RNA–Protein interactions for RNA: ENST00000553949.1

SHMT2-209, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 552 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-209ENST00000553949 LPCAT1Q8NF37 534 aa12.32□□□□□ -0.44
SHMT2-209ENST00000553949 RAB7BQ96AH8 199 aa12.32□□□□□ -0.44
SHMT2-209ENST00000553949 LRRC45Q96CN5 670 aa12.32□□□□□ -0.44
SHMT2-209ENST00000553949 TOE1Q96GM8 510 aaKnown RBP12.32□□□□□ -0.44
SHMT2-209ENST00000553949 SPACA7Q96KW9 195 aa12.32□□□□□ -0.44
SHMT2-209ENST00000553949 FICDQ9BVA6 458 aa12.32□□□□□ -0.44
SHMT2-209ENST00000553949 CARD6Q9BX69 1037 aa12.32□□□□□ -0.44
SHMT2-209ENST00000553949 FSD1LQ9BXM9 530 aa12.32□□□□□ -0.44
SHMT2-209ENST00000553949 BTBD1Q9H0C5 482 aa12.32□□□□□ -0.44
SHMT2-209ENST00000553949 SGK2Q9HBY8 427 aa12.32□□□□□ -0.44
SHMT2-209ENST00000553949 PCDH12Q9NPG4 1184 aa12.32□□□□□ -0.44
SHMT2-209ENST00000553949 ASIC3Q9UHC3 531 aa12.32□□□□□ -0.44
SHMT2-209ENST00000553949 INVSQ9Y283 1065 aa12.32□□□□□ -0.44
SHMT2-209ENST00000553949 IGHV1OR15-9A0A0B4J2B8 117 aa12.31□□□□□ -0.44
SHMT2-209ENST00000553949 FAM187AA6NFU0 413 aa12.31□□□□□ -0.44
SHMT2-209ENST00000553949 ERI2A8K979 691 aaKnown RBP12.31□□□□□ -0.44
SHMT2-209ENST00000553949 ANKRD66B4E2M5 251 aa12.31□□□□□ -0.44
SHMT2-209ENST00000553949 AREL1O15033 823 aa12.31□□□□□ -0.44
SHMT2-209ENST00000553949 SPINT1O43278 529 aa12.31□□□□□ -0.44
SHMT2-209ENST00000553949 PLRG1O43660 514 aaKnown RBP12.31□□□□□ -0.44
SHMT2-209ENST00000553949 AP1G1O43747 822 aa12.31□□□□□ -0.44
SHMT2-209ENST00000553949 AGTP01019 485 aa12.31□□□□□ -0.44
SHMT2-209ENST00000553949 PRKCGP05129 697 aa12.31□□□□□ -0.44
SHMT2-209ENST00000553949 APRTP07741 180 aa12.31□□□□□ -0.44
SHMT2-209ENST00000553949 ATXN1LP0C7T5 689 aaKnown RBP12.31□□□□□ -0.44
SHMT2-209ENST00000553949 CTPS1P17812 591 aa12.31□□□□□ -0.44
SHMT2-209ENST00000553949 ITIH2P19823 946 aa12.31□□□□□ -0.44
SHMT2-209ENST00000553949 ACSL1P33121 698 aa12.31□□□□□ -0.44
SHMT2-209ENST00000553949 ADCY8P40145 1251 aa12.31□□□□□ -0.44
SHMT2-209ENST00000553949 GRIA4P48058 902 aa12.31□□□□□ -0.44
SHMT2-209ENST00000553949 EPHB1P54762 984 aa12.31□□□□□ -0.44
SHMT2-209ENST00000553949 TAS2R38P59533 333 aa12.31□□□□□ -0.44
SHMT2-209ENST00000553949 OLIG2Q13516 323 aa12.31□□□□□ -0.44
SHMT2-209ENST00000553949 SLC1A5Q15758 541 aa12.31□□□□□ -0.44
SHMT2-209ENST00000553949 QPCTQ16769 361 aa12.31□□□□□ -0.44
SHMT2-209ENST00000553949 SIRPB2Q5JXA9 342 aa12.31□□□□□ -0.44
SHMT2-209ENST00000553949 CCDC70Q6NSX1 233 aa12.31□□□□□ -0.44
SHMT2-209ENST00000553949 ERAP2Q6P179 960 aa12.31□□□□□ -0.44
SHMT2-209ENST00000553949 RANBP10Q6VN20 620 aa12.31□□□□□ -0.44
SHMT2-209ENST00000553949 NDUFAF2Q8N183 169 aa12.31□□□□□ -0.44
SHMT2-209ENST00000553949 MMGT1Q8N4V1 131 aa12.31□□□□□ -0.44
SHMT2-209ENST00000553949 SLC25A41Q8N5S1 370 aa12.31□□□□□ -0.44
SHMT2-209ENST00000553949 NOA1Q8NC60 698 aaKnown RBP12.31□□□□□ -0.44
SHMT2-209ENST00000553949 OR14C36Q8NHC7 312 aa12.31□□□□□ -0.44
SHMT2-209ENST00000553949 RMDN1Q96DB5 314 aa12.31□□□□□ -0.44
SHMT2-209ENST00000553949 TBL1YQ9BQ87 522 aa12.31□□□□□ -0.44
SHMT2-209ENST00000553949 TRIM51Q9BSJ1 452 aa12.31□□□□□ -0.44
SHMT2-209ENST00000553949 LRRC40Q9H9A6 602 aa12.31□□□□□ -0.44
SHMT2-209ENST00000553949 EIF2B3Q9NR50 452 aaKnown RBP12.31□□□□□ -0.44
SHMT2-209ENST00000553949 ZSCAN32Q9NX65 697 aa12.31□□□□□ -0.44
SHMT2-209ENST00000553949 WSB2Q9NYS7 404 aaPredicted RBP12.31□□□□□ -0.44
SHMT2-209ENST00000553949 MBD1Q9UIS9 605 aaPredicted RBP12.31□□□□□ -0.44
SHMT2-209ENST00000553949 ITM2BQ9Y287 266 aa12.31□□□□□ -0.44
SHMT2-209ENST00000553949 PPIL1Q9Y3C6 166 aa12.31□□□□□ -0.44
SHMT2-209ENST00000553949 FADS3Q9Y5Q0 445 aa12.31□□□□□ -0.44
SHMT2-209ENST00000553949 KMT2EQ8IZD2 1858 aa12.31□□□□□ -0.44
SHMT2-209ENST00000553949 CUL9Q8IWT3 2517 aa12.31□□□□□ -0.44
SHMT2-209ENST00000553949 A0A0J9YYE9 177 aa12.3□□□□□ -0.44
SHMT2-209ENST00000553949 RIOK3O14730 519 aaKnown RBP12.3□□□□□ -0.44
SHMT2-209ENST00000553949 USP12O75317 370 aa12.3□□□□□ -0.44
SHMT2-209ENST00000553949 SUN1O94901 812 aa12.3□□□□□ -0.44
SHMT2-209ENST00000553949 SEMA4FO95754 770 aa12.3□□□□□ -0.44
SHMT2-209ENST00000553949 TRBC1P01850 177 aa12.3□□□□□ -0.44
SHMT2-209ENST00000553949 ALPIP09923 528 aa12.3□□□□□ -0.44
SHMT2-209ENST00000553949 HLA-DPA1P20036 260 aa12.3□□□□□ -0.44
SHMT2-209ENST00000553949 NFKBIAP25963 317 aa12.3□□□□□ -0.44
SHMT2-209ENST00000553949 HNF1BP35680 557 aa12.3□□□□□ -0.44
SHMT2-209ENST00000553949 MAGEA6P43360 314 aa12.3□□□□□ -0.44
SHMT2-209ENST00000553949 CHRNA4P43681 627 aa12.3□□□□□ -0.44
SHMT2-209ENST00000553949 TERF1P54274 439 aa12.3□□□□□ -0.44
SHMT2-209ENST00000553949 FAM193AP78312 1265 aa12.3□□□□□ -0.44
SHMT2-209ENST00000553949 SEMG2Q02383 582 aa12.3□□□□□ -0.44
SHMT2-209ENST00000553949 ELP6Q0PNE2 266 aa12.3□□□□□ -0.44
SHMT2-209ENST00000553949 NAPEPLDQ6IQ20 393 aa12.3□□□□□ -0.44
SHMT2-209ENST00000553949 USP45Q70EL2 814 aa12.3□□□□□ -0.44
SHMT2-209ENST00000553949 GAB3Q8WWW8 586 aa12.3□□□□□ -0.44
SHMT2-209ENST00000553949 CPT1BQ92523 772 aa12.3□□□□□ -0.44
SHMT2-209ENST00000553949 SCRN2Q96FV2 425 aa12.3□□□□□ -0.44
SHMT2-209ENST00000553949 SMIM14Q96QK8 99 aa12.3□□□□□ -0.44
SHMT2-209ENST00000553949 MCCC1Q96RQ3 725 aaPredicted RBP12.3□□□□□ -0.44
SHMT2-209ENST00000553949 APOL2Q9BQE5 337 aa12.3□□□□□ -0.44
SHMT2-209ENST00000553949 KDM4CQ9H3R0 1056 aa12.3□□□□□ -0.44
SHMT2-209ENST00000553949 B4GALT6Q9UBX8 382 aa12.3□□□□□ -0.44
SHMT2-209ENST00000553949 GGT7Q9UJ14 662 aa12.3□□□□□ -0.44
SHMT2-209ENST00000553949 CACNA1IQ9P0X4 2223 aa12.3□□□□□ -0.44
SHMT2-209ENST00000553949 TCRBV7S3A2A0A539 114 aa12.29□□□□□ -0.44
SHMT2-209ENST00000553949 CAPN8A6NHC0 703 aa12.29□□□□□ -0.44
SHMT2-209ENST00000553949 NPIPB15A6NHN6 443 aaPredicted RBP12.29□□□□□ -0.44
SHMT2-209ENST00000553949 FAM47DPA6NHR8 397 aa12.29□□□□□ -0.44
SHMT2-209ENST00000553949 LRRC72A6NJI9 287 aa12.29□□□□□ -0.44
SHMT2-209ENST00000553949 NEMP1O14524 444 aa12.29□□□□□ -0.44
SHMT2-209ENST00000553949 HRO43593 1189 aa12.29□□□□□ -0.44
SHMT2-209ENST00000553949 TSPAN6O43657 245 aa12.29□□□□□ -0.44
SHMT2-209ENST00000553949 NDUFS2O75306 463 aa12.29□□□□□ -0.44
SHMT2-209ENST00000553949 RPP40O75818 363 aaKnown RBP12.29□□□□□ -0.44
SHMT2-209ENST00000553949 FGF1P05230 155 aa12.29□□□□□ -0.44
SHMT2-209ENST00000553949 CYP2A6P11509 494 aaPredicted RBP12.29□□□□□ -0.44
SHMT2-209ENST00000553949 TPSB2P20231 275 aa12.29□□□□□ -0.44
SHMT2-209ENST00000553949 BCKDHBP21953 392 aa12.29□□□□□ -0.44
SHMT2-209ENST00000553949 IVDP26440 423 aa12.29□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms