RNA–Protein interactions for RNA: ENST00000622516.4

CUX1-221, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-221ENST00000622516 CCDC6Q16204 474 aa10.69□□□□□ -0.7
CUX1-221ENST00000622516 FRMD7Q6ZUT3 714 aa10.69□□□□□ -0.7
CUX1-221ENST00000622516 CILP2Q8IUL8 1156 aa10.69□□□□□ -0.7
CUX1-221ENST00000622516 LRRC49Q8IUZ0 686 aa10.69□□□□□ -0.7
CUX1-221ENST00000622516 SLAIN1Q8ND83 568 aa10.69□□□□□ -0.7
CUX1-221ENST00000622516 CFAP61Q8NHU2 1237 aa10.69□□□□□ -0.7
CUX1-221ENST00000622516 PDCD6IPQ8WUM4 868 aaKnown RBP10.69□□□□□ -0.7
CUX1-221ENST00000622516 POLR1EQ9GZS1 481 aaKnown RBP10.69□□□□□ -0.7
CUX1-221ENST00000622516 ATP13A1Q9HD20 1204 aa10.69□□□□□ -0.7
CUX1-221ENST00000622516 TCF7L2Q9NQB0 619 aa10.69□□□□□ -0.7
CUX1-221ENST00000622516 DNAJC28Q9NX36 388 aa10.69□□□□□ -0.7
CUX1-221ENST00000622516 MCM8Q9UJA3 840 aa10.69□□□□□ -0.7
CUX1-221ENST00000622516 PLA2G4CQ9UP65 541 aa10.69□□□□□ -0.7
CUX1-221ENST00000622516 ZNF840PA6NDX5 716 aa10.68□□□□□ -0.7
CUX1-221ENST00000622516 ACSL4O60488 711 aa10.68□□□□□ -0.7
CUX1-221ENST00000622516 TBX10O75333 385 aa10.68□□□□□ -0.7
CUX1-221ENST00000622516 SKAP2O75563 359 aaPredicted RBP10.68□□□□□ -0.7
CUX1-221ENST00000622516 WFS1O76024 890 aa10.68□□□□□ -0.7
CUX1-221ENST00000622516 MT-CO1P00395 513 aa10.68□□□□□ -0.7
CUX1-221ENST00000622516 BMP1P13497 986 aa10.68□□□□□ -0.7
CUX1-221ENST00000622516 GNAZP19086 355 aa10.68□□□□□ -0.7
CUX1-221ENST00000622516 AOC1P19801 751 aa10.68□□□□□ -0.7
CUX1-221ENST00000622516 CPOXP36551 454 aa10.68□□□□□ -0.7
CUX1-221ENST00000622516 RPL14P50914 215 aaKnown RBP10.68□□□□□ -0.7
CUX1-221ENST00000622516 SEMA3AQ14563 771 aa10.68□□□□□ -0.7
CUX1-221ENST00000622516 TAF12Q16514 161 aa10.68□□□□□ -0.7
CUX1-221ENST00000622516 DBN1Q16643 649 aa10.68□□□□□ -0.7
CUX1-221ENST00000622516 FBXO48Q5FWF7 155 aa10.68□□□□□ -0.7
CUX1-221ENST00000622516 GPR158Q5T848 1215 aa10.68□□□□□ -0.7
CUX1-221ENST00000622516 TEX26Q8N6G2 289 aa10.68□□□□□ -0.7
CUX1-221ENST00000622516 NAT14Q8WUY8 206 aa10.68□□□□□ -0.7
CUX1-221ENST00000622516 SREK1Q8WXA9 508 aaKnown RBP10.68□□□□□ -0.7
CUX1-221ENST00000622516 SPATA17Q96L03 361 aa10.68□□□□□ -0.7
CUX1-221ENST00000622516 PRICKLE1Q96MT3 831 aaPredicted RBP10.68□□□□□ -0.7
CUX1-221ENST00000622516 LENG8Q96PV6 779 aaPredicted RBP10.68□□□□□ -0.7
CUX1-221ENST00000622516 PANX3Q96QZ0 392 aa10.68□□□□□ -0.7
CUX1-221ENST00000622516 CLSTN3Q9BQT9 956 aa10.68□□□□□ -0.7
CUX1-221ENST00000622516 DRC3Q9H069 523 aa10.68□□□□□ -0.7
CUX1-221ENST00000622516 RNF208Q9H0X6 261 aa10.68□□□□□ -0.7
CUX1-221ENST00000622516 POMKQ9H5K3 350 aa10.68□□□□□ -0.7
CUX1-221ENST00000622516 ARNT2Q9HBZ2 717 aa10.68□□□□□ -0.7
CUX1-221ENST00000622516 TNFRSF12AQ9NP84 129 aa10.68□□□□□ -0.7
CUX1-221ENST00000622516 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP10.68□□□□□ -0.71e-6■■■■□ 23.3
CUX1-221ENST00000622516 DNMT3LQ9UJW3 386 aa10.68□□□□□ -0.7
CUX1-221ENST00000622516 PCDHGC4Q9Y5F7 938 aa10.68□□□□□ -0.7
CUX1-221ENST00000622516 H7C4K7 107 aa10.68□□□□□ -0.7
CUX1-221ENST00000622516 PRAMEF11O60813 436 aa10.68□□□□□ -0.7
CUX1-221ENST00000622516 PDHA1P08559 390 aa10.68□□□□□ -0.7
CUX1-221ENST00000622516 ZDHHC11BP0C7U3 371 aa10.68□□□□□ -0.7
CUX1-221ENST00000622516 COL6A1P12109 1028 aa10.68□□□□□ -0.7
CUX1-221ENST00000622516 CORO1AP31146 461 aaKnown RBP10.68□□□□□ -0.7
CUX1-221ENST00000622516 GNA12Q03113 381 aa10.68□□□□□ -0.7
CUX1-221ENST00000622516 CDK18Q07002 472 aa10.68□□□□□ -0.7
CUX1-221ENST00000622516 CUL3Q13618 768 aa10.68□□□□□ -0.7
CUX1-221ENST00000622516 LSM12Q3MHD2 195 aaKnown RBP10.68□□□□□ -0.7
CUX1-221ENST00000622516 HECTD2Q5U5R9 776 aa10.68□□□□□ -0.7
CUX1-221ENST00000622516 FAM91A1Q658Y4 838 aa10.68□□□□□ -0.7
CUX1-221ENST00000622516 RIPOR1Q6ZS17 1223 aa10.68□□□□□ -0.7
CUX1-221ENST00000622516 TRIM67Q6ZTA4 783 aa10.68□□□□□ -0.7
CUX1-221ENST00000622516 N4BP2L2Q92802 583 aaPredicted RBP10.68□□□□□ -0.7
CUX1-221ENST00000622516 RMDN1Q96DB5 314 aa10.68□□□□□ -0.7
CUX1-221ENST00000622516 FAM167BQ9BTA0 163 aa10.68□□□□□ -0.7
CUX1-221ENST00000622516 PRKD2Q9BZL6 878 aa10.68□□□□□ -0.7
CUX1-221ENST00000622516 ALG9Q9H6U8 611 aa10.68□□□□□ -0.7
CUX1-221ENST00000622516 VPS45Q9NRW7 570 aa10.68□□□□□ -0.7
CUX1-221ENST00000622516 IGSF5Q9NSI5 407 aa10.68□□□□□ -0.7
CUX1-221ENST00000622516 GTSE1Q9NYZ3 720 aa10.68□□□□□ -0.7
CUX1-221ENST00000622516 ANKRD6Q9Y2G4 727 aa10.68□□□□□ -0.7
CUX1-221ENST00000622516 MROH6A6NGR9 719 aa10.68□□□□□ -0.7
CUX1-221ENST00000622516 MATN2O00339 956 aa10.68□□□□□ -0.7
CUX1-221ENST00000622516 GRID2O43424 1007 aa10.68□□□□□ -0.7
CUX1-221ENST00000622516 GOT2P00505 430 aaKnown RBP10.68□□□□□ -0.7
CUX1-221ENST00000622516 HOXD9P28356 352 aaPredicted RBP10.68□□□□□ -0.7
CUX1-221ENST00000622516 CA8P35219 290 aa10.68□□□□□ -0.7
CUX1-221ENST00000622516 HADHAP40939 763 aa10.68□□□□□ -0.7
CUX1-221ENST00000622516 COPAP53621 1224 aa10.68□□□□□ -0.7
CUX1-221ENST00000622516 USP41Q3LFD5 358 aa10.68□□□□□ -0.7
CUX1-221ENST00000622516 PARP15Q460N3 678 aa10.68□□□□□ -0.7
CUX1-221ENST00000622516 SH2D4BQ5SQS7 431 aa10.68□□□□□ -0.7
CUX1-221ENST00000622516 C1QTNF12Q5T7M4 302 aa10.68□□□□□ -0.7
CUX1-221ENST00000622516 C1orf146Q5VVC0 180 aa10.68□□□□□ -0.7
CUX1-221ENST00000622516 SEL1L3Q68CR1 1132 aa10.68□□□□□ -0.7
CUX1-221ENST00000622516 SNX31Q8N9S9 440 aa10.68□□□□□ -0.7
CUX1-221ENST00000622516 PTCD2Q8WV60 388 aaKnown RBP10.68□□□□□ -0.7
CUX1-221ENST00000622516 NRG4Q8WWG1 115 aa10.68□□□□□ -0.7
CUX1-221ENST00000622516 STMN2Q93045 179 aa10.68□□□□□ -0.7
CUX1-221ENST00000622516 CATSPER2Q96P56 530 aa10.68□□□□□ -0.7
CUX1-221ENST00000622516 SLC22A12Q96S37 553 aa10.68□□□□□ -0.7
CUX1-221ENST00000622516 ZBED2Q9BTP6 218 aa10.68□□□□□ -0.7
CUX1-221ENST00000622516 MRPL46Q9H2W6 279 aaKnown RBP10.68□□□□□ -0.7
CUX1-221ENST00000622516 DCLRE1BQ9H816 532 aa10.68□□□□□ -0.7
CUX1-221ENST00000622516 TRPC7Q9HCX4 862 aa10.68□□□□□ -0.7
CUX1-221ENST00000622516 VWA7Q9Y334 891 aa10.68□□□□□ -0.7
CUX1-221ENST00000622516 SZT2Q5T011 3432 aa10.67□□□□□ -0.7
CUX1-221ENST00000622516 A0A088AWK7 358 aa10.67□□□□□ -0.7
CUX1-221ENST00000622516 LOC285095A0A1B0GVY8 99 aa10.67□□□□□ -0.7
CUX1-221ENST00000622516 CCDC162PA2VCL2 907 aa10.67□□□□□ -0.7
CUX1-221ENST00000622516 AIM2O14862 343 aa10.67□□□□□ -0.7
CUX1-221ENST00000622516 FKTNO75072 461 aa10.67□□□□□ -0.7
CUX1-221ENST00000622516 COQ9O75208 318 aa10.67□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms