RNA–Protein interactions for RNA: ENST00000563418.2

CLK3-212, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 10,498 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-212ENST00000563418 GPN2Q9H9Y4 310 aaPredicted RBP6.29□□□□□ -1.4
CLK3-212ENST00000563418 MAT2BQ9NZL9 334 aa6.29□□□□□ -1.4
CLK3-212ENST00000563418 SLC17A7Q9P2U7 560 aa6.29□□□□□ -1.4
CLK3-212ENST00000563418 BMP3P12645 472 aa6.29□□□□□ -1.4
CLK3-212ENST00000563418 PTP4A2Q12974 167 aa6.29□□□□□ -1.4
CLK3-212ENST00000563418 PITRM1Q5JRX3 1037 aa6.29□□□□□ -1.4
CLK3-212ENST00000563418 PADI6Q6TGC4 694 aa6.29□□□□□ -1.4
CLK3-212ENST00000563418 CARNMT1Q8N4J0 409 aa6.29□□□□□ -1.4
CLK3-212ENST00000563418 DEDD2Q8WXF8 326 aa6.29□□□□□ -1.4
CLK3-212ENST00000563418 CCDC17Q96LX7 622 aa6.29□□□□□ -1.4
CLK3-212ENST00000563418 MSTO1Q9BUK6 570 aa6.29□□□□□ -1.4
CLK3-212ENST00000563418 TBC1D30Q9Y2I9 924 aa6.29□□□□□ -1.4
CLK3-212ENST00000563418 IRAK3Q9Y616 596 aa6.29□□□□□ -1.4
CLK3-212ENST00000563418 CROCCQ5TZA2 2017 aa6.29□□□□□ -1.4
CLK3-212ENST00000563418 SETD1AO15047 1707 aaKnown RBP6.29□□□□□ -1.4
CLK3-212ENST00000563418 DDX39AO00148 427 aaKnown RBP6.29□□□□□ -1.4
CLK3-212ENST00000563418 TRAPPC2P0DI81 140 aa6.29□□□□□ -1.4
CLK3-212ENST00000563418 TRAPPC2BP0DI82 140 aa6.29□□□□□ -1.4
CLK3-212ENST00000563418 CBX5P45973 191 aa6.29□□□□□ -1.4
CLK3-212ENST00000563418 SLC7A2P52569 658 aa6.29□□□□□ -1.4
CLK3-212ENST00000563418 PPATQ06203 517 aa6.29□□□□□ -1.4
CLK3-212ENST00000563418 BMPR2Q13873 1038 aa6.29□□□□□ -1.4
CLK3-212ENST00000563418 SNRNP35Q16560 246 aaKnown RBP6.29□□□□□ -1.4
CLK3-212ENST00000563418 ERMP1Q7Z2K6 904 aa6.29□□□□□ -1.4
CLK3-212ENST00000563418 ACTL9Q8TC94 416 aa6.29□□□□□ -1.4
CLK3-212ENST00000563418 SLC7A3Q8WY07 619 aa6.29□□□□□ -1.4
CLK3-212ENST00000563418 ATP6V1G2-DDX39BF2Z307 99 aa6.29□□□□□ -1.4
CLK3-212ENST00000563418 NRP2O60462 931 aa6.29□□□□□ -1.4
CLK3-212ENST00000563418 METTL18O95568 372 aa6.29□□□□□ -1.4
CLK3-212ENST00000563418 SLC2A2P11168 524 aaPredicted RBP6.29□□□□□ -1.4
CLK3-212ENST00000563418 PTX3P26022 381 aaPredicted RBP6.29□□□□□ -1.4
CLK3-212ENST00000563418 PITPNAQ00169 270 aa6.29□□□□□ -1.4
CLK3-212ENST00000563418 DSC3Q14574 896 aa6.29□□□□□ -1.4
CLK3-212ENST00000563418 ZBTB46Q86UZ6 589 aa6.29□□□□□ -1.4
CLK3-212ENST00000563418 MIB1Q86YT6 1006 aa6.29□□□□□ -1.4
CLK3-212ENST00000563418 CLIP4Q8N3C7 705 aa6.29□□□□□ -1.4
CLK3-212ENST00000563418 UTP15Q8TED0 518 aaKnown RBP6.29□□□□□ -1.4
CLK3-212ENST00000563418 C7orf43Q8WVR3 580 aa6.29□□□□□ -1.4
CLK3-212ENST00000563418 CNOT6Q9ULM6 557 aaKnown RBP6.29□□□□□ -1.4
CLK3-212ENST00000563418 TCRBV9S1A1TA0A576 114 aa6.29□□□□□ -1.4
CLK3-212ENST00000563418 HPRP00739 348 aa6.29□□□□□ -1.4
CLK3-212ENST00000563418 LCN1P31025 176 aa6.29□□□□□ -1.4
CLK3-212ENST00000563418 OCLNQ16625 522 aa6.29□□□□□ -1.4
CLK3-212ENST00000563418 SULT1C3Q6IMI6 304 aa6.29□□□□□ -1.4
CLK3-212ENST00000563418 ZCCHC23Q6ZST2 131 aa6.29□□□□□ -1.4
CLK3-212ENST00000563418 ADGRD2Q7Z7M1 963 aa6.29□□□□□ -1.4
CLK3-212ENST00000563418 FAM126BQ8IXS8 530 aa6.29□□□□□ -1.4
CLK3-212ENST00000563418 PCDH20Q8N6Y1 951 aaKnown RBP6.29□□□□□ -1.4
CLK3-212ENST00000563418 HEXIM2Q96MH2 286 aaKnown RBP6.29□□□□□ -1.4
CLK3-212ENST00000563418 PELOQ9BRX2 385 aaKnown RBP6.29□□□□□ -1.4
CLK3-212ENST00000563418 UFSP2Q9NUQ7 469 aa6.29□□□□□ -1.4
CLK3-212ENST00000563418 COL3A1P02461 1466 aaPredicted RBP6.29□□□□□ -1.4
CLK3-212ENST00000563418 ERI2A8K979 691 aaKnown RBP6.28□□□□□ -1.4
CLK3-212ENST00000563418 CLTBP09497 229 aa6.28□□□□□ -1.4
CLK3-212ENST00000563418 RHDQ02161 417 aa6.28□□□□□ -1.4
CLK3-212ENST00000563418 ZIK1Q3SY52 487 aaPredicted RBP6.28□□□□□ -1.4
CLK3-212ENST00000563418 SH2D3AQ9BRG2 576 aa6.28□□□□□ -1.4
CLK3-212ENST00000563418 FAM86C1Q9NVL1 165 aa6.28□□□□□ -1.4
CLK3-212ENST00000563418 MAN2B2Q9Y2E5 1009 aa6.28□□□□□ -1.4
CLK3-212ENST00000563418 ZCCHC11Q5TAX3 1644 aaKnown RBP6.28□□□□□ -1.4
CLK3-212ENST00000563418 A0A096LPK6 155 aa6.28□□□□□ -1.4
CLK3-212ENST00000563418 UBAP1LF5GYI3 381 aa6.28□□□□□ -1.4
CLK3-212ENST00000563418 UBXN8O00124 270 aa6.28□□□□□ -1.4
CLK3-212ENST00000563418 KPNA5O15131 536 aa6.28□□□□□ -1.4
CLK3-212ENST00000563418 PVALBP20472 110 aaPredicted RBP6.28□□□□□ -1.4
CLK3-212ENST00000563418 CYP3A5P20815 502 aa6.28□□□□□ -1.4
CLK3-212ENST00000563418 FOXM1Q08050 763 aa6.28□□□□□ -1.4
CLK3-212ENST00000563418 ANKS6Q68DC2 871 aa6.28□□□□□ -1.4
CLK3-212ENST00000563418 EFHBQ8N7U6 833 aa6.28□□□□□ -1.4
CLK3-212ENST00000563418 ANKRD52Q8NB46 1076 aa6.28□□□□□ -1.4
CLK3-212ENST00000563418 TTYH2Q9BSA4 534 aa6.28□□□□□ -1.4
CLK3-212ENST00000563418 EBF1Q9UH73 591 aa6.28□□□□□ -1.4
CLK3-212ENST00000563418 FRMPD2Q68DX3 1309 aaPredicted RBP6.28□□□□□ -1.4
CLK3-212ENST00000563418 ZC3H4Q9UPT8 1303 aaKnown RBP6.28□□□□□ -1.4
CLK3-212ENST00000563418 KAT6AQ92794 2004 aa6.28□□□□□ -1.4
CLK3-212ENST00000563418 A0A0X1KG70 313 aa6.28□□□□□ -1.4
CLK3-212ENST00000563418 ACOX3O15254 700 aa6.28□□□□□ -1.4
CLK3-212ENST00000563418 HTRA2O43464 458 aaPredicted RBP6.28□□□□□ -1.4
CLK3-212ENST00000563418 SOX30O94993 753 aa6.28□□□□□ -1.4
CLK3-212ENST00000563418 PIGNO95427 931 aa6.28□□□□□ -1.4
CLK3-212ENST00000563418 ATP12AP54707 1039 aa6.28□□□□□ -1.4
CLK3-212ENST00000563418 WDR4P57081 412 aaKnown RBP6.28□□□□□ -1.4
CLK3-212ENST00000563418 C10orf107Q8IVU9 208 aa6.28□□□□□ -1.4
CLK3-212ENST00000563418 SLC15A3Q8IY34 581 aa6.28□□□□□ -1.4
CLK3-212ENST00000563418 SLC47A1Q96FL8 570 aa6.28□□□□□ -1.4
CLK3-212ENST00000563418 TRNT1Q96Q11 434 aaKnown RBP6.28□□□□□ -1.4
CLK3-212ENST00000563418 EPB41L4BQ9H329 900 aa6.28□□□□□ -1.4
CLK3-212ENST00000563418 FOLH1BQ9HBA9 442 aa6.28□□□□□ -1.4
CLK3-212ENST00000563418 GABBR1Q9UBS5 961 aa6.28□□□□□ -1.4
CLK3-212ENST00000563418 FABP12A6NFH5 140 aa6.28□□□□□ -1.4
CLK3-212ENST00000563418 CLCA1A8K7I4 914 aa6.28□□□□□ -1.4
CLK3-212ENST00000563418 CHST10O43529 356 aa6.28□□□□□ -1.4
CLK3-212ENST00000563418 PGK1P00558 417 aa6.28□□□□□ -1.4
CLK3-212ENST00000563418 CTSKP43235 329 aa6.28□□□□□ -1.4
CLK3-212ENST00000563418 POU4F1Q01851 419 aa6.28□□□□□ -1.4
CLK3-212ENST00000563418 GPRC6AQ5T6X5 926 aa6.28□□□□□ -1.4
CLK3-212ENST00000563418 SPESP1Q6UW49 350 aa6.28□□□□□ -1.4
CLK3-212ENST00000563418 MRPL57Q9BQC6 102 aaKnown RBP6.28□□□□□ -1.4
CLK3-212ENST00000563418 RC3H2Q9HBD1 1191 aaKnown RBP6.28□□□□□ -1.4
CLK3-212ENST00000563418 DPP3Q9NY33 737 aa6.28□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms