RNA–Protein interactions for RNA: ENST00000636194.1

SCN1A-212, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 8,508 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-212ENST00000636194 FTMTQ8N4E7 242 aa6.05□□□□□ -1.44
SCN1A-212ENST00000636194 SLC44A3Q8N4M1 653 aa6.05□□□□□ -1.44
SCN1A-212ENST00000636194 C2orf49Q9BVC5 232 aaPredicted RBP6.05□□□□□ -1.44
SCN1A-212ENST00000636194 FAM126AQ9BYI3 521 aaPredicted RBP6.05□□□□□ -1.44
SCN1A-212ENST00000636194 LDAHQ9H6V9 325 aa6.05□□□□□ -1.44
SCN1A-212ENST00000636194 C14orf93Q9H972 538 aaKnown RBP6.05□□□□□ -1.44
SCN1A-212ENST00000636194 PEX16Q9Y5Y5 336 aa6.05□□□□□ -1.44
SCN1A-212ENST00000636194 LOC102724428A0A0B4J2F2 783 aa6.05□□□□□ -1.44
SCN1A-212ENST00000636194 FLRT2O43155 660 aa6.05□□□□□ -1.44
SCN1A-212ENST00000636194 IFNA10P01566 189 aa6.05□□□□□ -1.44
SCN1A-212ENST00000636194 IFNA21P01568 189 aa6.05□□□□□ -1.44
SCN1A-212ENST00000636194 IFNA4P05014 189 aa6.05□□□□□ -1.44
SCN1A-212ENST00000636194 IRF2P14316 349 aa6.05□□□□□ -1.44
SCN1A-212ENST00000636194 TUBG1P23258 451 aa6.05□□□□□ -1.44
SCN1A-212ENST00000636194 GADD45AP24522 165 aa6.05□□□□□ -1.44
SCN1A-212ENST00000636194 DLSTP36957 453 aa6.05□□□□□ -1.44
SCN1A-212ENST00000636194 GTF2A2P52657 109 aa6.05□□□□□ -1.44
SCN1A-212ENST00000636194 SIK1P57059 783 aa6.05□□□□□ -1.44
SCN1A-212ENST00000636194 ERVK-9P63128 1117 aa6.05□□□□□ -1.44
SCN1A-212ENST00000636194 RAP1GAP2Q684P5 730 aa6.05□□□□□ -1.44
SCN1A-212ENST00000636194 ZER1Q7Z7L7 766 aa6.05□□□□□ -1.44
SCN1A-212ENST00000636194 GSPT2Q8IYD1 628 aaKnown RBP6.05□□□□□ -1.44
SCN1A-212ENST00000636194 C8orf59Q8N0T1 100 aaPredicted RBP6.05□□□□□ -1.44
SCN1A-212ENST00000636194 OR52K2Q8NGK3 314 aa6.05□□□□□ -1.44
SCN1A-212ENST00000636194 SNX27Q96L92 541 aa6.05□□□□□ -1.44
SCN1A-212ENST00000636194 NIFKQ9BYG3 293 aaKnown RBP6.05□□□□□ -1.44
SCN1A-212ENST00000636194 CRISPLD1Q9H336 500 aa6.05□□□□□ -1.44
SCN1A-212ENST00000636194 HMGXB4Q9UGU5 601 aa6.05□□□□□ -1.44
SCN1A-212ENST00000636194 ZNHIT2Q9UHR6 403 aa6.05□□□□□ -1.44
SCN1A-212ENST00000636194 PCDHB2Q9Y5E7 798 aa6.05□□□□□ -1.44
SCN1A-212ENST00000636194 TDRD6O60522 2096 aaKnown RBP6.05□□□□□ -1.44
SCN1A-212ENST00000636194 UTYO14607 1347 aa6.04□□□□□ -1.44
SCN1A-212ENST00000636194 TRAV19A0A0A6YYK7 116 aa6.04□□□□□ -1.44
SCN1A-212ENST00000636194 STMND1H3BQB6 276 aa6.04□□□□□ -1.44
SCN1A-212ENST00000636194 HBP1O60381 514 aa6.04□□□□□ -1.44
SCN1A-212ENST00000636194 MATN4O95460 622 aa6.04□□□□□ -1.44
SCN1A-212ENST00000636194 ADH1CP00326 375 aa6.04□□□□□ -1.44
SCN1A-212ENST00000636194 MT-ND5P03915 603 aa6.04□□□□□ -1.44
SCN1A-212ENST00000636194 THP07101 528 aa6.04□□□□□ -1.44
SCN1A-212ENST00000636194 CYP2C9P11712 490 aa6.04□□□□□ -1.44
SCN1A-212ENST00000636194 PPIBP23284 216 aaKnown RBP6.04□□□□□ -1.44
SCN1A-212ENST00000636194 CD40LGP29965 261 aa6.04□□□□□ -1.44
SCN1A-212ENST00000636194 SNRPD1P62314 119 aaKnown RBP6.04□□□□□ -1.44
SCN1A-212ENST00000636194 ENPEPQ07075 957 aa6.04□□□□□ -1.44
SCN1A-212ENST00000636194 SNTA1Q13424 505 aa6.04□□□□□ -1.44
SCN1A-212ENST00000636194 FAM83HQ6ZRV2 1179 aaPredicted RBP6.04□□□□□ -1.44
SCN1A-212ENST00000636194 ARCQ7LC44 396 aa6.04□□□□□ -1.44
SCN1A-212ENST00000636194 KANSL1Q7Z3B3 1105 aa6.04□□□□□ -1.44
SCN1A-212ENST00000636194 ARHGAP22Q7Z5H3 698 aa6.04□□□□□ -1.44
SCN1A-212ENST00000636194 STRA8Q7Z7C7 330 aa6.04□□□□□ -1.44
SCN1A-212ENST00000636194 KATNAL2Q8IYT4 538 aa6.04□□□□□ -1.44
SCN1A-212ENST00000636194 CCDC24Q8N4L8 307 aa6.04□□□□□ -1.44
SCN1A-212ENST00000636194 ZNF565Q8N9K5 539 aa6.04□□□□□ -1.44
SCN1A-212ENST00000636194 OR4C15Q8NGM1 316 aa6.04□□□□□ -1.44
SCN1A-212ENST00000636194 RNF121Q9H920 327 aa6.04□□□□□ -1.44
SCN1A-212ENST00000636194 ABCB6Q9NP58 842 aa6.04□□□□□ -1.44
SCN1A-212ENST00000636194 RAPGEFL1Q9UHV5 662 aa6.04□□□□□ -1.44
SCN1A-212ENST00000636194 PSAT1Q9Y617 370 aa6.04□□□□□ -1.44
SCN1A-212ENST00000636194 CLIC4Q9Y696 253 aa6.04□□□□□ -1.44
SCN1A-212ENST00000636194 CDK13Q14004 1512 aaKnown RBP6.04□□□□□ -1.44
SCN1A-212ENST00000636194 CATP04040 527 aaKnown RBP6.04□□□□□ -1.44
SCN1A-212ENST00000636194 PGRP06401 933 aa6.04□□□□□ -1.44
SCN1A-212ENST00000636194 OR3A3P47888 321 aa6.04□□□□□ -1.44
SCN1A-212ENST00000636194 OR3A2P47893 321 aa6.04□□□□□ -1.44
SCN1A-212ENST00000636194 NEK3P51956 506 aa6.04□□□□□ -1.44
SCN1A-212ENST00000636194 CSHL1Q14406 222 aa6.04□□□□□ -1.44
SCN1A-212ENST00000636194 HYIQ5T013 277 aa6.04□□□□□ -1.44
SCN1A-212ENST00000636194 RBM20Q5T481 1227 aaKnown RBP6.04□□□□□ -1.44
SCN1A-212ENST00000636194 ACSM2BQ68CK6 577 aa6.04□□□□□ -1.44
SCN1A-212ENST00000636194 CCNI2Q6ZMN8 369 aaPredicted RBP6.04□□□□□ -1.44
SCN1A-212ENST00000636194 CDYL2Q8N8U2 506 aa6.04□□□□□ -1.44
SCN1A-212ENST00000636194 LENG9Q96B70 501 aa6.04□□□□□ -1.44
SCN1A-212ENST00000636194 LRRC1Q9BTT6 524 aa6.04□□□□□ -1.44
SCN1A-212ENST00000636194 NOL11Q9H8H0 719 aaKnown RBP6.04□□□□□ -1.44
SCN1A-212ENST00000636194 TRPV5Q9NQA5 729 aa6.04□□□□□ -1.44
SCN1A-212ENST00000636194 IFT80Q9P2H3 777 aaPredicted RBP6.04□□□□□ -1.44
SCN1A-212ENST00000636194 MRPS17Q9Y2R5 130 aaKnown RBP6.04□□□□□ -1.44
SCN1A-212ENST00000636194 A0A1B0GTH6 734 aa6.04□□□□□ -1.44
SCN1A-212ENST00000636194 CLEC3AO75596 197 aa6.04□□□□□ -1.44
SCN1A-212ENST00000636194 INMTO95050 263 aa6.04□□□□□ -1.44
SCN1A-212ENST00000636194 C6P13671 934 aa6.04□□□□□ -1.44
SCN1A-212ENST00000636194 CCR1P32246 355 aa6.04□□□□□ -1.44
SCN1A-212ENST00000636194 RCAN1P53805 252 aa6.04□□□□□ -1.44
SCN1A-212ENST00000636194 LRRC14Q15048 493 aa6.04□□□□□ -1.44
SCN1A-212ENST00000636194 SNRNP35Q16560 246 aaKnown RBP6.04□□□□□ -1.44
SCN1A-212ENST00000636194 AP5B1Q2VPB7 878 aa6.04□□□□□ -1.44
SCN1A-212ENST00000636194 ATPAF1Q5TC12 328 aaPredicted RBP6.04□□□□□ -1.44
SCN1A-212ENST00000636194 JAMLQ86YT9 394 aa6.04□□□□□ -1.44
SCN1A-212ENST00000636194 SYNPOQ8N3V7 929 aa6.04□□□□□ -1.44
SCN1A-212ENST00000636194 ZNF578Q96N58 590 aaPredicted RBP6.04□□□□□ -1.44
SCN1A-212ENST00000636194 EIF2AK1Q9BQI3 630 aaKnown RBP6.04□□□□□ -1.44
SCN1A-212ENST00000636194 HTATIP2Q9BUP3 242 aa6.04□□□□□ -1.44
SCN1A-212ENST00000636194 MND1Q9BWT6 205 aa6.04□□□□□ -1.44
SCN1A-212ENST00000636194 C17orf75Q9HAS0 396 aa6.04□□□□□ -1.44
SCN1A-212ENST00000636194 C19orf12Q9NSK7 152 aa6.04□□□□□ -1.44
SCN1A-212ENST00000636194 KCNN3Q9UGI6 736 aa6.04□□□□□ -1.44
SCN1A-212ENST00000636194 C3orf18Q9UK00 162 aa6.04□□□□□ -1.44
SCN1A-212ENST00000636194 FAM186AA6NE01 2351 aa6.04□□□□□ -1.44
SCN1A-212ENST00000636194 C9J4A7 227 aa6.04□□□□□ -1.44
SCN1A-212ENST00000636194 AKR1B1P15121 316 aa6.04□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms