RNA–Protein interactions for RNA: ENST00000463007.5

HDAC4-208, Transcript of histone deacetylase 4, humanhuman

TSL 1 (best)

Gene HDAC4, Length 3,158 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-208ENST00000463007 CABYRO75952 493 aa12.49□□□□□ -0.41
HDAC4-208ENST00000463007 CTBSQ01459 385 aa12.49□□□□□ -0.41
HDAC4-208ENST00000463007 TRAF2Q12933 501 aa12.49□□□□□ -0.41
HDAC4-208ENST00000463007 PPP1R8Q12972 351 aaKnown RBP12.49□□□□□ -0.41
HDAC4-208ENST00000463007 CBX3Q13185 183 aa12.49□□□□□ -0.41
HDAC4-208ENST00000463007 RPS6KA2Q15349 733 aa12.49□□□□□ -0.41
HDAC4-208ENST00000463007 TICAM1Q8IUC6 712 aa12.49□□□□□ -0.41
HDAC4-208ENST00000463007 WNT8BQ93098 351 aa12.49□□□□□ -0.41
HDAC4-208ENST00000463007 HDAC11Q96DB2 347 aa12.49□□□□□ -0.41
HDAC4-208ENST00000463007 PGAP3Q96FM1 320 aaPredicted RBP12.49□□□□□ -0.41
HDAC4-208ENST00000463007 UPF3AQ9H1J1 476 aaKnown RBP12.49□□□□□ -0.41
HDAC4-208ENST00000463007 SMOXQ9NWM0 555 aa12.49□□□□□ -0.41
HDAC4-208ENST00000463007 BTRCQ9Y297 605 aa12.49□□□□□ -0.41
HDAC4-208ENST00000463007 HTTP42858 3142 aa12.49□□□□□ -0.41
HDAC4-208ENST00000463007 C17orf102A2RUQ5 167 aa12.49□□□□□ -0.41
HDAC4-208ENST00000463007 MYADML2A6NDP7 307 aa12.49□□□□□ -0.41
HDAC4-208ENST00000463007 H3BNH8 94 aa12.49□□□□□ -0.41
HDAC4-208ENST00000463007 ATE1O95260 518 aa12.49□□□□□ -0.41
HDAC4-208ENST00000463007 PCNAP12004 261 aa12.49□□□□□ -0.41
HDAC4-208ENST00000463007 ATP6V1B2P21281 511 aa12.49□□□□□ -0.41
HDAC4-208ENST00000463007 NOS2P35228 1153 aa12.49□□□□□ -0.41
HDAC4-208ENST00000463007 AFF1P51825 1210 aaKnown RBP12.49□□□□□ -0.41
HDAC4-208ENST00000463007 NKX3-2P78367 333 aa12.49□□□□□ -0.41
HDAC4-208ENST00000463007 CACNB2Q08289 660 aaPredicted RBP12.49□□□□□ -0.41
HDAC4-208ENST00000463007 PLA2G4EQ3MJ16 856 aa12.49□□□□□ -0.41
HDAC4-208ENST00000463007 TSTD2Q5T7W7 516 aa12.49□□□□□ -0.41
HDAC4-208ENST00000463007 WSCD1Q658N2 575 aa12.49□□□□□ -0.41
HDAC4-208ENST00000463007 PATL1Q86TB9 770 aaKnown RBP12.49□□□□□ -0.41
HDAC4-208ENST00000463007 C3orf58Q8NDZ4 430 aa12.49□□□□□ -0.41
HDAC4-208ENST00000463007 TRPV1Q8NER1 839 aa12.49□□□□□ -0.41
HDAC4-208ENST00000463007 ASB9Q96DX5 294 aa12.49□□□□□ -0.41
HDAC4-208ENST00000463007 FSD1LQ9BXM9 530 aa12.49□□□□□ -0.41
HDAC4-208ENST00000463007 CLK4Q9HAZ1 481 aaKnown RBP12.49□□□□□ -0.41
HDAC4-208ENST00000463007 SPAG4Q9NPE6 437 aa12.49□□□□□ -0.41
HDAC4-208ENST00000463007 TIMMDC1Q9NPL8 285 aa12.49□□□□□ -0.41
HDAC4-208ENST00000463007 SELENONQ9NZV5 590 aa12.49□□□□□ -0.41
HDAC4-208ENST00000463007 OR12D3Q9UGF7 316 aa12.49□□□□□ -0.41
HDAC4-208ENST00000463007 CROTQ9UKG9 612 aa12.49□□□□□ -0.41
HDAC4-208ENST00000463007 FRMPD3Q5JV73 1810 aa12.49□□□□□ -0.41
HDAC4-208ENST00000463007 ZFC3H1O60293 1989 aaKnown RBP12.49□□□□□ -0.41
HDAC4-208ENST00000463007 OR51F1A6NGY5 319 aa12.49□□□□□ -0.41
HDAC4-208ENST00000463007 HUS1O60921 280 aa12.49□□□□□ -0.41
HDAC4-208ENST00000463007 SRP72O76094 671 aaKnown RBP12.49□□□□□ -0.41
HDAC4-208ENST00000463007 ZNF23P17027 643 aa12.49□□□□□ -0.41
HDAC4-208ENST00000463007 SLC1A2P43004 574 aa12.49□□□□□ -0.41
HDAC4-208ENST00000463007 MAXP61244 160 aa12.49□□□□□ -0.41
HDAC4-208ENST00000463007 GNA12Q03113 381 aa12.49□□□□□ -0.41
HDAC4-208ENST00000463007 GPRIN1Q7Z2K8 1008 aa12.49□□□□□ -0.41
HDAC4-208ENST00000463007 CLEC14AQ86T13 490 aa12.49□□□□□ -0.41
HDAC4-208ENST00000463007 ZNF554Q86TJ5 538 aa12.49□□□□□ -0.41
HDAC4-208ENST00000463007 TMEM151AQ8N4L1 468 aa12.49□□□□□ -0.41
HDAC4-208ENST00000463007 ISOC1Q96CN7 298 aa12.49□□□□□ -0.41
HDAC4-208ENST00000463007 SLC9A7Q96T83 725 aa12.49□□□□□ -0.41
HDAC4-208ENST00000463007 MTG1Q9BT17 334 aaPredicted RBP12.49□□□□□ -0.41
HDAC4-208ENST00000463007 EFHD1Q9BUP0 239 aa12.49□□□□□ -0.41
HDAC4-208ENST00000463007 MUC3BQ9H195 1237 aa12.49□□□□□ -0.41
HDAC4-208ENST00000463007 EPB41L1Q9H4G0 881 aa12.49□□□□□ -0.41
HDAC4-208ENST00000463007 OAZ3Q9UMX2 235 aa12.49□□□□□ -0.41
HDAC4-208ENST00000463007 MAN1A2O60476 641 aa12.48□□□□□ -0.41
HDAC4-208ENST00000463007 SIX3O95343 332 aaPredicted RBP12.48□□□□□ -0.41
HDAC4-208ENST00000463007 ZNF182P17025 639 aaPredicted RBP12.48□□□□□ -0.41
HDAC4-208ENST00000463007 CTGFP29279 349 aa12.48□□□□□ -0.41
HDAC4-208ENST00000463007 ADRA1BP35368 520 aa12.48□□□□□ -0.41
HDAC4-208ENST00000463007 APLP1P51693 650 aa12.48□□□□□ -0.41
HDAC4-208ENST00000463007 RAB10P61026 200 aa12.48□□□□□ -0.41
HDAC4-208ENST00000463007 ECT2LQ008S8 904 aa12.48□□□□□ -0.41
HDAC4-208ENST00000463007 RHDQ02161 417 aa12.48□□□□□ -0.41
HDAC4-208ENST00000463007 SULT2A1Q06520 285 aa12.48□□□□□ -0.41
HDAC4-208ENST00000463007 MGAT3Q09327 533 aa12.48□□□□□ -0.41
HDAC4-208ENST00000463007 STX5Q13190 355 aa12.48□□□□□ -0.41
HDAC4-208ENST00000463007 SNX29P2Q8IUI4 249 aa12.48□□□□□ -0.41
HDAC4-208ENST00000463007 HMGCLL1Q8TB92 370 aa12.48□□□□□ -0.41
HDAC4-208ENST00000463007 SPPL2BQ8TCT7 592 aa12.48□□□□□ -0.41
HDAC4-208ENST00000463007 NTAN1Q96AB6 310 aa12.48□□□□□ -0.41
HDAC4-208ENST00000463007 PBXIP1Q96AQ6 731 aa12.48□□□□□ -0.41
HDAC4-208ENST00000463007 VPS50Q96JG6 964 aa12.48□□□□□ -0.41
HDAC4-208ENST00000463007 KCNA7Q96RP8 456 aa12.48□□□□□ -0.41
HDAC4-208ENST00000463007 SMOQ99835 787 aa12.48□□□□□ -0.41
HDAC4-208ENST00000463007 KATNAL1Q9BW62 490 aa12.48□□□□□ -0.41
HDAC4-208ENST00000463007 OSBPL11Q9BXB4 747 aa12.48□□□□□ -0.41
HDAC4-208ENST00000463007 TKTL2Q9H0I9 626 aa12.48□□□□□ -0.41
HDAC4-208ENST00000463007 RHOJQ9H4E5 214 aa12.48□□□□□ -0.41
HDAC4-208ENST00000463007 PNPLA3Q9NST1 481 aa12.48□□□□□ -0.41
HDAC4-208ENST00000463007 C1orf232A0A0U1RR37 186 aa12.48□□□□□ -0.41
HDAC4-208ENST00000463007 BAIAP3O94812 1187 aa12.48□□□□□ -0.41
HDAC4-208ENST00000463007 CELF2O95319 508 aaKnown RBP12.48□□□□□ -0.41
HDAC4-208ENST00000463007 SNRPB2P08579 225 aaKnown RBP12.48□□□□□ -0.41
HDAC4-208ENST00000463007 OXTRP30559 389 aa12.48□□□□□ -0.41
HDAC4-208ENST00000463007 HSPA13P48723 471 aa12.48□□□□□ -0.41
HDAC4-208ENST00000463007 PMS2P3Q13401 168 aa12.48□□□□□ -0.41
HDAC4-208ENST00000463007 EIF4EBP2Q13542 120 aaPredicted RBP12.48□□□□□ -0.41
HDAC4-208ENST00000463007 SETD3Q86TU7 594 aaPredicted RBP12.48□□□□□ -0.41
HDAC4-208ENST00000463007 CUZD1Q86UP6 607 aa12.48□□□□□ -0.41
HDAC4-208ENST00000463007 PIM3Q86V86 326 aa12.48□□□□□ -0.41
HDAC4-208ENST00000463007 RASAL3Q86YV0 1011 aa12.48□□□□□ -0.41
HDAC4-208ENST00000463007 ERI1Q8IV48 349 aaKnown RBP12.48□□□□□ -0.41
HDAC4-208ENST00000463007 PDZD8Q8NEN9 1154 aa12.48□□□□□ -0.41
HDAC4-208ENST00000463007 FNDC8Q8TC99 324 aa12.48□□□□□ -0.41
HDAC4-208ENST00000463007 DLG3Q92796 817 aa12.48□□□□□ -0.41
HDAC4-208ENST00000463007 C3orf30Q96M34 536 aa12.48□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 57.9 ms