RNA–Protein interactions for RNA: ENST00000492280.5

HMGN1-220, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 5

Gene HMGN1, Length 2,707 nt, Biotype retained intron, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-220ENST00000492280 ZNF549Q6P9A3 640 aa12.5□□□□□ -0.41
HMGN1-220ENST00000492280 C16orf59Q7L2K0 433 aa12.5□□□□□ -0.41
HMGN1-220ENST00000492280 TMCO2Q7Z6W1 182 aaPredicted RBP12.5□□□□□ -0.41
HMGN1-220ENST00000492280 SDCCAG8Q86SQ7 713 aaPredicted RBP12.5□□□□□ -0.41
HMGN1-220ENST00000492280 RNF180Q86T96 592 aa12.5□□□□□ -0.41
HMGN1-220ENST00000492280 CUZD1Q86UP6 607 aa12.5□□□□□ -0.41
HMGN1-220ENST00000492280 DCBLD1Q8N8Z6 715 aa12.5□□□□□ -0.41
HMGN1-220ENST00000492280 PCSK9Q8NBP7 692 aaKnown RBP12.5□□□□□ -0.41
HMGN1-220ENST00000492280 WBP2Q969T9 261 aa12.5□□□□□ -0.41
HMGN1-220ENST00000492280 TUBGCP5Q96RT8 1024 aa12.5□□□□□ -0.41
HMGN1-220ENST00000492280 MRPL57Q9BQC6 102 aaKnown RBP12.5□□□□□ -0.41
HMGN1-220ENST00000492280 ZBED2Q9BTP6 218 aa12.5□□□□□ -0.41
HMGN1-220ENST00000492280 FBXO44Q9H4M3 255 aa12.5□□□□□ -0.41
HMGN1-220ENST00000492280 GKN1Q9NS71 199 aa12.5□□□□□ -0.41
HMGN1-220ENST00000492280 CAMSAP3Q9P1Y5 1249 aaPredicted RBP12.5□□□□□ -0.41
HMGN1-220ENST00000492280 CCDC162PA2VCL2 907 aa12.5□□□□□ -0.41
HMGN1-220ENST00000492280 NCF1BA6NI72 391 aaPredicted RBP12.5□□□□□ -0.41
HMGN1-220ENST00000492280 ENO4A6NNW6 628 aa12.5□□□□□ -0.41
HMGN1-220ENST00000492280 NCF1CA8MVU1 366 aaPredicted RBP12.5□□□□□ -0.41
HMGN1-220ENST00000492280 H3BNX3 289 aa12.5□□□□□ -0.41
HMGN1-220ENST00000492280 APOA4P06727 396 aa12.5□□□□□ -0.41
HMGN1-220ENST00000492280 MYL4P12829 197 aa12.5□□□□□ -0.41
HMGN1-220ENST00000492280 NCF1P14598 390 aaPredicted RBP12.5□□□□□ -0.41
HMGN1-220ENST00000492280 SOX11P35716 441 aa12.5□□□□□ -0.41
HMGN1-220ENST00000492280 ZNF33AQ06730 810 aa12.5□□□□□ -0.41
HMGN1-220ENST00000492280 NFE2Q16621 373 aaPredicted RBP12.5□□□□□ -0.41
HMGN1-220ENST00000492280 PDCD6IPQ8WUM4 868 aaKnown RBP12.5□□□□□ -0.41
HMGN1-220ENST00000492280 ESAMQ96AP7 390 aa12.5□□□□□ -0.41
HMGN1-220ENST00000492280 IFT43Q96FT9 208 aa12.5□□□□□ -0.41
HMGN1-220ENST00000492280 BTN2A3PQ96KV6 586 aa12.5□□□□□ -0.41
HMGN1-220ENST00000492280 RTKNQ9BST9 563 aa12.5□□□□□ -0.41
HMGN1-220ENST00000492280 TRIM8Q9BZR9 551 aa12.5□□□□□ -0.41
HMGN1-220ENST00000492280 NACA2Q9H009 215 aa12.5□□□□□ -0.41
HMGN1-220ENST00000492280 FAM96AQ9H5X1 160 aa12.5□□□□□ -0.41
HMGN1-220ENST00000492280 TRPC7Q9HCX4 862 aa12.5□□□□□ -0.41
HMGN1-220ENST00000492280 STARD7Q9NQZ5 370 aa12.5□□□□□ -0.41
HMGN1-220ENST00000492280 BATF3Q9NR55 127 aa12.5□□□□□ -0.41
HMGN1-220ENST00000492280 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP12.5□□□□□ -0.415e-15■■■■□ 19.6
HMGN1-220ENST00000492280 MID2Q9UJV3 735 aa12.5□□□□□ -0.41
HMGN1-220ENST00000492280 SPO11Q9Y5K1 396 aa12.5□□□□□ -0.41
HMGN1-220ENST00000492280 A0A1W2PQ45 241 aaPredicted RBP12.49□□□□□ -0.41
HMGN1-220ENST00000492280 A0A1W2PQY0 241 aa12.49□□□□□ -0.41
HMGN1-220ENST00000492280 CAPN8A6NHC0 703 aa12.49□□□□□ -0.41
HMGN1-220ENST00000492280 A6NHS1 94 aa12.49□□□□□ -0.41
HMGN1-220ENST00000492280 H3BMM5 538 aa12.49□□□□□ -0.41
HMGN1-220ENST00000492280 UBXN8O00124 270 aa12.49□□□□□ -0.41
HMGN1-220ENST00000492280 CSPG5O95196 566 aa12.49□□□□□ -0.41
HMGN1-220ENST00000492280 S1PR4O95977 384 aa12.49□□□□□ -0.41
HMGN1-220ENST00000492280 ATP5F1P24539 256 aaPredicted RBP12.49□□□□□ -0.41
HMGN1-220ENST00000492280 CRABP2P29373 138 aa12.49□□□□□ -0.41
HMGN1-220ENST00000492280 SCNN1BP51168 640 aa12.49□□□□□ -0.41
HMGN1-220ENST00000492280 FOXA1P55317 472 aa12.49□□□□□ -0.41
HMGN1-220ENST00000492280 SP3Q02447 781 aa12.49□□□□□ -0.41
HMGN1-220ENST00000492280 GPNMBQ14956 572 aa12.49□□□□□ -0.41
HMGN1-220ENST00000492280 FAM83EQ2M2I3 478 aa12.49□□□□□ -0.41
HMGN1-220ENST00000492280 TMCO4Q5TGY1 634 aa12.49□□□□□ -0.41
HMGN1-220ENST00000492280 MSANTD2Q6P1R3 559 aa12.49□□□□□ -0.41
HMGN1-220ENST00000492280 LINGO4Q6UY18 593 aa12.49□□□□□ -0.41
HMGN1-220ENST00000492280 BEND5Q7L4P6 421 aa12.49□□□□□ -0.41
HMGN1-220ENST00000492280 ATP6V0D2Q8N8Y2 350 aa12.49□□□□□ -0.41
HMGN1-220ENST00000492280 WDR41Q9HAD4 459 aa12.49□□□□□ -0.41
HMGN1-220ENST00000492280 SMPD4Q9NXE4 827 aa12.49□□□□□ -0.41
HMGN1-220ENST00000492280 PCDHGB4Q9UN71 923 aa12.49□□□□□ -0.41
HMGN1-220ENST00000492280 PCDHGB5Q9Y5G0 923 aa12.49□□□□□ -0.41
HMGN1-220ENST00000492280 RGSL1A5PLK6 1076 aa12.49□□□□□ -0.41
HMGN1-220ENST00000492280 IPO13O94829 963 aaKnown RBP12.49□□□□□ -0.41
HMGN1-220ENST00000492280 ATP5BP06576 529 aaKnown RBP12.49□□□□□ -0.41
HMGN1-220ENST00000492280 LTA4HP09960 611 aaKnown RBP12.49□□□□□ -0.41
HMGN1-220ENST00000492280 TACR2P21452 398 aa12.49□□□□□ -0.41
HMGN1-220ENST00000492280 LEPRP48357 1165 aaKnown RBP12.49□□□□□ -0.41
HMGN1-220ENST00000492280 POU4F1Q01851 419 aa12.49□□□□□ -0.41
HMGN1-220ENST00000492280 SERINC3Q13530 473 aa12.49□□□□□ -0.41
HMGN1-220ENST00000492280 TRIP4Q15650 581 aaPredicted RBP12.49□□□□□ -0.41
HMGN1-220ENST00000492280 GEN1Q17RS7 908 aa12.49□□□□□ -0.41
HMGN1-220ENST00000492280 FOXB2Q5VYV0 432 aa12.49□□□□□ -0.41
HMGN1-220ENST00000492280 FUT10Q6P4F1 479 aa12.49□□□□□ -0.41
HMGN1-220ENST00000492280 DENND1CQ8IV53 801 aa12.49□□□□□ -0.41
HMGN1-220ENST00000492280 KYQ8NBH2 561 aa12.49□□□□□ -0.41
HMGN1-220ENST00000492280 RDH11Q8TC12 318 aa12.49□□□□□ -0.41
HMGN1-220ENST00000492280 C8orf48Q96LL4 319 aa12.49□□□□□ -0.41
HMGN1-220ENST00000492280 C3orf30Q96M34 536 aa12.49□□□□□ -0.41
HMGN1-220ENST00000492280 PCDHAC1Q9H158 963 aa12.49□□□□□ -0.41
HMGN1-220ENST00000492280 ATP13A1Q9HD20 1204 aa12.49□□□□□ -0.41
HMGN1-220ENST00000492280 BPIFA1Q9NP55 256 aa12.49□□□□□ -0.41
HMGN1-220ENST00000492280 IKZF3Q9UKT9 509 aa12.49□□□□□ -0.41
HMGN1-220ENST00000492280 VWA7Q9Y334 891 aa12.49□□□□□ -0.41
HMGN1-220ENST00000492280 ZFP37Q9Y6Q3 630 aaPredicted RBP12.49□□□□□ -0.41
HMGN1-220ENST00000492280 DOCK6Q96HP0 2047 aa12.49□□□□□ -0.41
HMGN1-220ENST00000492280 MYOCOSA0A1B0GUC4 107 aa12.48□□□□□ -0.41
HMGN1-220ENST00000492280 GOLGA8CPA6NN73 597 aa12.48□□□□□ -0.41
HMGN1-220ENST00000492280 DNAJA2O60884 412 aa12.48□□□□□ -0.41
HMGN1-220ENST00000492280 CAPN15O75808 1086 aa12.48□□□□□ -0.41
HMGN1-220ENST00000492280 GCKP35557 465 aa12.48□□□□□ -0.41
HMGN1-220ENST00000492280 HADHAP40939 763 aa12.48□□□□□ -0.41
HMGN1-220ENST00000492280 ECT2LQ008S8 904 aa12.48□□□□□ -0.41
HMGN1-220ENST00000492280 FLOT2Q14254 428 aa12.48□□□□□ -0.41
HMGN1-220ENST00000492280 MAP3K21Q5TCX8 1036 aa12.48□□□□□ -0.41
HMGN1-220ENST00000492280 CYHR1Q6ZMK1 362 aa12.48□□□□□ -0.41
HMGN1-220ENST00000492280 BHLHE22Q8NFJ8 381 aaPredicted RBP12.48□□□□□ -0.41
HMGN1-220ENST00000492280 C1orf74Q96LT6 269 aa12.48□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms