RNA–Protein interactions for RNA: ENST00000357409.9

VPS13A-202, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 9,967 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-202ENST00000357409 DNAJC9Q8WXX5 260 aa7.38□□□□□ -1.23
VPS13A-202ENST00000357409 C12orf66Q96MD2 445 aa7.38□□□□□ -1.23
VPS13A-202ENST00000357409 DUSP9Q99956 384 aaKnown RBP7.38□□□□□ -1.23
VPS13A-202ENST00000357409 ERVK-11Q9UQG0 969 aa7.38□□□□□ -1.23
VPS13A-202ENST00000357409 POLR3HQ9Y535 204 aaPredicted RBP7.38□□□□□ -1.23
VPS13A-202ENST00000357409 CDC42BPGQ6DT37 1551 aa7.38□□□□□ -1.23
VPS13A-202ENST00000357409 A0A0J9YVX5 310 aa7.38□□□□□ -1.23
VPS13A-202ENST00000357409 MYBPHLA2RUH7 354 aa7.38□□□□□ -1.23
VPS13A-202ENST00000357409 OR10H3O60404 316 aa7.38□□□□□ -1.23
VPS13A-202ENST00000357409 KPNA6O60684 536 aa7.38□□□□□ -1.23
VPS13A-202ENST00000357409 OR5F1O95221 314 aa7.38□□□□□ -1.23
VPS13A-202ENST00000357409 MMP3P08254 477 aa7.38□□□□□ -1.23
VPS13A-202ENST00000357409 CCNYL3P0C7X3 344 aa7.38□□□□□ -1.23
VPS13A-202ENST00000357409 KCNA5P22460 613 aa7.38□□□□□ -1.23
VPS13A-202ENST00000357409 HTR1BP28222 390 aa7.38□□□□□ -1.23
VPS13A-202ENST00000357409 MAPKAPK2P49137 400 aa7.38□□□□□ -1.23
VPS13A-202ENST00000357409 CDH17Q12864 832 aa7.38□□□□□ -1.23
VPS13A-202ENST00000357409 DNAL1Q4LDG9 190 aa7.38□□□□□ -1.23
VPS13A-202ENST00000357409 OLFML2AQ68BL7 652 aa7.38□□□□□ -1.23
VPS13A-202ENST00000357409 ESRP1Q6NXG1 681 aaKnown RBP7.38□□□□□ -1.23
VPS13A-202ENST00000357409 CLVS1Q8IUQ0 354 aaPredicted RBP7.38□□□□□ -1.23
VPS13A-202ENST00000357409 ANKFN1Q8N957 763 aa7.38□□□□□ -1.23
VPS13A-202ENST00000357409 PDCD10Q9BUL8 212 aa7.38□□□□□ -1.23
VPS13A-202ENST00000357409 PLA2G12BQ9BX93 195 aa7.38□□□□□ -1.23
VPS13A-202ENST00000357409 SUCOQ9UBS9 1254 aaKnown RBP7.38□□□□□ -1.23
VPS13A-202ENST00000357409 OR51F1A6NGY5 319 aa7.38□□□□□ -1.23
VPS13A-202ENST00000357409 TRPC5OSA6NMA1 111 aa7.38□□□□□ -1.23
VPS13A-202ENST00000357409 PAGE1O75459 146 aa7.38□□□□□ -1.23
VPS13A-202ENST00000357409 CDC123O75794 336 aaPredicted RBP7.38□□□□□ -1.23
VPS13A-202ENST00000357409 ERBB2P04626 1255 aa7.38□□□□□ -1.23
VPS13A-202ENST00000357409 DBTP11182 482 aaKnown RBP7.38□□□□□ -1.23
VPS13A-202ENST00000357409 EPHA3P29320 983 aa7.38□□□□□ -1.23
VPS13A-202ENST00000357409 NCF4Q15080 339 aa7.38□□□□□ -1.23
VPS13A-202ENST00000357409 PDK2Q15119 407 aa7.38□□□□□ -1.23
VPS13A-202ENST00000357409 SLC30A6Q6NXT4 461 aa7.38□□□□□ -1.23
VPS13A-202ENST00000357409 RPS27LQ71UM5 84 aaKnown RBP7.38□□□□□ -1.23
VPS13A-202ENST00000357409 P4HA3Q7Z4N8 544 aa7.38□□□□□ -1.23
VPS13A-202ENST00000357409 TEX19Q8NA77 164 aa7.38□□□□□ -1.23
VPS13A-202ENST00000357409 CHST4Q8NCG5 386 aa7.38□□□□□ -1.23
VPS13A-202ENST00000357409 DCBLD2Q96PD2 775 aa7.38□□□□□ -1.23
VPS13A-202ENST00000357409 VPS33BQ9H267 617 aa7.38□□□□□ -1.23
VPS13A-202ENST00000357409 NMRAL1Q9HBL8 299 aa7.38□□□□□ -1.23
VPS13A-202ENST00000357409 MCUBQ9NWR8 336 aa7.38□□□□□ -1.23
VPS13A-202ENST00000357409 COMMD8Q9NX08 183 aa7.38□□□□□ -1.23
VPS13A-202ENST00000357409 AHSPQ9NZD4 102 aa7.38□□□□□ -1.23
VPS13A-202ENST00000357409 C8AP07357 584 aa7.38□□□□□ -1.23
VPS13A-202ENST00000357409 ITGB5P18084 799 aa7.38□□□□□ -1.23
VPS13A-202ENST00000357409 IGFALSP35858 605 aa7.38□□□□□ -1.23
VPS13A-202ENST00000357409 PPIL2Q13356 520 aa7.38□□□□□ -1.23
VPS13A-202ENST00000357409 NAE1Q13564 534 aa7.38□□□□□ -1.23
VPS13A-202ENST00000357409 HYIQ5T013 277 aa7.38□□□□□ -1.23
VPS13A-202ENST00000357409 SNX30Q5VWJ9 437 aa7.38□□□□□ -1.23
VPS13A-202ENST00000357409 USP53Q70EK8 1073 aa7.38□□□□□ -1.23
VPS13A-202ENST00000357409 ZNF433Q8N7K0 673 aaPredicted RBP7.38□□□□□ -1.23
VPS13A-202ENST00000357409 KLRG1Q96E93 195 aa7.38□□□□□ -1.23
VPS13A-202ENST00000357409 SH3GL3Q99963 347 aa7.38□□□□□ -1.23
VPS13A-202ENST00000357409 OR51V1Q9H2C8 321 aa7.38□□□□□ -1.23
VPS13A-202ENST00000357409 CXXC1Q9P0U4 656 aaPredicted RBP7.38□□□□□ -1.23
VPS13A-202ENST00000357409 AGO1Q9UL18 857 aaKnown RBP7.38□□□□□ -1.23
VPS13A-202ENST00000357409 MRASO14807 208 aa7.37□□□□□ -1.23
VPS13A-202ENST00000357409 ATP5HO75947 161 aa7.37□□□□□ -1.23
VPS13A-202ENST00000357409 NCK1P16333 377 aa7.37□□□□□ -1.23
VPS13A-202ENST00000357409 DSG1Q02413 1049 aa7.37□□□□□ -1.23
VPS13A-202ENST00000357409 CSTF3Q12996 717 aaKnown RBP7.37□□□□□ -1.23
VPS13A-202ENST00000357409 VWA5B1Q5TIE3 1220 aa7.37□□□□□ -1.23
VPS13A-202ENST00000357409 RSBN1Q5VWQ0 802 aaPredicted RBP7.37□□□□□ -1.23
VPS13A-202ENST00000357409 C10orf107Q8IVU9 208 aa7.37□□□□□ -1.23
VPS13A-202ENST00000357409 HERVK_113Q902F9 699 aa7.37□□□□□ -1.23
VPS13A-202ENST00000357409 DNASE1L2Q92874 299 aa7.37□□□□□ -1.23
VPS13A-202ENST00000357409 SLC17A6Q9P2U8 582 aa7.37□□□□□ -1.23
VPS13A-202ENST00000357409 PCDHA3Q9Y5H8 950 aa7.37□□□□□ -1.23
VPS13A-202ENST00000357409 TMEM114B3SHH9 223 aa7.37□□□□□ -1.23
VPS13A-202ENST00000357409 TRIM13O60858 407 aa7.37□□□□□ -1.23
VPS13A-202ENST00000357409 PGM3O95394 542 aa7.37□□□□□ -1.23
VPS13A-202ENST00000357409 BMP7P18075 431 aa7.37□□□□□ -1.23
VPS13A-202ENST00000357409 NUP107P57740 925 aa7.37□□□□□ -1.23
VPS13A-202ENST00000357409 TOP3AQ13472 1001 aaPredicted RBP7.37□□□□□ -1.23
VPS13A-202ENST00000357409 PERM1Q5SV97 790 aa7.37□□□□□ -1.23
VPS13A-202ENST00000357409 GRTP1Q5TC63 336 aa7.37□□□□□ -1.23
VPS13A-202ENST00000357409 PHC3Q8NDX5 983 aa7.37□□□□□ -1.23
VPS13A-202ENST00000357409 ITFG1Q8TB96 612 aa7.37□□□□□ -1.23
VPS13A-202ENST00000357409 PANX1Q96RD7 426 aa7.37□□□□□ -1.23
VPS13A-202ENST00000357409 LDAHQ9H6V9 325 aa7.37□□□□□ -1.23
VPS13A-202ENST00000357409 SLC35F4A4IF30 521 aa7.37□□□□□ -1.23
VPS13A-202ENST00000357409 GLTPD2A6NH11 291 aa7.37□□□□□ -1.23
VPS13A-202ENST00000357409 MFN2O95140 757 aa7.37□□□□□ -1.23
VPS13A-202ENST00000357409 ANXA11P50995 505 aaKnown RBP7.37□□□□□ -1.23
VPS13A-202ENST00000357409 PGGT1BP53609 377 aa7.37□□□□□ -1.23
VPS13A-202ENST00000357409 TGM3Q08188 693 aa7.37□□□□□ -1.23
VPS13A-202ENST00000357409 HIPK1Q86Z02 1210 aa7.37□□□□□ -1.23
VPS13A-202ENST00000357409 ATOH1Q92858 354 aaPredicted RBP7.37□□□□□ -1.23
VPS13A-202ENST00000357409 DCLK3Q9C098 648 aa7.37□□□□□ -1.23
VPS13A-202ENST00000357409 ADAMTS3O15072 1205 aa7.37□□□□□ -1.23
VPS13A-202ENST00000357409 KRT6AP02538 564 aa7.37□□□□□ -1.23
VPS13A-202ENST00000357409 KRT6BP04259 564 aa7.37□□□□□ -1.23
VPS13A-202ENST00000357409 KRT6CP48668 564 aa7.37□□□□□ -1.23
VPS13A-202ENST00000357409 MAN2A2P49641 1150 aa7.37□□□□□ -1.23
VPS13A-202ENST00000357409 BRSK1Q8TDC3 778 aa7.37□□□□□ -1.23
VPS13A-202ENST00000357409 CNDP2Q96KP4 475 aaKnown RBP7.37□□□□□ -1.23
VPS13A-202ENST00000357409 H3BM21 787 aa7.37□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 76.9 ms