RNA–Protein interactions for RNA: ENST00000326004.4

HMGB1-201, Transcript of high mobility group box 1, humanhuman

TSL 3 BASIC

Gene HMGB1, Length 821 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-201ENST00000326004 CRYABP02511 175 aaKnown RBP3.46□□□□□ -1.86
HMGB1-201ENST00000326004 EIF2S1P05198 315 aaKnown RBP3.46□□□□□ -1.86
HMGB1-201ENST00000326004 ITGAXP20702 1163 aa3.46□□□□□ -1.86
HMGB1-201ENST00000326004 NFKBIAP25963 317 aa3.46□□□□□ -1.86
HMGB1-201ENST00000326004 CDC25AP30304 524 aa3.46□□□□□ -1.86
HMGB1-201ENST00000326004 SHMT1P34896 483 aa3.46□□□□□ -1.86
HMGB1-201ENST00000326004 PIP4K2AP48426 406 aaPredicted RBP3.46□□□□□ -1.86
HMGB1-201ENST00000326004 NUDT6P53370 316 aa3.46□□□□□ -1.86
HMGB1-201ENST00000326004 RAD23BP54727 409 aa3.46□□□□□ -1.86
HMGB1-201ENST00000326004 ARF3P61204 181 aaPredicted RBP3.46□□□□□ -1.86
HMGB1-201ENST00000326004 ARF1P84077 181 aaKnown RBP3.46□□□□□ -1.86
HMGB1-201ENST00000326004 CSTF3Q12996 717 aaKnown RBP3.46□□□□□ -1.86
HMGB1-201ENST00000326004 GPS2Q13227 327 aa3.46□□□□□ -1.86
HMGB1-201ENST00000326004 MYBPC2Q14324 1141 aa3.46□□□□□ -1.86
HMGB1-201ENST00000326004 NEDD9Q14511 834 aa3.46□□□□□ -1.86
HMGB1-201ENST00000326004 FGFBP1Q14512 234 aa3.46□□□□□ -1.86
HMGB1-201ENST00000326004 DRAP1Q14919 205 aaPredicted RBP3.46□□□□□ -1.86
HMGB1-201ENST00000326004 KRT24Q2M2I5 525 aa3.46□□□□□ -1.86
HMGB1-201ENST00000326004 MZT2BQ6NZ67 158 aa3.46□□□□□ -1.86
HMGB1-201ENST00000326004 NCEH1Q6PIU2 408 aa3.46□□□□□ -1.86
HMGB1-201ENST00000326004 LCTLQ6UWM7 567 aa3.46□□□□□ -1.86
HMGB1-201ENST00000326004 LINGO2Q7L985 606 aa3.46□□□□□ -1.86
HMGB1-201ENST00000326004 NOXA1Q86UR1 476 aa3.46□□□□□ -1.86
HMGB1-201ENST00000326004 PDILTQ8N807 584 aa3.46□□□□□ -1.86
HMGB1-201ENST00000326004 FRMD1Q8N878 549 aa3.46□□□□□ -1.86
HMGB1-201ENST00000326004 TMEM116Q8NCL8 245 aa3.46□□□□□ -1.86
HMGB1-201ENST00000326004 GPT2Q8TD30 523 aa3.46□□□□□ -1.86
HMGB1-201ENST00000326004 SCARB1Q8WTV0 552 aa3.46□□□□□ -1.86
HMGB1-201ENST00000326004 PSPC1Q8WXF1 523 aaKnown RBP3.46□□□□□ -1.86
HMGB1-201ENST00000326004 POMGNT1Q8WZA1 660 aa3.46□□□□□ -1.86
HMGB1-201ENST00000326004 TRIB2Q92519 343 aa3.46□□□□□ -1.86
HMGB1-201ENST00000326004 PABPC5Q96DU9 382 aaKnown RBP3.46□□□□□ -1.86
HMGB1-201ENST00000326004 ZNF570Q96NI8 536 aa3.46□□□□□ -1.86
HMGB1-201ENST00000326004 CHCHD6Q9BRQ6 235 aa3.46□□□□□ -1.86
HMGB1-201ENST00000326004 MMTAG2Q9BU76 263 aaKnown RBP3.46□□□□□ -1.86
HMGB1-201ENST00000326004 KRTAP9-8Q9BYQ0 159 aa3.46□□□□□ -1.86
HMGB1-201ENST00000326004 CLK4Q9HAZ1 481 aaKnown RBP3.46□□□□□ -1.86
HMGB1-201ENST00000326004 SCPEP1Q9HB40 452 aa3.46□□□□□ -1.86
HMGB1-201ENST00000326004 FBRSL1Q9HCM7 1045 aaKnown RBP3.46□□□□□ -1.86
HMGB1-201ENST00000326004 BLOC1S4Q9NUP1 217 aa3.46□□□□□ -1.86
HMGB1-201ENST00000326004 DLGAP2Q9P1A6 1054 aa3.46□□□□□ -1.86
HMGB1-201ENST00000326004 MKLN1Q9UL63 735 aa3.46□□□□□ -1.86
HMGB1-201ENST00000326004 SLC45A1Q9Y2W3 748 aa3.46□□□□□ -1.86
HMGB1-201ENST00000326004 LSM4Q9Y4Z0 139 aaKnown RBP3.46□□□□□ -1.86
HMGB1-201ENST00000326004 LYVE1Q9Y5Y7 322 aa3.46□□□□□ -1.86
HMGB1-201ENST00000326004 PIAS3Q9Y6X2 628 aa3.46□□□□□ -1.86
HMGB1-201ENST00000326004 THOC2Q8NI27 1593 aaKnown RBP3.46□□□□□ -1.86
HMGB1-201ENST00000326004 IGHV4-28A0A0C4DH34 117 aa3.45□□□□□ -1.86
HMGB1-201ENST00000326004 A0A1B0GVM2 712 aa3.45□□□□□ -1.86
HMGB1-201ENST00000326004 INAFM1C9JVW0 142 aa3.45□□□□□ -1.86
HMGB1-201ENST00000326004 IPO7O95373 1038 aaKnown RBP3.45□□□□□ -1.86
HMGB1-201ENST00000326004 IGKV2-30P06310 120 aa3.45□□□□□ -1.86
HMGB1-201ENST00000326004 PBX3P40426 434 aa3.45□□□□□ -1.86
HMGB1-201ENST00000326004 RFX5P48382 616 aaPredicted RBP3.45□□□□□ -1.86
HMGB1-201ENST00000326004 PMS2P54278 862 aa3.45□□□□□ -1.86
HMGB1-201ENST00000326004 DSC1Q08554 894 aa3.45□□□□□ -1.86
HMGB1-201ENST00000326004 CTTNQ14247 550 aaKnown RBP3.45□□□□□ -1.86
HMGB1-201ENST00000326004 FRG1Q14331 258 aaKnown RBP3.45□□□□□ -1.86
HMGB1-201ENST00000326004 HNF4GQ14541 408 aa3.45□□□□□ -1.86
HMGB1-201ENST00000326004 ALG11Q2TAA5 492 aa3.45□□□□□ -1.86
HMGB1-201ENST00000326004 USP41Q3LFD5 358 aa3.45□□□□□ -1.86
HMGB1-201ENST00000326004 SGO1Q5FBB7 561 aa3.45□□□□□ -1.86
HMGB1-201ENST00000326004 C6orf141Q5SZD1 244 aa3.45□□□□□ -1.86
HMGB1-201ENST00000326004 GPATCH4Q5T3I0 446 aaKnown RBP3.45□□□□□ -1.86
HMGB1-201ENST00000326004 PLEKHA7Q6IQ23 1121 aa3.45□□□□□ -1.86
HMGB1-201ENST00000326004 TSSK4Q6SA08 328 aa3.45□□□□□ -1.86
HMGB1-201ENST00000326004 SARM1Q6SZW1 724 aa3.45□□□□□ -1.86
HMGB1-201ENST00000326004 ARHGAP12Q8IWW6 846 aa3.45□□□□□ -1.86
HMGB1-201ENST00000326004 ZBTB2Q8N680 514 aa3.45□□□□□ -1.86
HMGB1-201ENST00000326004 MIGA1Q8NAN2 632 aa3.45□□□□□ -1.86
HMGB1-201ENST00000326004 AGBL3Q8NEM8 1001 aa3.45□□□□□ -1.86
HMGB1-201ENST00000326004 HUS1BQ8NHY5 278 aa3.45□□□□□ -1.86
HMGB1-201ENST00000326004 ARRDC2Q8TBH0 407 aa3.45□□□□□ -1.86
HMGB1-201ENST00000326004 NSMCE1Q8WV22 266 aa3.45□□□□□ -1.86
HMGB1-201ENST00000326004 SGCDQ92629 289 aa3.45□□□□□ -1.86
HMGB1-201ENST00000326004 MMABQ96EY8 250 aaPredicted RBP3.45□□□□□ -1.86
HMGB1-201ENST00000326004 PERPQ96FX8 193 aa3.45□□□□□ -1.86
HMGB1-201ENST00000326004 TMEM68Q96MH6 324 aa3.45□□□□□ -1.86
HMGB1-201ENST00000326004 FAM110AQ9BQ89 295 aa3.45□□□□□ -1.86
HMGB1-201ENST00000326004 ITPAQ9BY32 194 aa3.45□□□□□ -1.86
HMGB1-201ENST00000326004 KIF9Q9HAQ2 790 aa3.45□□□□□ -1.86
HMGB1-201ENST00000326004 PLEKHA5Q9HAU0 1116 aa3.45□□□□□ -1.86
HMGB1-201ENST00000326004 DDX4Q9NQI0 724 aaKnown RBP3.45□□□□□ -1.86
HMGB1-201ENST00000326004 HCFC1R1Q9NWW0 138 aa3.45□□□□□ -1.86
HMGB1-201ENST00000326004 CISD1Q9NZ45 108 aaKnown RBP3.45□□□□□ -1.86
HMGB1-201ENST00000326004 OR6C3Q9NZP0 311 aa3.45□□□□□ -1.86
HMGB1-201ENST00000326004 ABI3Q9P2A4 366 aa3.45□□□□□ -1.86
HMGB1-201ENST00000326004 SLCO3A1Q9UIG8 710 aa3.45□□□□□ -1.86
HMGB1-201ENST00000326004 SMARCA2P51531 1590 aa3.45□□□□□ -1.86
HMGB1-201ENST00000326004 SPATA31D1Q6ZQQ2 1576 aa3.45□□□□□ -1.86
HMGB1-201ENST00000326004 HECW2Q9P2P5 1572 aa3.45□□□□□ -1.86
HMGB1-201ENST00000326004 FAM237BA0A1B0GVD1 139 aa3.44□□□□□ -1.86
HMGB1-201ENST00000326004 ANKRD18BA2A2Z9 1011 aa3.44□□□□□ -1.86
HMGB1-201ENST00000326004 TMEM202A6NGA9 273 aa3.44□□□□□ -1.86
HMGB1-201ENST00000326004 LIPT2A6NK58 231 aa3.44□□□□□ -1.86
HMGB1-201ENST00000326004 GTPBP1O00178 669 aaKnown RBP3.44□□□□□ -1.86
HMGB1-201ENST00000326004 TIPRLO75663 272 aa3.44□□□□□ -1.86
HMGB1-201ENST00000326004 HOXC6P09630 235 aa3.44□□□□□ -1.86
HMGB1-201ENST00000326004 KRT10P13645 584 aa3.44□□□□□ -1.86
HMGB1-201ENST00000326004 ZNF182P17025 639 aaPredicted RBP3.44□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms