RNA–Protein interactions for RNA: ENST00000336838.10

CCDC88A-202, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,505 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-202ENST00000336838 SERPIND1P05546 499 aa10.33□□□□□ -0.76
CCDC88A-202ENST00000336838 ZNF33AQ06730 810 aa10.33□□□□□ -0.76
CCDC88A-202ENST00000336838 CDH24Q86UP0 819 aa10.33□□□□□ -0.76
CCDC88A-202ENST00000336838 CPSF7Q8N684 471 aaKnown RBP10.33□□□□□ -0.76
CCDC88A-202ENST00000336838 TMCO6Q96DC7 493 aa10.33□□□□□ -0.76
CCDC88A-202ENST00000336838 MARCH2Q9P0N8 246 aa10.33□□□□□ -0.76
CCDC88A-202ENST00000336838 CAMTA1Q9Y6Y1 1673 aa10.33□□□□□ -0.76
CCDC88A-202ENST00000336838 KCNK1O00180 336 aa10.32□□□□□ -0.76
CCDC88A-202ENST00000336838 GRIN3BO60391 1043 aa10.32□□□□□ -0.76
CCDC88A-202ENST00000336838 H6PDO95479 791 aa10.32□□□□□ -0.76
CCDC88A-202ENST00000336838 PCNAP12004 261 aa10.32□□□□□ -0.76
CCDC88A-202ENST00000336838 PKNOX1P55347 436 aa10.32□□□□□ -0.76
CCDC88A-202ENST00000336838 TMEM62Q0P6H9 643 aa10.32□□□□□ -0.76
CCDC88A-202ENST00000336838 LRP6O75581 1613 aa10.32□□□□□ -0.76
CCDC88A-202ENST00000336838 TAF4O00268 1085 aa10.32□□□□□ -0.76
CCDC88A-202ENST00000336838 HAT1O14929 419 aa10.32□□□□□ -0.76
CCDC88A-202ENST00000336838 SUV39H1O43463 412 aa10.32□□□□□ -0.76
CCDC88A-202ENST00000336838 IDH3BO43837 385 aa10.32□□□□□ -0.76
CCDC88A-202ENST00000336838 SCELO95171 688 aa10.32□□□□□ -0.76
CCDC88A-202ENST00000336838 SRPRAP08240 638 aaKnown RBP10.32□□□□□ -0.76
CCDC88A-202ENST00000336838 COX7A2P14406 83 aa10.32□□□□□ -0.76
CCDC88A-202ENST00000336838 RPL7AP62424 266 aaKnown RBP10.32□□□□□ -0.76
CCDC88A-202ENST00000336838 EPHX4Q8IUS5 362 aa10.32□□□□□ -0.76
CCDC88A-202ENST00000336838 GRHL1Q9NZI5 618 aa10.32□□□□□ -0.76
CCDC88A-202ENST00000336838 PEX16Q9Y5Y5 336 aa10.32□□□□□ -0.76
CCDC88A-202ENST00000336838 GMEB1Q9Y692 573 aa10.32□□□□□ -0.76
CCDC88A-202ENST00000336838 RECQL4O94761 1208 aa10.32□□□□□ -0.76
CCDC88A-202ENST00000336838 VTNP04004 478 aa10.32□□□□□ -0.76
CCDC88A-202ENST00000336838 LPOP22079 712 aaPredicted RBP10.32□□□□□ -0.76
CCDC88A-202ENST00000336838 GUCA1AP43080 201 aaPredicted RBP10.32□□□□□ -0.76
CCDC88A-202ENST00000336838 FAM43BQ6ZT52 329 aaPredicted RBP10.32□□□□□ -0.76
CCDC88A-202ENST00000336838 KAT2BQ92831 832 aa10.32□□□□□ -0.76
CCDC88A-202ENST00000336838 TIFAQ96CG3 184 aa10.32□□□□□ -0.76
CCDC88A-202ENST00000336838 RWDD3Q9Y3V2 267 aa10.32□□□□□ -0.76
CCDC88A-202ENST00000336838 CBX4O00257 560 aa10.32□□□□□ -0.76
CCDC88A-202ENST00000336838 DNM1LO00429 736 aa10.32□□□□□ -0.76
CCDC88A-202ENST00000336838 SLC22A1O15245 554 aa10.32□□□□□ -0.76
CCDC88A-202ENST00000336838 SMNDC1O75940 238 aaKnown RBP eCLIP10.32□□□□□ -0.76
CCDC88A-202ENST00000336838 MFN2O95140 757 aa10.32□□□□□ -0.76
CCDC88A-202ENST00000336838 GRM5P41594 1212 aa10.32□□□□□ -0.76
CCDC88A-202ENST00000336838 UBE3AQ05086 875 aa10.32□□□□□ -0.76
CCDC88A-202ENST00000336838 CCDC36Q8IYA8 594 aa10.32□□□□□ -0.76
CCDC88A-202ENST00000336838 SUCOQ9UBS9 1254 aaKnown RBP10.32□□□□□ -0.76
CCDC88A-202ENST00000336838 TSR3Q9UJK0 312 aaKnown RBP10.32□□□□□ -0.76
CCDC88A-202ENST00000336838 DNMT3LQ9UJW3 386 aa10.32□□□□□ -0.76
CCDC88A-202ENST00000336838 ZNF232Q9UNY5 417 aa10.32□□□□□ -0.76
CCDC88A-202ENST00000336838 USP20Q9Y2K6 914 aa10.32□□□□□ -0.76
CCDC88A-202ENST00000336838 ROBO1Q9Y6N7 1651 aa10.32□□□□□ -0.76
CCDC88A-202ENST00000336838 CRYBG1Q9Y4K1 1723 aa10.32□□□□□ -0.76
CCDC88A-202ENST00000336838 PTGES3LE9PB15 166 aa10.32□□□□□ -0.76
CCDC88A-202ENST00000336838 MBL2P11226 248 aaPredicted RBP10.32□□□□□ -0.76
CCDC88A-202ENST00000336838 LCP2Q13094 533 aa10.32□□□□□ -0.76
CCDC88A-202ENST00000336838 TUBA3CQ13748 450 aa10.32□□□□□ -0.76
CCDC88A-202ENST00000336838 QPCTQ16769 361 aa10.32□□□□□ -0.76
CCDC88A-202ENST00000336838 FBXO43Q4G163 708 aa10.32□□□□□ -0.76
CCDC88A-202ENST00000336838 MIB1Q86YT6 1006 aa10.32□□□□□ -0.76
CCDC88A-202ENST00000336838 ASB9Q96DX5 294 aa10.32□□□□□ -0.76
CCDC88A-202ENST00000336838 APOL2Q9BQE5 337 aa10.32□□□□□ -0.76
CCDC88A-202ENST00000336838 GPATCH2LQ9NWQ4 482 aa10.32□□□□□ -0.76
CCDC88A-202ENST00000336838 SSR3Q9UNL2 185 aa10.32□□□□□ -0.76
CCDC88A-202ENST00000336838 FAM189A1O60320 539 aa10.32□□□□□ -0.76
CCDC88A-202ENST00000336838 CST1P01037 141 aa10.32□□□□□ -0.76
CCDC88A-202ENST00000336838 NOS3P29474 1203 aa10.32□□□□□ -0.76
CCDC88A-202ENST00000336838 GMFBP60983 142 aa10.32□□□□□ -0.76
CCDC88A-202ENST00000336838 RPS7P62081 194 aaKnown RBP10.32□□□□□ -0.76
CCDC88A-202ENST00000336838 ALYREFQ86V81 257 aaKnown RBP10.32□□□□□ -0.76
CCDC88A-202ENST00000336838 SYT12Q8IV01 421 aa10.32□□□□□ -0.76
CCDC88A-202ENST00000336838 ZNF420Q8TAQ5 688 aaPredicted RBP10.32□□□□□ -0.76
CCDC88A-202ENST00000336838 RCN3Q96D15 328 aa10.32□□□□□ -0.76
CCDC88A-202ENST00000336838 PIGUQ9H490 435 aa10.32□□□□□ -0.76
CCDC88A-202ENST00000336838 CILPO75339 1184 aa10.32□□□□□ -0.76
CCDC88A-202ENST00000336838 ASLP04424 464 aa10.32□□□□□ -0.76
CCDC88A-202ENST00000336838 HGFP14210 728 aa10.32□□□□□ -0.76
CCDC88A-202ENST00000336838 TFEBP19484 476 aa10.32□□□□□ -0.76
CCDC88A-202ENST00000336838 MPP1Q00013 466 aa10.32□□□□□ -0.76
CCDC88A-202ENST00000336838 BCL2L1Q07817 233 aa10.32□□□□□ -0.76
CCDC88A-202ENST00000336838 CUZD1Q86UP6 607 aa10.32□□□□□ -0.76
CCDC88A-202ENST00000336838 SEC14L1Q92503 715 aa10.32□□□□□ -0.76
CCDC88A-202ENST00000336838 TPD52L3Q96J77 140 aa10.32□□□□□ -0.76
CCDC88A-202ENST00000336838 SDCBP2Q9H190 292 aa10.32□□□□□ -0.76
CCDC88A-202ENST00000336838 PLA2G4CQ9UP65 541 aa10.32□□□□□ -0.76
CCDC88A-202ENST00000336838 UROSP10746 265 aa10.32□□□□□ -0.76
CCDC88A-202ENST00000336838 POLR2EP19388 210 aaKnown RBP10.32□□□□□ -0.76
CCDC88A-202ENST00000336838 SLC16A1P53985 500 aa10.32□□□□□ -0.76
CCDC88A-202ENST00000336838 SNRPD1P62314 119 aaKnown RBP10.32□□□□□ -0.76
CCDC88A-202ENST00000336838 TEX44Q53QW1 395 aa10.32□□□□□ -0.76
CCDC88A-202ENST00000336838 TYW3Q6IPR3 259 aaKnown RBP10.32□□□□□ -0.76
CCDC88A-202ENST00000336838 SEMA6AQ9H2E6 1030 aa10.32□□□□□ -0.76
CCDC88A-202ENST00000336838 ERVK-5Q9HDB9 667 aa10.32□□□□□ -0.76
CCDC88A-202ENST00000336838 ZDHHC18Q9NUE0 388 aa10.32□□□□□ -0.76
CCDC88A-202ENST00000336838 NUDT4Q9NZJ9 180 aa10.32□□□□□ -0.76
CCDC88A-202ENST00000336838 ITM2BQ9Y287 266 aa10.32□□□□□ -0.76
CCDC88A-202ENST00000336838 FADS3Q9Y5Q0 445 aa10.32□□□□□ -0.76
CCDC88A-202ENST00000336838 TCEA2Q15560 299 aa10.31□□□□□ -0.76
CCDC88A-202ENST00000336838 CXXC5Q7LFL8 322 aaKnown RBP10.31□□□□□ -0.76
CCDC88A-202ENST00000336838 ERI1Q8IV48 349 aaKnown RBP10.31□□□□□ -0.76
CCDC88A-202ENST00000336838 OFCC1Q8IZS5 231 aa10.31□□□□□ -0.76
CCDC88A-202ENST00000336838 CACTIN-AS1Q8N1I8 211 aa10.31□□□□□ -0.76
CCDC88A-202ENST00000336838 ZNF540Q8NDQ6 660 aa10.31□□□□□ -0.76
CCDC88A-202ENST00000336838 OSBPL7Q9BZF2 842 aa10.31□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 46.2 ms