RNA–Protein interactions for RNA: ENST00000560628.1

LDLR-214, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 535 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-214ENST00000560628 GRM3Q14832 879 aa10.3□□□□□ -0.76
LDLR-214ENST00000560628 NR0B2Q15466 257 aa10.3□□□□□ -0.76
LDLR-214ENST00000560628 NFKBIBQ15653 356 aa10.3□□□□□ -0.76
LDLR-214ENST00000560628 TDRD12Q587J7 1177 aaKnown RBP10.3□□□□□ -0.76
LDLR-214ENST00000560628 CDCP2Q5VXM1 449 aa10.3□□□□□ -0.76
LDLR-214ENST00000560628 TXNRD3NBQ6F5E7 133 aa10.3□□□□□ -0.76
LDLR-214ENST00000560628 BRAT1Q6PJG6 821 aa10.3□□□□□ -0.76
LDLR-214ENST00000560628 ENPP7Q6UWV6 458 aa10.3□□□□□ -0.76
LDLR-214ENST00000560628 HID1Q8IV36 788 aa10.3□□□□□ -0.76
LDLR-214ENST00000560628 PSTKQ8IV42 348 aaKnown RBP10.3□□□□□ -0.76
LDLR-214ENST00000560628 FGF11Q92914 225 aa10.3□□□□□ -0.76
LDLR-214ENST00000560628 TRIM11Q96F44 468 aa10.3□□□□□ -0.76
LDLR-214ENST00000560628 TUBGCP5Q96RT8 1024 aa10.3□□□□□ -0.76
LDLR-214ENST00000560628 EIF3CQ99613 913 aaKnown RBP10.3□□□□□ -0.76
LDLR-214ENST00000560628 APOOQ9BUR5 198 aa10.3□□□□□ -0.76
LDLR-214ENST00000560628 LRRC61Q9BV99 259 aa10.3□□□□□ -0.76
LDLR-214ENST00000560628 CLPBQ9H078 707 aa10.3□□□□□ -0.76
LDLR-214ENST00000560628 ATP13A3Q9H7F0 1226 aa10.3□□□□□ -0.76
LDLR-214ENST00000560628 USP29Q9HBJ7 922 aa10.3□□□□□ -0.76
LDLR-214ENST00000560628 MRPL47Q9HD33 250 aaKnown RBP10.3□□□□□ -0.76
LDLR-214ENST00000560628 ETNK2Q9NVF9 386 aa10.3□□□□□ -0.76
LDLR-214ENST00000560628 EVA1BQ9NVM1 165 aa10.3□□□□□ -0.76
LDLR-214ENST00000560628 GULP1Q9UBP9 304 aa10.3□□□□□ -0.76
LDLR-214ENST00000560628 SALL4Q9UJQ4 1053 aa10.3□□□□□ -0.76
LDLR-214ENST00000560628 ATP8A1Q9Y2Q0 1164 aa10.3□□□□□ -0.76
LDLR-214ENST00000560628 OR1A2Q9Y585 309 aa10.3□□□□□ -0.76
LDLR-214ENST00000560628 SCINQ9Y6U3 715 aa10.3□□□□□ -0.76
LDLR-214ENST00000560628 MYLKQ15746 1914 aa10.3□□□□□ -0.76
LDLR-214ENST00000560628 LMO7DNF2Z398 122 aa10.29□□□□□ -0.76
LDLR-214ENST00000560628 TPP1O14773 563 aa10.29□□□□□ -0.76
LDLR-214ENST00000560628 USP12O75317 370 aa10.29□□□□□ -0.76
LDLR-214ENST00000560628 GP1BAP07359 652 aa10.29□□□□□ -0.76
LDLR-214ENST00000560628 MYBL1P10243 752 aa10.29□□□□□ -0.76
LDLR-214ENST00000560628 RARAP10276 462 aa10.29□□□□□ -0.76
LDLR-214ENST00000560628 CTSEP14091 401 aa10.29□□□□□ -0.76
LDLR-214ENST00000560628 SERPINA4P29622 427 aa10.29□□□□□ -0.76
LDLR-214ENST00000560628 PCK1P35558 622 aa10.29□□□□□ -0.76
LDLR-214ENST00000560628 MMP12P39900 470 aa10.29□□□□□ -0.76
LDLR-214ENST00000560628 ARL4AP40617 200 aa10.29□□□□□ -0.76
LDLR-214ENST00000560628 ABCG1P45844 678 aa10.29□□□□□ -0.76
LDLR-214ENST00000560628 PEX5P50542 639 aa10.29□□□□□ -0.76
LDLR-214ENST00000560628 NSUN2Q08J23 767 aaKnown RBP eCLIP10.29□□□□□ -0.76
LDLR-214ENST00000560628 SLC10A7Q0GE19 358 aa10.29□□□□□ -0.76
LDLR-214ENST00000560628 CCDC173Q0VFZ6 552 aa10.29□□□□□ -0.76
LDLR-214ENST00000560628 COL9A2Q14055 689 aaPredicted RBP10.29□□□□□ -0.76
LDLR-214ENST00000560628 LBRQ14739 615 aaKnown RBP10.29□□□□□ -0.76
LDLR-214ENST00000560628 ALG11Q2TAA5 492 aa10.29□□□□□ -0.76
LDLR-214ENST00000560628 SOWAHCQ53LP3 525 aaPredicted RBP10.29□□□□□ -0.76
LDLR-214ENST00000560628 BOLA3Q53S33 107 aa10.29□□□□□ -0.76
LDLR-214ENST00000560628 FIGNQ5HY92 759 aa10.29□□□□□ -0.76
LDLR-214ENST00000560628 PERM1Q5SV97 790 aa10.29□□□□□ -0.76
LDLR-214ENST00000560628 HGSNATQ68CP4 663 aa10.29□□□□□ -0.76
LDLR-214ENST00000560628 MACC1Q6ZN28 852 aa10.29□□□□□ -0.76
LDLR-214ENST00000560628 LRRC69Q6ZNQ3 347 aa10.29□□□□□ -0.76
LDLR-214ENST00000560628 POLNQ7Z5Q5 900 aa10.29□□□□□ -0.76
LDLR-214ENST00000560628 SLC35F3Q8IY50 421 aa10.29□□□□□ -0.76
LDLR-214ENST00000560628 PLA2G15Q8NCC3 412 aa10.29□□□□□ -0.76
LDLR-214ENST00000560628 NAF1Q96HR8 494 aaKnown RBP10.29□□□□□ -0.76
LDLR-214ENST00000560628 DEPDC7Q96QD5 511 aa10.29□□□□□ -0.76
LDLR-214ENST00000560628 THAP2Q9H0W7 228 aa10.29□□□□□ -0.76
LDLR-214ENST00000560628 STAU2Q9NUL3 570 aaKnown RBP eCLIP10.29□□□□□ -0.76
LDLR-214ENST00000560628 SIRPGQ9P1W8 387 aa10.29□□□□□ -0.76
LDLR-214ENST00000560628 SEPT3Q9UH03 358 aa10.29□□□□□ -0.76
LDLR-214ENST00000560628 DOLKQ9UPQ8 538 aa10.29□□□□□ -0.76
LDLR-214ENST00000560628 RAI2Q9Y5P3 530 aa10.29□□□□□ -0.76
LDLR-214ENST00000560628 WDFY3Q8IZQ1 3526 aa10.29□□□□□ -0.76
LDLR-214ENST00000560628 ZFYVE26Q68DK2 2539 aa10.29□□□□□ -0.76
LDLR-214ENST00000560628 ANKRD11Q6UB99 2663 aaPredicted RBP10.29□□□□□ -0.76
LDLR-214ENST00000560628 A0A087X0T9 212 aa10.28□□□□□ -0.76
LDLR-214ENST00000560628 EME2A4GXA9 379 aaPredicted RBP10.28□□□□□ -0.76
LDLR-214ENST00000560628 TMEM110-MUSTN1A8MSY1 372 aa10.28□□□□□ -0.76
LDLR-214ENST00000560628 TOR1BO14657 336 aa10.28□□□□□ -0.76
LDLR-214ENST00000560628 RRP8O43159 456 aaKnown RBP10.28□□□□□ -0.76
LDLR-214ENST00000560628 RECQL5O94762 991 aaPredicted RBP10.28□□□□□ -0.76
LDLR-214ENST00000560628 FAM228BP0C875 321 aa10.28□□□□□ -0.76
LDLR-214ENST00000560628 HTR1BP28222 390 aa10.28□□□□□ -0.76
LDLR-214ENST00000560628 ACTN2P35609 894 aa10.28□□□□□ -0.76
LDLR-214ENST00000560628 PBX1P40424 430 aa10.28□□□□□ -0.76
LDLR-214ENST00000560628 SSR1P43307 286 aaKnown RBP10.28□□□□□ -0.76
LDLR-214ENST00000560628 RPIAP49247 311 aa10.28□□□□□ -0.76
LDLR-214ENST00000560628 RENBPP51606 427 aa10.28□□□□□ -0.76
LDLR-214ENST00000560628 ZNF135P52742 658 aaPredicted RBP10.28□□□□□ -0.76
LDLR-214ENST00000560628 HK3P52790 923 aa10.28□□□□□ -0.76
LDLR-214ENST00000560628 SRP54P61011 504 aaKnown RBP10.28□□□□□ -0.76
LDLR-214ENST00000560628 TPM4P67936 248 aa10.28□□□□□ -0.76
LDLR-214ENST00000560628 GABREP78334 506 aa10.28□□□□□ -0.76
LDLR-214ENST00000560628 RALGDSQ12967 914 aa10.28□□□□□ -0.76
LDLR-214ENST00000560628 PIGHQ14442 188 aaPredicted RBP10.28□□□□□ -0.76
LDLR-214ENST00000560628 RFTN1Q14699 578 aaPredicted RBP10.28□□□□□ -0.76
LDLR-214ENST00000560628 NFATC4Q14934 902 aa10.28□□□□□ -0.76
LDLR-214ENST00000560628 ACAP1Q15027 740 aa10.28□□□□□ -0.76
LDLR-214ENST00000560628 DPYSL2Q16555 572 aa10.28□□□□□ -0.76
LDLR-214ENST00000560628 C6orf132Q5T0Z8 1188 aa10.28□□□□□ -0.76
LDLR-214ENST00000560628 TMCO4Q5TGY1 634 aa10.28□□□□□ -0.76
LDLR-214ENST00000560628 KCTD16Q68DU8 428 aa10.28□□□□□ -0.76
LDLR-214ENST00000560628 TMCO3Q6UWJ1 677 aa10.28□□□□□ -0.76
LDLR-214ENST00000560628 LIPIQ6XZB0 460 aa10.28□□□□□ -0.76
LDLR-214ENST00000560628 PGBD5Q8N414 524 aa10.28□□□□□ -0.76
LDLR-214ENST00000560628 LZTR1Q8N653 840 aa10.28□□□□□ -0.76
LDLR-214ENST00000560628 PDCD6IPQ8WUM4 868 aaKnown RBP10.28□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 70.7 ms