RNA–Protein interactions for RNA: ENST00000495039.1

VPS50-219, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 1,115 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-219ENST00000495039 FSIP1Q8NA03 581 aa3.84□□□□□ -1.79
VPS50-219ENST00000495039 ADAD2Q8NCV1 583 aaKnown RBP3.84□□□□□ -1.79
VPS50-219ENST00000495039 OR6Y1Q8NGX8 325 aa3.84□□□□□ -1.79
VPS50-219ENST00000495039 NCSTNQ92542 709 aa3.84□□□□□ -1.79
VPS50-219ENST00000495039 TBC1D20Q96BZ9 403 aa3.84□□□□□ -1.79
VPS50-219ENST00000495039 TAF1DQ9H5J8 278 aaPredicted RBP3.84□□□□□ -1.79
VPS50-219ENST00000495039 SAYSD1Q9NPB0 183 aa3.84□□□□□ -1.79
VPS50-219ENST00000495039 ATXN2Q99700 1313 aaKnown RBP3.84□□□□□ -1.79
VPS50-219ENST00000495039 ZIC3O60481 467 aa3.83□□□□□ -1.8
VPS50-219ENST00000495039 SERPINC1P01008 464 aa3.83□□□□□ -1.8
VPS50-219ENST00000495039 CDH1P12830 882 aa3.83□□□□□ -1.8
VPS50-219ENST00000495039 VEGFAP15692 232 aaPredicted RBP3.83□□□□□ -1.8
VPS50-219ENST00000495039 CST5P28325 142 aaPredicted RBP3.83□□□□□ -1.8
VPS50-219ENST00000495039 TTKP33981 857 aa3.83□□□□□ -1.8
VPS50-219ENST00000495039 PTPN9P43378 593 aa3.83□□□□□ -1.8
VPS50-219ENST00000495039 DRG2P55039 364 aaKnown RBP3.83□□□□□ -1.8
VPS50-219ENST00000495039 HDAC4P56524 1084 aa3.83□□□□□ -1.8
VPS50-219ENST00000495039 ARHGAP8P85298 464 aa3.83□□□□□ -1.8
VPS50-219ENST00000495039 LPAL2Q16609 132 aa3.83□□□□□ -1.8
VPS50-219ENST00000495039 GTSCR1Q86UQ5 136 aa3.83□□□□□ -1.8
VPS50-219ENST00000495039 EXOC8Q8IYI6 725 aa3.83□□□□□ -1.8
VPS50-219ENST00000495039 SPAG16Q8N0X2 631 aa3.83□□□□□ -1.8
VPS50-219ENST00000495039 SLC24A4Q8NFF2 622 aa3.83□□□□□ -1.8
VPS50-219ENST00000495039 SCLT1Q96NL6 688 aa3.83□□□□□ -1.8
VPS50-219ENST00000495039 KLHL1Q9NR64 748 aa3.83□□□□□ -1.8
VPS50-219ENST00000495039 KIF17Q9P2E2 1029 aa3.83□□□□□ -1.8
VPS50-219ENST00000495039 SRP68Q9UHB9 627 aaKnown RBP3.83□□□□□ -1.8
VPS50-219ENST00000495039 PLEKHD1A6NEE1 506 aa3.82□□□□□ -1.8
VPS50-219ENST00000495039 H0Y3Z8 333 aa3.82□□□□□ -1.8
VPS50-219ENST00000495039 IRAK2O43187 625 aa3.82□□□□□ -1.8
VPS50-219ENST00000495039 TUBBP07437 444 aa3.82□□□□□ -1.8
VPS50-219ENST00000495039 PIGAP37287 484 aa3.82□□□□□ -1.8
VPS50-219ENST00000495039 PNPLA4P41247 253 aa3.82□□□□□ -1.8
VPS50-219ENST00000495039 AARSP49588 968 aaKnown RBP eCLIP3.82□□□□□ -1.8
VPS50-219ENST00000495039 PPM1FP49593 454 aaPredicted RBP3.82□□□□□ -1.8
VPS50-219ENST00000495039 ARSFP54793 590 aa3.82□□□□□ -1.8
VPS50-219ENST00000495039 TUBB4BP68371 445 aa3.82□□□□□ -1.8
VPS50-219ENST00000495039 RELQ04864 619 aaPredicted RBP3.82□□□□□ -1.8
VPS50-219ENST00000495039 THOC5Q13769 683 aaKnown RBP3.82□□□□□ -1.8
VPS50-219ENST00000495039 PPP6R3Q5H9R7 873 aaPredicted RBP3.82□□□□□ -1.8
VPS50-219ENST00000495039 ANKRD45Q5TZF3 282 aa3.82□□□□□ -1.8
VPS50-219ENST00000495039 LDHAL6AQ6ZMR3 332 aa3.82□□□□□ -1.8
VPS50-219ENST00000495039 SETD9Q8NE22 299 aa3.82□□□□□ -1.8
VPS50-219ENST00000495039 GOLGA1Q92805 767 aa3.82□□□□□ -1.8
VPS50-219ENST00000495039 ALG14Q96F25 216 aa3.82□□□□□ -1.8
VPS50-219ENST00000495039 C17orf77Q96MU5 243 aa3.82□□□□□ -1.8
VPS50-219ENST00000495039 ZNF599Q96NL3 588 aa3.82□□□□□ -1.8
VPS50-219ENST00000495039 ISCA1Q9BUE6 129 aa3.82□□□□□ -1.8
VPS50-219ENST00000495039 CYSLTR2Q9NS75 346 aa3.82□□□□□ -1.8
VPS50-219ENST00000495039 IFT80Q9P2H3 777 aaPredicted RBP3.82□□□□□ -1.8
VPS50-219ENST00000495039 CDC14AQ9UNH5 594 aa3.82□□□□□ -1.8
VPS50-219ENST00000495039 PCDHGB3Q9Y5G1 929 aa3.82□□□□□ -1.8
VPS50-219ENST00000495039 PSAT1Q9Y617 370 aa3.82□□□□□ -1.8
VPS50-219ENST00000495039 IGKV6D-41A0A0C4DH26 115 aa3.81□□□□□ -1.8
VPS50-219ENST00000495039 E7EVH7 732 aa3.81□□□□□ -1.8
VPS50-219ENST00000495039 SEPT4O43236 478 aa3.81□□□□□ -1.8
VPS50-219ENST00000495039 NDUFS7O75251 213 aa3.81□□□□□ -1.8
VPS50-219ENST00000495039 FAM155BO75949 473 aa3.81□□□□□ -1.8
VPS50-219ENST00000495039 KRT38O76015 456 aa3.81□□□□□ -1.8
VPS50-219ENST00000495039 ADD2P35612 726 aa3.81□□□□□ -1.8
VPS50-219ENST00000495039 PRKAA2P54646 552 aa3.81□□□□□ -1.8
VPS50-219ENST00000495039 ARL4CP56559 192 aa3.81□□□□□ -1.8
VPS50-219ENST00000495039 PDCLQ13371 301 aa3.81□□□□□ -1.8
VPS50-219ENST00000495039 CUL4BQ13620 913 aa3.81□□□□□ -1.8
VPS50-219ENST00000495039 TAF5Q15542 800 aa3.81□□□□□ -1.8
VPS50-219ENST00000495039 ADCK5Q3MIX3 580 aa3.81□□□□□ -1.8
VPS50-219ENST00000495039 LCE3AQ5TA76 89 aa3.81□□□□□ -1.8
VPS50-219ENST00000495039 MOGAT3Q86VF5 341 aa3.81□□□□□ -1.8
VPS50-219ENST00000495039 FTSJ3Q8IY81 847 aaKnown RBP3.81□□□□□ -1.8
VPS50-219ENST00000495039 GHDCQ8N2G8 530 aa3.81□□□□□ -1.8
VPS50-219ENST00000495039 CSGALNACT1Q8TDX6 532 aa3.81□□□□□ -1.8
VPS50-219ENST00000495039 SDCCAG3Q96C92 435 aa3.81□□□□□ -1.8
VPS50-219ENST00000495039 ITM2CQ9NQX7 267 aa3.81□□□□□ -1.8
VPS50-219ENST00000495039 C1RLQ9NZP8 487 aa3.81□□□□□ -1.8
VPS50-219ENST00000495039 NDRG3Q9UGV2 375 aa3.81□□□□□ -1.8
VPS50-219ENST00000495039 KCND3Q9UK17 655 aa3.81□□□□□ -1.8
VPS50-219ENST00000495039 FAM90A20PA6NIJ5 464 aa3.8□□□□□ -1.8
VPS50-219ENST00000495039 SOCS6O14544 535 aa3.8□□□□□ -1.8
VPS50-219ENST00000495039 CRLF1O75462 422 aa3.8□□□□□ -1.8
VPS50-219ENST00000495039 STX2P32856 288 aa3.8□□□□□ -1.8
VPS50-219ENST00000495039 RBM5P52756 815 aaKnown RBP eCLIP3.8□□□□□ -1.8
VPS50-219ENST00000495039 LMO4P61968 165 aa3.8□□□□□ -1.8
VPS50-219ENST00000495039 PPFIA1Q13136 1202 aa3.8□□□□□ -1.8
VPS50-219ENST00000495039 EFNB3Q15768 340 aa3.8□□□□□ -1.8
VPS50-219ENST00000495039 ZNF484Q5JVG2 852 aa3.8□□□□□ -1.8
VPS50-219ENST00000495039 PAPPA-AS1Q5QFB9 102 aa3.8□□□□□ -1.8
VPS50-219ENST00000495039 KRBA2Q6ZNG9 492 aa3.8□□□□□ -1.8
VPS50-219ENST00000495039 STXBP4Q6ZWJ1 553 aa3.8□□□□□ -1.8
VPS50-219ENST00000495039 SYT13Q7L8C5 426 aa3.8□□□□□ -1.8
VPS50-219ENST00000495039 ZNF354CQ86Y25 554 aa3.8□□□□□ -1.8
VPS50-219ENST00000495039 MYRIPQ8NFW9 859 aa3.8□□□□□ -1.8
VPS50-219ENST00000495039 OR10V1Q8NGI7 309 aa3.8□□□□□ -1.8
VPS50-219ENST00000495039 AFG1LQ8WV93 481 aa3.8□□□□□ -1.8
VPS50-219ENST00000495039 ZNF583Q96ND8 569 aa3.8□□□□□ -1.8
VPS50-219ENST00000495039 PLEKHA5Q9HAU0 1116 aa3.8□□□□□ -1.8
VPS50-219ENST00000495039 ENTPD7Q9NQZ7 604 aa3.8□□□□□ -1.8
VPS50-219ENST00000495039 SLC7A10Q9NS82 523 aa3.8□□□□□ -1.8
VPS50-219ENST00000495039 FAM118AQ9NWS6 357 aa3.8□□□□□ -1.8
VPS50-219ENST00000495039 NOL12Q9UGY1 213 aaKnown RBP eCLIP3.8□□□□□ -1.8
VPS50-219ENST00000495039 CNPY2Q9Y2B0 182 aa3.8□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms