RNA–Protein interactions for RNA: ENST00000599575.5

SHKBP1-219, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 810 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-219ENST00000599575 PDCD6IPQ8WUM4 868 aaKnown RBP16.67■□□□□ 0.26
SHKBP1-219ENST00000599575 MAGOHBQ96A72 148 aaKnown RBP16.67■□□□□ 0.26
SHKBP1-219ENST00000599575 MS4A14Q96JA4 679 aa16.67■□□□□ 0.26
SHKBP1-219ENST00000599575 MCCC1Q96RQ3 725 aaPredicted RBP16.67■□□□□ 0.26
SHKBP1-219ENST00000599575 RBM15Q96T37 977 aaKnown RBP eCLIP16.67■□□□□ 0.26
SHKBP1-219ENST00000599575 TUBB2BQ9BVA1 445 aa16.67■□□□□ 0.26
SHKBP1-219ENST00000599575 CD93Q9NPY3 652 aa16.67■□□□□ 0.26
SHKBP1-219ENST00000599575 PAK5Q9P286 719 aa16.67■□□□□ 0.26
SHKBP1-219ENST00000599575 SUSD2Q9UGT4 822 aa16.67■□□□□ 0.26
SHKBP1-219ENST00000599575 SMG5Q9UPR3 1016 aaKnown RBP16.67■□□□□ 0.26
SHKBP1-219ENST00000599575 INVSQ9Y283 1065 aa16.67■□□□□ 0.26
SHKBP1-219ENST00000599575 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa16.66■□□□□ 0.26
SHKBP1-219ENST00000599575 ANKRD66B4E2M5 251 aa16.66■□□□□ 0.26
SHKBP1-219ENST00000599575 CCDC188H7C350 402 aa16.66■□□□□ 0.26
SHKBP1-219ENST00000599575 LRP3O75074 770 aa16.66■□□□□ 0.26
SHKBP1-219ENST00000599575 PHF2O75151 1096 aa16.66■□□□□ 0.26
SHKBP1-219ENST00000599575 GJB3O75712 270 aa16.66■□□□□ 0.26
SHKBP1-219ENST00000599575 RETP07949 1114 aa16.66■□□□□ 0.26
SHKBP1-219ENST00000599575 CYP2A6P11509 494 aaPredicted RBP16.66■□□□□ 0.26
SHKBP1-219ENST00000599575 CD27P26842 260 aa16.66■□□□□ 0.26
SHKBP1-219ENST00000599575 MMP12P39900 470 aa16.66■□□□□ 0.26
SHKBP1-219ENST00000599575 EPHB1P54762 984 aa16.66■□□□□ 0.26
SHKBP1-219ENST00000599575 NHLH1Q02575 133 aa16.66■□□□□ 0.26
SHKBP1-219ENST00000599575 SETMARQ53H47 684 aaPredicted RBP16.66■□□□□ 0.26
SHKBP1-219ENST00000599575 GSTA5Q7RTV2 222 aa16.66■□□□□ 0.26
SHKBP1-219ENST00000599575 HORMAD1Q86X24 394 aa16.66■□□□□ 0.26
SHKBP1-219ENST00000599575 TMEFF1Q8IYR6 380 aa16.66■□□□□ 0.26
SHKBP1-219ENST00000599575 FAM174AQ8TBP5 190 aa16.66■□□□□ 0.26
SHKBP1-219ENST00000599575 CCDC110Q8TBZ0 833 aa16.66■□□□□ 0.26
SHKBP1-219ENST00000599575 PIH1D2Q8WWB5 315 aa16.66■□□□□ 0.26
SHKBP1-219ENST00000599575 IFT43Q96FT9 208 aa16.66■□□□□ 0.26
SHKBP1-219ENST00000599575 C16orf45Q96MC5 204 aaPredicted RBP16.66■□□□□ 0.26
SHKBP1-219ENST00000599575 NSMCE3Q96MG7 304 aa16.66■□□□□ 0.26
SHKBP1-219ENST00000599575 HSPA12BQ96MM6 686 aa16.66■□□□□ 0.26
SHKBP1-219ENST00000599575 LYSMD1Q96S90 227 aa16.66■□□□□ 0.26
SHKBP1-219ENST00000599575 C1QTNF7Q9BXJ2 289 aa16.66■□□□□ 0.26
SHKBP1-219ENST00000599575 PCDH12Q9NPG4 1184 aa16.66■□□□□ 0.26
SHKBP1-219ENST00000599575 A0A0J9YYE9 177 aa16.65■□□□□ 0.26
SHKBP1-219ENST00000599575 LOC285095A0A1B0GVY8 99 aa16.65■□□□□ 0.26
SHKBP1-219ENST00000599575 TTC24A2A3L6 582 aaPredicted RBP16.65■□□□□ 0.26
SHKBP1-219ENST00000599575 MEI4A8MW99 385 aa16.65■□□□□ 0.26
SHKBP1-219ENST00000599575 PRR5-ARHGAP8B1AHC4 643 aa16.65■□□□□ 0.26
SHKBP1-219ENST00000599575 PSMD11O00231 422 aa16.65■□□□□ 0.26
SHKBP1-219ENST00000599575 ZNF185O15231 689 aa16.65■□□□□ 0.26
SHKBP1-219ENST00000599575 FOXD2O60548 495 aaPredicted RBP16.65■□□□□ 0.26
SHKBP1-219ENST00000599575 PCDH8O95206 1070 aa16.65■□□□□ 0.26
SHKBP1-219ENST00000599575 EPN2O95208 641 aa16.65■□□□□ 0.26
SHKBP1-219ENST00000599575 NDST3O95803 873 aa16.65■□□□□ 0.26
SHKBP1-219ENST00000599575 GAS8O95995 478 aa16.65■□□□□ 0.26
SHKBP1-219ENST00000599575 TRBC1P01850 177 aa16.65■□□□□ 0.26
SHKBP1-219ENST00000599575 GNSP15586 552 aa16.65■□□□□ 0.26
SHKBP1-219ENST00000599575 ZNF30P17039 623 aa16.65■□□□□ 0.26
SHKBP1-219ENST00000599575 HLA-DPA1P20036 260 aa16.65■□□□□ 0.26
SHKBP1-219ENST00000599575 FDFT1P37268 417 aa16.65■□□□□ 0.26
SHKBP1-219ENST00000599575 ABL2P42684 1182 aa16.65■□□□□ 0.26
SHKBP1-219ENST00000599575 SNX1Q13596 522 aa16.65■□□□□ 0.26
SHKBP1-219ENST00000599575 AGERQ15109 404 aa16.65■□□□□ 0.26
SHKBP1-219ENST00000599575 TMEM259Q4ZIN3 620 aa16.65■□□□□ 0.26
SHKBP1-219ENST00000599575 PEAR1Q5VY43 1037 aaPredicted RBP16.65■□□□□ 0.26
SHKBP1-219ENST00000599575 DPPA4Q7L190 304 aa16.65■□□□□ 0.26
SHKBP1-219ENST00000599575 SYT12Q8IV01 421 aa16.65■□□□□ 0.26
SHKBP1-219ENST00000599575 CEP76Q8TAP6 659 aa16.65■□□□□ 0.26
SHKBP1-219ENST00000599575 CXorf40AQ8TE69 158 aa16.65■□□□□ 0.26
SHKBP1-219ENST00000599575 BIRC7Q96CA5 298 aa16.65■□□□□ 0.26
SHKBP1-219ENST00000599575 TRIB3Q96RU7 358 aa16.65■□□□□ 0.26
SHKBP1-219ENST00000599575 FSD1LQ9BXM9 530 aa16.65■□□□□ 0.26
SHKBP1-219ENST00000599575 C6orf106Q9H6K1 298 aaPredicted RBP16.65■□□□□ 0.26
SHKBP1-219ENST00000599575 C10orf88Q9H8K7 445 aa16.65■□□□□ 0.26
SHKBP1-219ENST00000599575 GMEB2Q9UKD1 530 aa16.65■□□□□ 0.26
SHKBP1-219ENST00000599575 FANCMQ8IYD8 2048 aa16.64■□□□□ 0.25
SHKBP1-219ENST00000599575 A0A1W2PPC4 97 aa16.64■□□□□ 0.25
SHKBP1-219ENST00000599575 A0A1W2PQU0 124 aa16.64■□□□□ 0.25
SHKBP1-219ENST00000599575 FAM47DPA6NHR8 397 aa16.64■□□□□ 0.25
SHKBP1-219ENST00000599575 PLK4O00444 970 aa16.64■□□□□ 0.25
SHKBP1-219ENST00000599575 FANCGO15287 622 aa16.64■□□□□ 0.25
SHKBP1-219ENST00000599575 FSBPO95073 299 aa16.64■□□□□ 0.25
SHKBP1-219ENST00000599575 MT-CYBP00156 380 aaPredicted RBP16.64■□□□□ 0.25
SHKBP1-219ENST00000599575 PRLP01236 227 aa16.64■□□□□ 0.25
SHKBP1-219ENST00000599575 IFNB1P01574 187 aa16.64■□□□□ 0.25
SHKBP1-219ENST00000599575 IGHV4-34P06331 123 aa16.64■□□□□ 0.25
SHKBP1-219ENST00000599575 COILP38432 576 aaPredicted RBP16.64■□□□□ 0.25
SHKBP1-219ENST00000599575 DHPSP49366 369 aaPredicted RBP16.64■□□□□ 0.25
SHKBP1-219ENST00000599575 GDF10P55107 478 aa16.64■□□□□ 0.25
SHKBP1-219ENST00000599575 WNT3AP56704 352 aa16.64■□□□□ 0.25
SHKBP1-219ENST00000599575 SGCGQ13326 291 aa16.64■□□□□ 0.25
SHKBP1-219ENST00000599575 IHHQ14623 411 aa16.64■□□□□ 0.25
SHKBP1-219ENST00000599575 CCDC137Q6PK04 289 aaKnown RBP16.64■□□□□ 0.25
SHKBP1-219ENST00000599575 KDELC1Q6UW63 502 aa16.64■□□□□ 0.25
SHKBP1-219ENST00000599575 CYP2U1Q7Z449 544 aa16.64■□□□□ 0.25
SHKBP1-219ENST00000599575 ZSWIM9Q86XI8 627 aa16.64■□□□□ 0.25
SHKBP1-219ENST00000599575 SLC41A1Q8IVJ1 513 aa16.64■□□□□ 0.25
SHKBP1-219ENST00000599575 DENND6BQ8NEG7 585 aa16.64■□□□□ 0.25
SHKBP1-219ENST00000599575 SPATA22Q8NHS9 363 aa16.64■□□□□ 0.25
SHKBP1-219ENST00000599575 CCHCR1Q8TD31 782 aa16.64■□□□□ 0.25
SHKBP1-219ENST00000599575 SLCO2A1Q92959 643 aa16.64■□□□□ 0.25
SHKBP1-219ENST00000599575 OXNAD1Q96HP4 312 aaPredicted RBP16.64■□□□□ 0.25
SHKBP1-219ENST00000599575 LENG8Q96PV6 779 aaPredicted RBP16.64■□□□□ 0.25
SHKBP1-219ENST00000599575 MLPHQ9BV36 600 aaPredicted RBP16.64■□□□□ 0.25
SHKBP1-219ENST00000599575 C1QTNF2Q9BXJ5 285 aa16.64■□□□□ 0.25
SHKBP1-219ENST00000599575 AP1M1Q9BXS5 423 aa16.64■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms