1.33
USP28-207ENST00000538475 NPHS1O60500 1241 aa6.74□□□□□ -1.33
USP28-207ENST00000538475 UGT2B11O75310 529 aa6.74□□□□□ -1.33
USP28-207ENST00000538475 JRKO75564 520 aa6.74□□□□□ -1.33
USP28-207ENST00000538475 TPPPO94811 219 aa6.74□□□□□ -1.33
USP28-207ENST00000538475 MYO1DO94832 1006 aa6.74□□□□□ -1.33
USP28-207ENST00000538475 PTTG1O95997 202 aa6.74□□□□□ -1.33
USP28-207ENST00000538475 CCNE2O96020 404 aa6.74□□□□□ -1.33
USP28-207ENST00000538475 HPRP00739 348 aa6.74□□□□□ -1.33
USP28-207ENST00000538475 PIGRP01833 764 aa6.74□□□□□ -1.33
USP28-207ENST00000538475 HLA-DRAP01903 254 aa6.74□□□□□ -1.33
USP28-207ENST00000538475 TFPTP0C1Z6 253 aa6.74□□□□□ -1.33
USP28-207ENST00000538475 CSH1P0DML2 217 aa6.74□□□□□ -1.33
USP28-207ENST00000538475 CSH2P0DML3 217 aa6.74□□□□□ -1.33
USP28-207ENST00000538475 ADH5P11766 374 aa6.74□□□□□ -1.33
USP28-207ENST00000538475 HSD17B1P14061 328 aa6.74□□□□□ -1.33
USP28-207ENST00000538475 PGAM1P18669 254 aa6.74□□□□□ -1.33
USP28-207ENST00000538475 PSMA2P25787 234 aa6.74□□□□□ -1.33
USP28-207ENST00000538475 SFNP31947 248 aa6.74□□□□□ -1.33
USP28-207ENST00000538475 GJC1P36383 396 aa6.74□□□□□ -1.33
USP28-207ENST00000538475 NUDT1P36639 197 aa6.74□□□□□ -1.33
USP28-207ENST00000538475 HPCAL1P37235 193 aa6.74□□□□□ -1.33
USP28-207ENST00000538475 ACADSBP45954 432 aa6.74□□□□□ -1.33
USP28-207ENST00000538475 NR2C2P49116 596 aa6.74□□□□□ -1.33
USP28-207ENST00000538475 RARRES1P49788 294 aa6.74□□□□□ -1.33
USP28-207ENST00000538475 CSE1LP55060 971 aaKnown RBP6.74□□□□□ -1.33
USP28-207ENST00000538475 GNG2P59768 71 aa6.74□□□□□ -1.33
USP28-207ENST00000538475 BNC1Q01954 994 aa6.74□□□□□ -1.33
USP28-207ENST00000538475 BNIP3Q12983 259 aa6.74□□□□□ -1.33
USP28-207ENST00000538475 SELENBP1Q13228 472 aa6.74□□□□□ -1.33
USP28-207ENST00000538475 DMP1Q13316 513 aaPredicted RBP6.74□□□□□ -1.33
USP28-207ENST00000538475 SEMA5AQ13591 1074 aa6.74□□□□□ -1.33
USP28-207ENST00000538475 SQLEQ14534 574 aa6.74□□□□□ -1.33
USP28-207ENST00000538475 NFIXQ14938 502 aa6.74□□□□□ -1.33
USP28-207ENST00000538475 VPS72Q15906 364 aa6.74□□□□□ -1.33
USP28-207ENST00000538475 NRF1Q16656 503 aa6.74□□□□□ -1.33
USP28-207ENST00000538475 DGUOKQ16854 277 aa6.74□□□□□ -1.33
USP28-207ENST00000538475 ZNF181Q2M3W8 571 aa6.74□□□□□ -1.33
USP28-207ENST00000538475 ATP13A4Q4VNC1 1196 aa6.74□□□□□ -1.33
USP28-207ENST00000538475 BOLA3Q53S33 107 aa6.74□□□□□ -1.33
USP28-207ENST00000538475 SPANXN3Q5MJ09 141 aa6.74□□□□□ -1.33
USP28-207ENST00000538475 MROH9Q5TGP6 573 aa6.74□□□□□ -1.33
USP28-207ENST00000538475 SIGIRRQ6IA17 410 aa6.74□□□□□ -1.33
USP28-207ENST00000538475 LCN8Q6JVE9 175 aa6.74□□□□□ -1.33
USP28-207ENST00000538475 C8orf82Q6P1X6 216 aaPredicted RBP6.74□□□□□ -1.33
USP28-207ENST00000538475 PAOXQ6QHF9 649 aa6.74□□□□□ -1.33
USP28-207ENST00000538475 NXPE4Q6UWF7 544 aa6.74□□□□□ -1.33
USP28-207ENST00000538475 KCTD8Q6ZWB6 473 aa6.74□□□□□ -1.33
USP28-207ENST00000538475 PRSS48Q7RTY5 328 aa6.74□□□□□ -1.33
USP28-207ENST00000538475 CLEC14AQ86T13 490 aa6.74□□□□□ -1.33
USP28-207ENST00000538475 LINC00523Q86TU6 105 aa6.74□□□□□ -1.33
USP28-207ENST00000538475 DHFR2Q86XF0 187 aa6.74□□□□□ -1.33
USP28-207ENST00000538475 RFX6Q8HWS3 928 aa6.74□□□□□ -1.33
USP28-207ENST00000538475 KSR1Q8IVT5 923 aa6.74□□□□□ -1.33
USP28-207ENST00000538475 C10orf107Q8IVU9 208 aa6.74□□□□□ -1.33
USP28-207ENST00000538475 TBC1D21Q8IYX1 336 aa6.74□□□□□ -1.33
USP28-207ENST00000538475 MYO1HQ8N1T3 1032 aa6.74□□□□□ -1.33
USP28-207ENST00000538475 FAM71DQ8N9W8 422 aa6.74□□□□□ -1.33
USP28-207ENST00000538475 KCTD6Q8NC69 237 aa6.74□□□□□ -1.33
USP28-207ENST00000538475 PAPD5Q8NDF8 572 aaKnown RBP6.74□□□□□ -1.33
USP28-207ENST00000538475 TMEM161BQ8NDZ6 487 aa6.74□□□□□ -1.33
USP28-207ENST00000538475 PDZD8Q8NEN9 1154 aa6.74□□□□□ -1.33
USP28-207ENST00000538475 SHKBP1Q8TBC3 707 aa6.74□□□□□ -1.33
USP28-207ENST00000538475 TSPEARQ8WU66 669 aa6.74□□□□□ -1.33
USP28-207ENST00000538475 HDAC2Q92769 488 aaKnown RBP6.74□□□□□ -1.33
USP28-207ENST00000538475 RMDN1Q96DB5 314 aa6.74□□□□□ -1.33
USP28-207ENST00000538475 ZNF512Q96ME7 567 aaPredicted RBP6.74□□□□□ -1.33
USP28-207ENST00000538475 ZNF577Q9BSK1 485 aa6.74□□□□□ -1.33
USP28-207ENST00000538475 RHOBTB2Q9BYZ6 727 aa6.74□□□□□ -1.33
USP28-207ENST00000538475 EPS8L2Q9H6S3 715 aa6.74□□□□□ -1.33
USP28-207ENST00000538475 SMYD2Q9NRG4 433 aa6.74□□□□□ -1.33
USP28-207ENST00000538475 AGPAT4Q9NRZ5 378 aa6.74□□□□□ -1.33
USP28-207ENST00000538475 TMEM45AQ9NWC5 275 aa6.74□□□□□ -1.33
USP28-207ENST00000538475 SMOXQ9NWM0 555 aa6.74□□□□□ -1.33
USP28-207ENST00000538475 PAK1IP1Q9NWT1 392 aaPredicted RBP6.74□□□□□ -1.33
USP28-207ENST00000538475 OXSMQ9NWU1 459 aa6.74□□□□□ -1.33
USP28-207ENST00000538475 SMPD3Q9NY59 655 aaPredicted RBP6.74□□□□□ -1.33
USP28-207ENST00000538475 TFCP2L1Q9NZI6 479 aa6.74□□□□□ -1.33
USP28-207ENST00000538475 TMEM181Q9P2C4 612 aa6.74□□□□□ -1.33
USP28-207ENST00000538475 TXNDC16Q9P2K2 825 aa6.74□□□□□ -1.33
USP28-207ENST00000538475 ARHGAP28Q9P2N2 729 aa6.74□□□□□ -1.33
USP28-207ENST00000538475 ZNF639Q9UID6 485 aa6.74□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 93.4 ms