RNA–Protein interactions for RNA: ENST00000507778.1

HMGB1P28-201, Transcript of high mobility group box 1 pseudogene 28, humanhuman

BASIC

Gene HMGB1P28, Length 552 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P28-201ENST00000507778 ZNF215Q9UL58 517 aaPredicted RBP4.2□□□□□ -1.74
HMGB1P28-201ENST00000507778 NFE2L3Q9Y4A8 694 aa4.2□□□□□ -1.74
HMGB1P28-201ENST00000507778 SRPRBQ9Y5M8 271 aaKnown RBP4.2□□□□□ -1.74
HMGB1P28-201ENST00000507778 RAI2Q9Y5P3 530 aa4.2□□□□□ -1.74
HMGB1P28-201ENST00000507778 LY6G6EA0A0G2JKS1 128 aa4.19□□□□□ -1.74
HMGB1P28-201ENST00000507778 FRMD3A2A2Y4 597 aa4.19□□□□□ -1.74
HMGB1P28-201ENST00000507778 DNAJC9-AS1A6NH13 148 aa4.19□□□□□ -1.74
HMGB1P28-201ENST00000507778 H0YGN5 161 aa4.19□□□□□ -1.74
HMGB1P28-201ENST00000507778 SOCS2O14508 198 aa4.19□□□□□ -1.74
HMGB1P28-201ENST00000507778 VILLO15195 856 aa4.19□□□□□ -1.74
HMGB1P28-201ENST00000507778 SLC25A12O75746 678 aa4.19□□□□□ -1.74
HMGB1P28-201ENST00000507778 TSPAN9O75954 239 aa4.19□□□□□ -1.74
HMGB1P28-201ENST00000507778 CYP1A2P05177 515 aa4.19□□□□□ -1.74
HMGB1P28-201ENST00000507778 MMP2P08253 660 aa4.19□□□□□ -1.74
HMGB1P28-201ENST00000507778 ARSBP15848 533 aa4.19□□□□□ -1.74
HMGB1P28-201ENST00000507778 F2RL1P55085 397 aa4.19□□□□□ -1.74
HMGB1P28-201ENST00000507778 P2RX3P56373 397 aa4.19□□□□□ -1.74
HMGB1P28-201ENST00000507778 ZP1P60852 638 aa4.19□□□□□ -1.74
HMGB1P28-201ENST00000507778 SORDQ00796 357 aa4.19□□□□□ -1.74
HMGB1P28-201ENST00000507778 MC1RQ01726 317 aa4.19□□□□□ -1.74
HMGB1P28-201ENST00000507778 CREB5Q02930 508 aa4.19□□□□□ -1.74
HMGB1P28-201ENST00000507778 ST3GAL1Q11201 340 aa4.19□□□□□ -1.74
HMGB1P28-201ENST00000507778 LAMB3Q13751 1172 aa4.19□□□□□ -1.74
HMGB1P28-201ENST00000507778 GPR18Q14330 331 aa4.19□□□□□ -1.74
HMGB1P28-201ENST00000507778 WTAPQ15007 396 aa4.19□□□□□ -1.74
HMGB1P28-201ENST00000507778 CCDC142Q17RM4 750 aa4.19□□□□□ -1.74
HMGB1P28-201ENST00000507778 USP41Q3LFD5 358 aa4.19□□□□□ -1.74
HMGB1P28-201ENST00000507778 FBXO46Q6PJ61 603 aaPredicted RBP4.19□□□□□ -1.74
HMGB1P28-201ENST00000507778 COLCA1Q6ZS62 124 aa4.19□□□□□ -1.74
HMGB1P28-201ENST00000507778 MON1BQ7L1V2 547 aa4.19□□□□□ -1.74
HMGB1P28-201ENST00000507778 LINGO2Q7L985 606 aa4.19□□□□□ -1.74
HMGB1P28-201ENST00000507778 ZNF367Q7RTV3 350 aa4.19□□□□□ -1.74
HMGB1P28-201ENST00000507778 PIM3Q86V86 326 aa4.19□□□□□ -1.74
HMGB1P28-201ENST00000507778 BEST2Q8NFU1 509 aa4.19□□□□□ -1.74
HMGB1P28-201ENST00000507778 HUS1BQ8NHY5 278 aa4.19□□□□□ -1.74
HMGB1P28-201ENST00000507778 GPT2Q8TD30 523 aa4.19□□□□□ -1.74
HMGB1P28-201ENST00000507778 SGCDQ92629 289 aa4.19□□□□□ -1.74
HMGB1P28-201ENST00000507778 NSUN4Q96CB9 384 aaKnown RBP4.19□□□□□ -1.74
HMGB1P28-201ENST00000507778 TMEM68Q96MH6 324 aa4.19□□□□□ -1.74
HMGB1P28-201ENST00000507778 NEUROD6Q96NK8 337 aa4.19□□□□□ -1.74
HMGB1P28-201ENST00000507778 NCAPGQ9BPX3 1015 aa4.19□□□□□ -1.74
HMGB1P28-201ENST00000507778 NUDT16L1Q9BRJ7 211 aaKnown RBP4.19□□□□□ -1.74
HMGB1P28-201ENST00000507778 KRCC1Q9NPI7 259 aaPredicted RBP4.19□□□□□ -1.74
HMGB1P28-201ENST00000507778 ELOVL5Q9NYP7 299 aa4.19□□□□□ -1.74
HMGB1P28-201ENST00000507778 ADD3Q9UEY8 706 aaKnown RBP4.19□□□□□ -1.74
HMGB1P28-201ENST00000507778 MTMR6Q9Y217 621 aa4.19□□□□□ -1.74
HMGB1P28-201ENST00000507778 CEPT1Q9Y6K0 416 aa4.19□□□□□ -1.74
HMGB1P28-201ENST00000507778 KDM4EB2RXH2 506 aaPredicted RBP4.18□□□□□ -1.74
HMGB1P28-201ENST00000507778 LDB2O43679 373 aa4.18□□□□□ -1.74
HMGB1P28-201ENST00000507778 MOSPD3O75425 235 aa4.18□□□□□ -1.74
HMGB1P28-201ENST00000507778 NDUFS3O75489 264 aa4.18□□□□□ -1.74
HMGB1P28-201ENST00000507778 NKX2-2O95096 273 aa4.18□□□□□ -1.74
HMGB1P28-201ENST00000507778 NDUFB4O95168 129 aa4.18□□□□□ -1.74
HMGB1P28-201ENST00000507778 HSP90AA1P07900 732 aaKnown RBP4.18□□□□□ -1.74
HMGB1P28-201ENST00000507778 IL7RP16871 459 aa4.18□□□□□ -1.74
HMGB1P28-201ENST00000507778 ZNF182P17025 639 aaPredicted RBP4.18□□□□□ -1.74
HMGB1P28-201ENST00000507778 CD58P19256 250 aa4.18□□□□□ -1.74
HMGB1P28-201ENST00000507778 GNLYP22749 145 aa4.18□□□□□ -1.74
HMGB1P28-201ENST00000507778 CHATP28329 748 aa4.18□□□□□ -1.74
HMGB1P28-201ENST00000507778 THPOP40225 353 aa4.18□□□□□ -1.74
HMGB1P28-201ENST00000507778 PSMB10P40306 273 aa4.18□□□□□ -1.74
HMGB1P28-201ENST00000507778 ADORA2A-AS1P86434 159 aa4.18□□□□□ -1.74
HMGB1P28-201ENST00000507778 CHAF1BQ13112 559 aa4.18□□□□□ -1.74
HMGB1P28-201ENST00000507778 NEDD9Q14511 834 aa4.18□□□□□ -1.74
HMGB1P28-201ENST00000507778 KRT24Q2M2I5 525 aa4.18□□□□□ -1.74
HMGB1P28-201ENST00000507778 CXorf66Q5JRM2 361 aaPredicted RBP4.18□□□□□ -1.74
HMGB1P28-201ENST00000507778 C6orf141Q5SZD1 244 aa4.18□□□□□ -1.74
HMGB1P28-201ENST00000507778 GKAP1Q5VSY0 366 aaPredicted RBP4.18□□□□□ -1.74
HMGB1P28-201ENST00000507778 OTUD1Q5VV17 481 aaPredicted RBP4.18□□□□□ -1.74
HMGB1P28-201ENST00000507778 Q6ZTK2 550 aa4.18□□□□□ -1.74
HMGB1P28-201ENST00000507778 CHST9Q7L1S5 443 aa4.18□□□□□ -1.74
HMGB1P28-201ENST00000507778 HAPLN4Q86UW8 402 aa4.18□□□□□ -1.74
HMGB1P28-201ENST00000507778 TICAM1Q8IUC6 712 aa4.18□□□□□ -1.74
HMGB1P28-201ENST00000507778 WDR63Q8IWG1 891 aa4.18□□□□□ -1.74
HMGB1P28-201ENST00000507778 SLC35F3Q8IY50 421 aa4.18□□□□□ -1.74
HMGB1P28-201ENST00000507778 ADGRF2Q8IZF7 708 aa4.18□□□□□ -1.74
HMGB1P28-201ENST00000507778 ZBTB2Q8N680 514 aa4.18□□□□□ -1.74
HMGB1P28-201ENST00000507778 CCDC89Q8N998 374 aa4.18□□□□□ -1.74
HMGB1P28-201ENST00000507778 ARHGEF26Q96DR7 871 aa4.18□□□□□ -1.74
HMGB1P28-201ENST00000507778 FAM120BQ96EK7 910 aaKnown RBP4.18□□□□□ -1.74
HMGB1P28-201ENST00000507778 VCPIP1Q96JH7 1222 aa4.18□□□□□ -1.74
HMGB1P28-201ENST00000507778 APOLD1Q96LR9 279 aa4.18□□□□□ -1.74
HMGB1P28-201ENST00000507778 C1orf74Q96LT6 269 aa4.18□□□□□ -1.74
HMGB1P28-201ENST00000507778 FAM110AQ9BQ89 295 aa4.18□□□□□ -1.74
HMGB1P28-201ENST00000507778 RANGRFQ9HD47 186 aaPredicted RBP4.18□□□□□ -1.74
HMGB1P28-201ENST00000507778 ZBTB40Q9NUA8 1239 aa4.18□□□□□ -1.74
HMGB1P28-201ENST00000507778 RABGAP1Q9Y3P9 1069 aa4.18□□□□□ -1.74
HMGB1P28-201ENST00000507778 RPS10-NUDT3A0A1W2PQS6 291 aa4.17□□□□□ -1.74
HMGB1P28-201ENST00000507778 hCG_1807616A0A1W2PRN6 198 aa4.17□□□□□ -1.74
HMGB1P28-201ENST00000507778 TMEM202A6NGA9 273 aa4.17□□□□□ -1.74
HMGB1P28-201ENST00000507778 AGAP14A8MT82 685 aa4.17□□□□□ -1.74
HMGB1P28-201ENST00000507778 I6L893 689 aaPredicted RBP4.17□□□□□ -1.74
HMGB1P28-201ENST00000507778 SCAMP1O15126 338 aa4.17□□□□□ -1.74
HMGB1P28-201ENST00000507778 ITM2AO43736 263 aa4.17□□□□□ -1.74
HMGB1P28-201ENST00000507778 PORP16435 677 aaPredicted RBP4.17□□□□□ -1.74
HMGB1P28-201ENST00000507778 NAGAP17050 411 aa4.17□□□□□ -1.74
HMGB1P28-201ENST00000507778 TNFRSF1BP20333 461 aa4.17□□□□□ -1.74
HMGB1P28-201ENST00000507778 GPTP24298 496 aa4.17□□□□□ -1.74
HMGB1P28-201ENST00000507778 MCM3P25205 808 aa4.17□□□□□ -1.74
HMGB1P28-201ENST00000507778 UBA7P41226 1012 aa4.17□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms