RNA–Protein interactions for RNA: ENST00000554975.5

SHMT2-216, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 780 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-216ENST00000554975 POC1B-GALNT4F8VUJ3 575 aa11.29□□□□□ -0.6
SHMT2-216ENST00000554975 H3BRJ5 948 aa11.29□□□□□ -0.6
SHMT2-216ENST00000554975 FLRT2O43155 660 aa11.29□□□□□ -0.6
SHMT2-216ENST00000554975 CER1O95813 267 aa11.29□□□□□ -0.6
SHMT2-216ENST00000554975 INHBAP08476 426 aa11.29□□□□□ -0.6
SHMT2-216ENST00000554975 MBL2P11226 248 aaPredicted RBP11.29□□□□□ -0.6
SHMT2-216ENST00000554975 NCAM1P13591 858 aa11.29□□□□□ -0.6
SHMT2-216ENST00000554975 TPSB2P20231 275 aa11.29□□□□□ -0.6
SHMT2-216ENST00000554975 CD6P30203 668 aa11.29□□□□□ -0.6
SHMT2-216ENST00000554975 ALDH3A1P30838 453 aa11.29□□□□□ -0.6
SHMT2-216ENST00000554975 FDFT1P37268 417 aa11.29□□□□□ -0.6
SHMT2-216ENST00000554975 SKIV2L2P42285 1042 aaKnown RBP11.29□□□□□ -0.6
SHMT2-216ENST00000554975 MSH2P43246 934 aa11.29□□□□□ -0.6
SHMT2-216ENST00000554975 PPP3CCP48454 512 aa11.29□□□□□ -0.6
SHMT2-216ENST00000554975 SLC5A3P53794 718 aa11.29□□□□□ -0.6
SHMT2-216ENST00000554975 PDE4CQ08493 712 aa11.29□□□□□ -0.6
SHMT2-216ENST00000554975 NAB1Q13506 487 aa11.29□□□□□ -0.6
SHMT2-216ENST00000554975 TPSAB1Q15661 275 aa11.29□□□□□ -0.6
SHMT2-216ENST00000554975 PDK4Q16654 411 aa11.29□□□□□ -0.6
SHMT2-216ENST00000554975 CDO1Q16878 200 aa11.29□□□□□ -0.6
SHMT2-216ENST00000554975 BBS9Q3SYG4 887 aa11.29□□□□□ -0.6
SHMT2-216ENST00000554975 CCDC14Q49A88 953 aa11.29□□□□□ -0.6
SHMT2-216ENST00000554975 SLC45A4Q5BKX6 768 aa11.29□□□□□ -0.6
SHMT2-216ENST00000554975 HHATQ5VTY9 493 aa11.29□□□□□ -0.6
SHMT2-216ENST00000554975 FYB2Q5VWT5 728 aa11.29□□□□□ -0.6
SHMT2-216ENST00000554975 TRPM8Q7Z2W7 1104 aa11.29□□□□□ -0.6
SHMT2-216ENST00000554975 TRIM42Q8IWZ5 723 aa11.29□□□□□ -0.6
SHMT2-216ENST00000554975 CHPFQ8IZ52 775 aa11.29□□□□□ -0.6
SHMT2-216ENST00000554975 GLIS1Q8NBF1 620 aa11.29□□□□□ -0.6
SHMT2-216ENST00000554975 FBXO36Q8NEA4 188 aa11.29□□□□□ -0.6
SHMT2-216ENST00000554975 PDZD8Q8NEN9 1154 aa11.29□□□□□ -0.6
SHMT2-216ENST00000554975 C1orf216Q8TAB5 229 aa11.29□□□□□ -0.6
SHMT2-216ENST00000554975 SCAMP5Q8TAC9 235 aa11.29□□□□□ -0.6
SHMT2-216ENST00000554975 ZNF398Q8TD17 642 aa11.29□□□□□ -0.6
SHMT2-216ENST00000554975 MGARPQ8TDB4 240 aa11.29□□□□□ -0.6
SHMT2-216ENST00000554975 LRRC8CQ8TDW0 803 aa11.29□□□□□ -0.6
SHMT2-216ENST00000554975 CCT6BQ92526 530 aa11.29□□□□□ -0.6
SHMT2-216ENST00000554975 QKIQ96PU8 341 aaKnown RBP eCLIP11.29□□□□□ -0.6
SHMT2-216ENST00000554975 PAFAH2Q99487 392 aa11.29□□□□□ -0.6
SHMT2-216ENST00000554975 HNRNPABQ99729 332 aaKnown RBP11.29□□□□□ -0.6
SHMT2-216ENST00000554975 CDC6Q99741 560 aa11.29□□□□□ -0.6
SHMT2-216ENST00000554975 SMOQ99835 787 aa11.29□□□□□ -0.6
SHMT2-216ENST00000554975 DHRS4Q9BTZ2 278 aa11.29□□□□□ -0.6
SHMT2-216ENST00000554975 NACA2Q9H009 215 aa11.29□□□□□ -0.6
SHMT2-216ENST00000554975 PNPLA8Q9NP80 782 aa11.29□□□□□ -0.6
SHMT2-216ENST00000554975 SPHK2Q9NRA0 654 aa11.29□□□□□ -0.6
SHMT2-216ENST00000554975 WSB2Q9NYS7 404 aaPredicted RBP11.29□□□□□ -0.6
SHMT2-216ENST00000554975 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP11.29□□□□□ -0.6
SHMT2-216ENST00000554975 GMIPQ9P107 970 aa11.29□□□□□ -0.6
SHMT2-216ENST00000554975 DEC1Q9P2X7 70 aa11.29□□□□□ -0.6
SHMT2-216ENST00000554975 CTNNAL1Q9UBT7 734 aa11.29□□□□□ -0.6
SHMT2-216ENST00000554975 TBK1Q9UHD2 729 aa11.29□□□□□ -0.6
SHMT2-216ENST00000554975 AP4E1Q9UPM8 1137 aa11.29□□□□□ -0.6
SHMT2-216ENST00000554975 PIEZO2Q9H5I5 2752 aa11.28□□□□□ -0.6
SHMT2-216ENST00000554975 COL12A1Q99715 3063 aa11.28□□□□□ -0.6
SHMT2-216ENST00000554975 E2F8A0AVK6 867 aa11.28□□□□□ -0.6
SHMT2-216ENST00000554975 KCNN4O15554 427 aa11.28□□□□□ -0.6
SHMT2-216ENST00000554975 PAPSS1O43252 624 aaPredicted RBP11.28□□□□□ -0.6
SHMT2-216ENST00000554975 COCHO43405 550 aa11.28□□□□□ -0.6
SHMT2-216ENST00000554975 DCTN3O75935 186 aa11.28□□□□□ -0.6
SHMT2-216ENST00000554975 ATP5HO75947 161 aa11.28□□□□□ -0.6
SHMT2-216ENST00000554975 BEST1O76090 585 aa11.28□□□□□ -0.6
SHMT2-216ENST00000554975 TMEM63AO94886 807 aa11.28□□□□□ -0.6
SHMT2-216ENST00000554975 ZSCAN5DPP0CG00 497 aa11.28□□□□□ -0.6
SHMT2-216ENST00000554975 HLA-EP13747 358 aa11.28□□□□□ -0.6
SHMT2-216ENST00000554975 CA4P22748 312 aa11.28□□□□□ -0.6
SHMT2-216ENST00000554975 RGS7P49802 495 aa11.28□□□□□ -0.6
SHMT2-216ENST00000554975 SEMG2Q02383 582 aa11.28□□□□□ -0.6
SHMT2-216ENST00000554975 CFHR1Q03591 330 aa11.28□□□□□ -0.6
SHMT2-216ENST00000554975 ANO4Q32M45 955 aa11.28□□□□□ -0.6
SHMT2-216ENST00000554975 SPDYAQ5MJ70 313 aa11.28□□□□□ -0.6
SHMT2-216ENST00000554975 UBAP2Q5T6F2 1119 aaKnown RBP11.28□□□□□ -0.6
SHMT2-216ENST00000554975 SCYL2Q6P3W7 929 aa11.28□□□□□ -0.6
SHMT2-216ENST00000554975 ADGRD1Q6QNK2 874 aa11.28□□□□□ -0.6
SHMT2-216ENST00000554975 LAYNQ6UX15 382 aa11.28□□□□□ -0.6
SHMT2-216ENST00000554975 CLEC20AQ6ZU45 233 aa11.28□□□□□ -0.6
SHMT2-216ENST00000554975 CYP4V2Q6ZWL3 525 aaPredicted RBP11.28□□□□□ -0.6
SHMT2-216ENST00000554975 CCNJLQ8IV13 435 aa11.28□□□□□ -0.6
SHMT2-216ENST00000554975 SIX6OS1Q8N1H7 587 aa11.28□□□□□ -0.6
SHMT2-216ENST00000554975 FAM71DQ8N9W8 422 aa11.28□□□□□ -0.6
SHMT2-216ENST00000554975 LSM14AQ8ND56 463 aaKnown RBP11.28□□□□□ -0.6
SHMT2-216ENST00000554975 ZMIZ2Q8NF64 920 aa11.28□□□□□ -0.6
SHMT2-216ENST00000554975 KCTD13Q8WZ19 329 aa11.28□□□□□ -0.6
SHMT2-216ENST00000554975 CENPIQ92674 756 aaPredicted RBP11.28□□□□□ -0.6
SHMT2-216ENST00000554975 MTBPQ96DY7 904 aa11.28□□□□□ -0.6
SHMT2-216ENST00000554975 P2RY11Q96G91 374 aa11.28□□□□□ -0.6
SHMT2-216ENST00000554975 ELAC2Q9BQ52 826 aaKnown RBP11.28□□□□□ -0.6
SHMT2-216ENST00000554975 EIF2B3Q9NR50 452 aaKnown RBP11.28□□□□□ -0.6
SHMT2-216ENST00000554975 FGFR1OP2Q9NVK5 253 aa11.28□□□□□ -0.6
SHMT2-216ENST00000554975 USP36Q9P275 1121 aaKnown RBP11.28□□□□□ -0.6
SHMT2-216ENST00000554975 EIF2B4Q9UI10 523 aaKnown RBP11.28□□□□□ -0.6
SHMT2-216ENST00000554975 DNMT3LQ9UJW3 386 aa11.28□□□□□ -0.6
SHMT2-216ENST00000554975 ZNF180Q9UJW8 692 aa11.28□□□□□ -0.6
SHMT2-216ENST00000554975 PCDHGB2Q9Y5G2 931 aa11.28□□□□□ -0.6
SHMT2-216ENST00000554975 CBX4O00257 560 aa11.27□□□□□ -0.61
SHMT2-216ENST00000554975 PPP1R12AO14974 1030 aaPredicted RBP11.27□□□□□ -0.61
SHMT2-216ENST00000554975 BCAT2O15382 392 aaPredicted RBP11.27□□□□□ -0.61
SHMT2-216ENST00000554975 HNRNPCL1O60812 293 aaKnown RBP11.27□□□□□ -0.61
SHMT2-216ENST00000554975 FAM155BO75949 473 aa11.27□□□□□ -0.61
SHMT2-216ENST00000554975 ASMTLO95671 621 aa11.27□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms