RNA–Protein interactions for RNA: ENST00000460593.1

CPSF3-202, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 1 (best) BASIC

Gene CPSF3, Length 3,157 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-202ENST00000460593 SMARCAD1Q9H4L7 1026 aa11.77□□□□□ -0.53
CPSF3-202ENST00000460593 ARMC1Q9NVT9 282 aa11.77□□□□□ -0.53
CPSF3-202ENST00000460593 SMPD3Q9NY59 655 aaPredicted RBP11.77□□□□□ -0.53
CPSF3-202ENST00000460593 FER1L6Q2WGJ9 1857 aa11.76□□□□□ -0.53
CPSF3-202ENST00000460593 ZNF831Q5JPB2 1677 aa11.76□□□□□ -0.53
CPSF3-202ENST00000460593 LRRC14BA6NHZ5 514 aa11.76□□□□□ -0.53
CPSF3-202ENST00000460593 ADSLP30566 484 aaPredicted RBP11.76□□□□□ -0.53
CPSF3-202ENST00000460593 PSMD8P48556 350 aa11.76□□□□□ -0.53
CPSF3-202ENST00000460593 IST1P53990 364 aa11.76□□□□□ -0.53
CPSF3-202ENST00000460593 TMEM132BQ14DG7 1078 aa11.76□□□□□ -0.53
CPSF3-202ENST00000460593 THOC7Q6I9Y2 204 aaKnown RBP11.76□□□□□ -0.53
CPSF3-202ENST00000460593 SULF1Q8IWU6 871 aa11.76□□□□□ -0.53
CPSF3-202ENST00000460593 DEFB106AQ8N104 65 aa11.76□□□□□ -0.53
CPSF3-202ENST00000460593 DNERQ8NFT8 737 aa11.76□□□□□ -0.53
CPSF3-202ENST00000460593 ALOXE3Q9BYJ1 711 aa11.76□□□□□ -0.53
CPSF3-202ENST00000460593 MRPL46Q9H2W6 279 aaKnown RBP11.76□□□□□ -0.53
CPSF3-202ENST00000460593 PKD2L2Q9NZM6 624 aa11.76□□□□□ -0.53
CPSF3-202ENST00000460593 A0A0J9YYE9 177 aa11.76□□□□□ -0.53
CPSF3-202ENST00000460593 SLCO1B7G3V0H7 640 aa11.76□□□□□ -0.53
CPSF3-202ENST00000460593 H3BMM5 538 aa11.76□□□□□ -0.53
CPSF3-202ENST00000460593 HUS1O60921 280 aa11.76□□□□□ -0.53
CPSF3-202ENST00000460593 MAFO75444 373 aaPredicted RBP11.76□□□□□ -0.53
CPSF3-202ENST00000460593 YBX3P16989 372 aaKnown RBP eCLIP11.76□□□□□ -0.534e-6■■□□□ 13.4
CPSF3-202ENST00000460593 FSHRP23945 695 aa11.76□□□□□ -0.53
CPSF3-202ENST00000460593 PRKAA2P54646 552 aa11.76□□□□□ -0.53
CPSF3-202ENST00000460593 SLC10A6Q3KNW5 377 aa11.76□□□□□ -0.53
CPSF3-202ENST00000460593 INTS11Q5TA45 600 aaKnown RBP11.76□□□□□ -0.53
CPSF3-202ENST00000460593 PRAMEF18Q5VWM3 479 aa11.76□□□□□ -0.53
CPSF3-202ENST00000460593 ESRP1Q6NXG1 681 aaKnown RBP11.76□□□□□ -0.53
CPSF3-202ENST00000460593 OR6B3Q8NGW1 331 aa11.76□□□□□ -0.53
CPSF3-202ENST00000460593 SH3RF2Q8TEC5 729 aa11.76□□□□□ -0.53
CPSF3-202ENST00000460593 SLC35F5Q8WV83 523 aa11.76□□□□□ -0.53
CPSF3-202ENST00000460593 VPS33AQ96AX1 596 aa11.76□□□□□ -0.53
CPSF3-202ENST00000460593 CENPNQ96H22 339 aaPredicted RBP11.76□□□□□ -0.53
CPSF3-202ENST00000460593 CELF6Q96J87 481 aaKnown RBP11.76□□□□□ -0.53
CPSF3-202ENST00000460593 FEM1CQ96JP0 617 aa11.76□□□□□ -0.53
CPSF3-202ENST00000460593 C9orf16Q9BUW7 83 aa11.76□□□□□ -0.53
CPSF3-202ENST00000460593 C1orf50Q9BV19 199 aa11.76□□□□□ -0.53
CPSF3-202ENST00000460593 ING2Q9H160 280 aa11.76□□□□□ -0.53
CPSF3-202ENST00000460593 GBA3Q9H227 469 aa11.76□□□□□ -0.53
CPSF3-202ENST00000460593 CCDC68Q9H2F9 335 aa11.76□□□□□ -0.53
CPSF3-202ENST00000460593 CDHR5Q9HBB8 845 aa11.76□□□□□ -0.53
CPSF3-202ENST00000460593 EIF2B3Q9NR50 452 aaKnown RBP11.76□□□□□ -0.53
CPSF3-202ENST00000460593 PSME2Q9UL46 239 aa11.76□□□□□ -0.53
CPSF3-202ENST00000460593 CENPFP49454 3210 aa11.76□□□□□ -0.53
CPSF3-202ENST00000460593 TRIM64A6NGJ6 449 aa11.75□□□□□ -0.53
CPSF3-202ENST00000460593 H0Y858 1186 aa11.75□□□□□ -0.53
CPSF3-202ENST00000460593 KPNA4O00629 521 aaPredicted RBP11.75□□□□□ -0.53
CPSF3-202ENST00000460593 MAFGO15525 162 aa11.75□□□□□ -0.53
CPSF3-202ENST00000460593 BCAS1O75363 584 aaPredicted RBP11.75□□□□□ -0.53
CPSF3-202ENST00000460593 RASAL1O95294 804 aa11.75□□□□□ -0.53
CPSF3-202ENST00000460593 AP2A1O95782 977 aa11.75□□□□□ -0.53
CPSF3-202ENST00000460593 CA8P35219 290 aa11.75□□□□□ -0.53
CPSF3-202ENST00000460593 PCYT1AP49585 367 aa11.75□□□□□ -0.53
CPSF3-202ENST00000460593 EFNA5P52803 228 aa11.75□□□□□ -0.53
CPSF3-202ENST00000460593 TSPY1Q01534 308 aa11.75□□□□□ -0.53
CPSF3-202ENST00000460593 GRB7Q14451 532 aa11.75□□□□□ -0.53
CPSF3-202ENST00000460593 FAM83EQ2M2I3 478 aa11.75□□□□□ -0.53
CPSF3-202ENST00000460593 UGT3A2Q3SY77 523 aa11.75□□□□□ -0.53
CPSF3-202ENST00000460593 TIGD2Q4W5G0 525 aa11.75□□□□□ -0.53
CPSF3-202ENST00000460593 DEPDC1Q5TB30 811 aa11.75□□□□□ -0.53
CPSF3-202ENST00000460593 TMEM236Q5W0B7 351 aa11.75□□□□□ -0.53
CPSF3-202ENST00000460593 RNF19BQ6ZMZ0 732 aa11.75□□□□□ -0.53
CPSF3-202ENST00000460593 R3HCC1LQ7Z5L2 792 aaKnown RBP11.75□□□□□ -0.53
CPSF3-202ENST00000460593 ZNF354CQ86Y25 554 aa11.75□□□□□ -0.53
CPSF3-202ENST00000460593 EXOC8Q8IYI6 725 aa11.75□□□□□ -0.53
CPSF3-202ENST00000460593 NPWQ8N729 165 aa11.75□□□□□ -0.53
CPSF3-202ENST00000460593 SLC25A23Q9BV35 468 aa11.75□□□□□ -0.53
CPSF3-202ENST00000460593 FUNDC2Q9BWH2 189 aa11.75□□□□□ -0.53
CPSF3-202ENST00000460593 NIFKQ9BYG3 293 aaKnown RBP11.75□□□□□ -0.53
CPSF3-202ENST00000460593 SNX25Q9H3E2 840 aa11.75□□□□□ -0.53
CPSF3-202ENST00000460593 MARCH7Q9H992 704 aa11.75□□□□□ -0.53
CPSF3-202ENST00000460593 TLR9Q9NR96 1032 aa11.75□□□□□ -0.53
CPSF3-202ENST00000460593 NRBP2Q9NSY0 501 aa11.75□□□□□ -0.53
CPSF3-202ENST00000460593 SLAMF8Q9P0V8 285 aa11.75□□□□□ -0.53
CPSF3-202ENST00000460593 AASSQ9UDR5 926 aa11.75□□□□□ -0.53
CPSF3-202ENST00000460593 SARDHQ9UL12 918 aa11.75□□□□□ -0.53
CPSF3-202ENST00000460593 ANKRD31Q8N7Z5 1873 aa11.75□□□□□ -0.53
CPSF3-202ENST00000460593 TANC1Q9C0D5 1861 aa11.75□□□□□ -0.53
CPSF3-202ENST00000460593 PTGES3LE9PB15 166 aa11.75□□□□□ -0.53
CPSF3-202ENST00000460593 GMNNO75496 209 aa11.75□□□□□ -0.53
CPSF3-202ENST00000460593 MT-CYBP00156 380 aaPredicted RBP11.75□□□□□ -0.53
CPSF3-202ENST00000460593 TCF3P15923 654 aa11.75□□□□□ -0.53
CPSF3-202ENST00000460593 GSSP48637 474 aa11.75□□□□□ -0.53
CPSF3-202ENST00000460593 CXCR3P49682 368 aa11.75□□□□□ -0.53
CPSF3-202ENST00000460593 HLCSP50747 726 aa11.75□□□□□ -0.53
CPSF3-202ENST00000460593 SLC13A2Q13183 592 aa11.75□□□□□ -0.53
CPSF3-202ENST00000460593 SELENBP1Q13228 472 aa11.75□□□□□ -0.53
CPSF3-202ENST00000460593 CRTC3Q6UUV7 619 aa11.75□□□□□ -0.53
CPSF3-202ENST00000460593 C14orf80Q86SX3 495 aa11.75□□□□□ -0.53
CPSF3-202ENST00000460593 HS3ST5Q8IZT8 346 aa11.75□□□□□ -0.53
CPSF3-202ENST00000460593 CAPSLQ8WWF8 208 aa11.75□□□□□ -0.53
CPSF3-202ENST00000460593 HTRA1Q92743 480 aa11.75□□□□□ -0.53
CPSF3-202ENST00000460593 TOP1MTQ969P6 601 aa11.75□□□□□ -0.53
CPSF3-202ENST00000460593 CCDC138Q96M89 665 aa11.75□□□□□ -0.53
CPSF3-202ENST00000460593 KCNA7Q96RP8 456 aa11.75□□□□□ -0.53
CPSF3-202ENST00000460593 RHOJQ9H4E5 214 aa11.75□□□□□ -0.53
CPSF3-202ENST00000460593 VRTNQ9H8Y1 702 aa11.75□□□□□ -0.53
CPSF3-202ENST00000460593 MID2Q9UJV3 735 aa11.75□□□□□ -0.53
CPSF3-202ENST00000460593 SLC30A1Q9Y6M5 507 aa11.75□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms