RNA–Protein interactions for RNA: ENST00000409435.5

SCN9A-202, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 5,967 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-202ENST00000409435 MLIPQ5VWP3 458 aa7.34□□□□□ -1.24
SCN9A-202ENST00000409435 TPCN2Q8NHX9 752 aa7.34□□□□□ -1.24
SCN9A-202ENST00000409435 JSRP1Q96MG2 331 aaPredicted RBP7.34□□□□□ -1.24
SCN9A-202ENST00000409435 BBS4Q96RK4 519 aa7.34□□□□□ -1.24
SCN9A-202ENST00000409435 GORASP1Q9BQQ3 440 aa7.34□□□□□ -1.24
SCN9A-202ENST00000409435 ING4Q9UNL4 249 aa7.34□□□□□ -1.24
SCN9A-202ENST00000409435 DRG1Q9Y295 367 aaKnown RBP7.34□□□□□ -1.24
SCN9A-202ENST00000409435 RPH3AQ9Y2J0 694 aaPredicted RBP7.34□□□□□ -1.24
SCN9A-202ENST00000409435 A0A1B0GVM2 712 aa7.33□□□□□ -1.24
SCN9A-202ENST00000409435 TCAF2A6NFQ2 919 aa7.33□□□□□ -1.24
SCN9A-202ENST00000409435 CCT8L1PA6NM43 557 aa7.33□□□□□ -1.24
SCN9A-202ENST00000409435 ANKRD63C9JTQ0 380 aa7.33□□□□□ -1.24
SCN9A-202ENST00000409435 CNTN5O94779 1100 aa7.33□□□□□ -1.24
SCN9A-202ENST00000409435 ZCCHC18P0CG32 403 aa7.33□□□□□ -1.24
SCN9A-202ENST00000409435 CDH4P55283 916 aa7.33□□□□□ -1.24
SCN9A-202ENST00000409435 STX5Q13190 355 aa7.33□□□□□ -1.24
SCN9A-202ENST00000409435 OASLQ15646 514 aaKnown RBP7.33□□□□□ -1.24
SCN9A-202ENST00000409435 BRMS1LQ5PSV4 323 aa7.33□□□□□ -1.24
SCN9A-202ENST00000409435 AGMOQ6ZNB7 445 aa7.33□□□□□ -1.24
SCN9A-202ENST00000409435 DUSP23Q9BVJ7 150 aa7.33□□□□□ -1.24
SCN9A-202ENST00000409435 SMG9Q9H0W8 520 aaKnown RBP7.33□□□□□ -1.24
SCN9A-202ENST00000409435 WDR26Q9H7D7 661 aa7.33□□□□□ -1.24
SCN9A-202ENST00000409435 USP29Q9HBJ7 922 aa7.33□□□□□ -1.24
SCN9A-202ENST00000409435 ERVK-5Q9HDB9 667 aa7.33□□□□□ -1.24
SCN9A-202ENST00000409435 KCNK4Q9NYG8 393 aa7.33□□□□□ -1.24
SCN9A-202ENST00000409435 RABL2AQ9UBK7 228 aaPredicted RBP7.33□□□□□ -1.24
SCN9A-202ENST00000409435 RAD51BO15315 384 aa7.33□□□□□ -1.24
SCN9A-202ENST00000409435 CATP04040 527 aaKnown RBP7.33□□□□□ -1.24
SCN9A-202ENST00000409435 ITGB1P05556 798 aa7.33□□□□□ -1.24
SCN9A-202ENST00000409435 FDFT1P37268 417 aa7.33□□□□□ -1.24
SCN9A-202ENST00000409435 ITGA8P53708 1063 aa7.33□□□□□ -1.24
SCN9A-202ENST00000409435 CNTN1Q12860 1018 aa7.33□□□□□ -1.24
SCN9A-202ENST00000409435 GPR17Q13304 367 aa7.33□□□□□ -1.24
SCN9A-202ENST00000409435 DGUOKQ16854 277 aa7.33□□□□□ -1.24
SCN9A-202ENST00000409435 LYPLAL1Q5VWZ2 237 aa7.33□□□□□ -1.24
SCN9A-202ENST00000409435 PGBD2Q6P3X8 592 aa7.33□□□□□ -1.24
SCN9A-202ENST00000409435 NCSTNQ92542 709 aa7.33□□□□□ -1.24
SCN9A-202ENST00000409435 TATDN2Q93075 761 aa7.33□□□□□ -1.24
SCN9A-202ENST00000409435 MRPL45Q9BRJ2 306 aaKnown RBP7.33□□□□□ -1.24
SCN9A-202ENST00000409435 MYLK2Q9H1R3 596 aa7.33□□□□□ -1.24
SCN9A-202ENST00000409435 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP7.33□□□□□ -1.24
SCN9A-202ENST00000409435 DUOX1Q9NRD9 1551 aa7.33□□□□□ -1.24
SCN9A-202ENST00000409435 KLHL2O95198 593 aa7.33□□□□□ -1.24
SCN9A-202ENST00000409435 STARP49675 285 aa7.33□□□□□ -1.24
SCN9A-202ENST00000409435 CLK2P49760 499 aaKnown RBP7.33□□□□□ -1.24
SCN9A-202ENST00000409435 OTUD4Q01804 1114 aaKnown RBP7.33□□□□□ -1.24
SCN9A-202ENST00000409435 ZNHIT3Q15649 155 aaPredicted RBP7.33□□□□□ -1.24
SCN9A-202ENST00000409435 SARM1Q6SZW1 724 aa7.33□□□□□ -1.24
SCN9A-202ENST00000409435 RASSF6Q6ZTQ3 369 aa7.33□□□□□ -1.24
SCN9A-202ENST00000409435 ADHFE1Q8IWW8 467 aa7.33□□□□□ -1.24
SCN9A-202ENST00000409435 KIRREL3Q8IZU9 778 aa7.33□□□□□ -1.24
SCN9A-202ENST00000409435 ZCCHC9Q8N567 271 aaKnown RBP7.33□□□□□ -1.24
SCN9A-202ENST00000409435 CYB5D2Q8WUJ1 264 aa7.33□□□□□ -1.24
SCN9A-202ENST00000409435 REPS1Q96D71 796 aa7.33□□□□□ -1.24
SCN9A-202ENST00000409435 ZC3H10Q96K80 434 aaKnown RBP7.33□□□□□ -1.24
SCN9A-202ENST00000409435 MRPL1Q9BYD6 325 aaKnown RBP7.33□□□□□ -1.24
SCN9A-202ENST00000409435 RHOBTB2Q9BYZ6 727 aa7.33□□□□□ -1.24
SCN9A-202ENST00000409435 RNF39Q9H2S5 420 aa7.33□□□□□ -1.24
SCN9A-202ENST00000409435 SGK2Q9HBY8 427 aa7.33□□□□□ -1.24
SCN9A-202ENST00000409435 SAYSD1Q9NPB0 183 aa7.33□□□□□ -1.24
SCN9A-202ENST00000409435 ACSS2Q9NR19 701 aa7.33□□□□□ -1.24
SCN9A-202ENST00000409435 OR12D3Q9UGF7 316 aa7.33□□□□□ -1.24
SCN9A-202ENST00000409435 HCFC2Q9Y5Z7 792 aa7.33□□□□□ -1.24
SCN9A-202ENST00000409435 TRIM43BA6NCK2 446 aa7.33□□□□□ -1.24
SCN9A-202ENST00000409435 TSPAN4O14817 238 aa7.33□□□□□ -1.24
SCN9A-202ENST00000409435 SCAMP1O15126 338 aa7.33□□□□□ -1.24
SCN9A-202ENST00000409435 MUSKO15146 869 aa7.33□□□□□ -1.24
SCN9A-202ENST00000409435 CNMDO75829 334 aa7.33□□□□□ -1.24
SCN9A-202ENST00000409435 SEMA4FO95754 770 aa7.33□□□□□ -1.24
SCN9A-202ENST00000409435 VIPR2P41587 438 aa7.33□□□□□ -1.24
SCN9A-202ENST00000409435 PER3P56645 1201 aa7.33□□□□□ -1.24
SCN9A-202ENST00000409435 RRP1BQ14684 758 aaKnown RBP7.33□□□□□ -1.24
SCN9A-202ENST00000409435 OCLNQ16625 522 aa7.33□□□□□ -1.24
SCN9A-202ENST00000409435 PPP1R15BQ5SWA1 713 aa7.33□□□□□ -1.24
SCN9A-202ENST00000409435 C3orf20Q8ND61 904 aa7.33□□□□□ -1.24
SCN9A-202ENST00000409435 TRIM43Q96BQ3 446 aaPredicted RBP7.33□□□□□ -1.24
SCN9A-202ENST00000409435 SEMA4AQ9H3S1 761 aa7.33□□□□□ -1.24
SCN9A-202ENST00000409435 ARMC7Q9H6L4 198 aa7.33□□□□□ -1.24
SCN9A-202ENST00000409435 SERTAD3Q9UJW9 196 aa7.33□□□□□ -1.24
SCN9A-202ENST00000409435 BTBD3Q9Y2F9 522 aa7.33□□□□□ -1.24
SCN9A-202ENST00000409435 FAM32AQ9Y421 112 aaKnown RBP7.33□□□□□ -1.24
SCN9A-202ENST00000409435 LGALS16A8MUM7 142 aa7.33□□□□□ -1.24
SCN9A-202ENST00000409435 FTCDO95954 541 aa7.33□□□□□ -1.24
SCN9A-202ENST00000409435 APRTP07741 180 aa7.33□□□□□ -1.24
SCN9A-202ENST00000409435 TGM2P21980 687 aa7.33□□□□□ -1.24
SCN9A-202ENST00000409435 RBL2Q08999 1139 aa7.33□□□□□ -1.24
SCN9A-202ENST00000409435 CDC16Q13042 620 aa7.33□□□□□ -1.24
SCN9A-202ENST00000409435 MPP2Q14168 576 aa7.33□□□□□ -1.24
SCN9A-202ENST00000409435 DLG2Q15700 870 aa7.33□□□□□ -1.24
SCN9A-202ENST00000409435 CLEC16AQ2KHT3 1053 aa7.33□□□□□ -1.24
SCN9A-202ENST00000409435 ALYREFQ86V81 257 aaKnown RBP7.33□□□□□ -1.24
SCN9A-202ENST00000409435 TMPRSS6Q8IU80 811 aa7.33□□□□□ -1.24
SCN9A-202ENST00000409435 DDIASQ8IXT1 998 aa7.33□□□□□ -1.24
SCN9A-202ENST00000409435 CCNYL1Q8N7R7 359 aa7.33□□□□□ -1.24
SCN9A-202ENST00000409435 TEX19Q8NA77 164 aa7.33□□□□□ -1.24
SCN9A-202ENST00000409435 PHC3Q8NDX5 983 aa7.33□□□□□ -1.24
SCN9A-202ENST00000409435 LCN9Q8WX39 176 aa7.33□□□□□ -1.24
SCN9A-202ENST00000409435 MYO19Q96H55 970 aa7.33□□□□□ -1.24
SCN9A-202ENST00000409435 NDC1Q9BTX1 674 aa7.33□□□□□ -1.24
SCN9A-202ENST00000409435 C1orf50Q9BV19 199 aa7.33□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms