RNA–Protein interactions for RNA: ENST00000549578.5

VPS29-206, Transcript of VPS29, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS29, Length 1,523 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-206ENST00000549578 L2HGDHQ9H9P8 463 aa21.33■■□□□ 1
VPS29-206ENST00000549578 PCDH12Q9NPG4 1184 aa21.33■■□□□ 1
VPS29-206ENST00000549578 ASIC3Q9UHC3 531 aa21.33■■□□□ 1
VPS29-206ENST00000549578 ARIH1Q9Y4X5 557 aaPredicted RBP21.33■■□□□ 1
VPS29-206ENST00000549578 LOC285095A0A1B0GVY8 99 aa21.32■■□□□ 1
VPS29-206ENST00000549578 GOLGA6CA6NDK9 693 aa21.32■■□□□ 1
VPS29-206ENST00000549578 GOLGA6BA6NDN3 693 aa21.32■■□□□ 1
VPS29-206ENST00000549578 SPINT1O43278 529 aa21.32■■□□□ 1
VPS29-206ENST00000549578 USP12O75317 370 aa21.32■■□□□ 1
VPS29-206ENST00000549578 AP2A1O95782 977 aa21.32■■□□□ 1
VPS29-206ENST00000549578 APRTP07741 180 aa21.32■■□□□ 1
VPS29-206ENST00000549578 GOLGA6DP0CG33 693 aa21.32■■□□□ 1
VPS29-206ENST00000549578 CD6P30203 668 aa21.32■■□□□ 1
VPS29-206ENST00000549578 POLR2LP62875 67 aaKnown RBP21.32■■□□□ 1
VPS29-206ENST00000549578 SRSF5Q13243 272 aaKnown RBP21.32■■□□□ 1
VPS29-206ENST00000549578 ZNF528Q3MIS6 628 aa21.32■■□□□ 1
VPS29-206ENST00000549578 SYDE1Q6ZW31 735 aaPredicted RBP21.32■■□□□ 1
VPS29-206ENST00000549578 SLC25A41Q8N5S1 370 aa21.32■■□□□ 1
VPS29-206ENST00000549578 NOA1Q8NC60 698 aaKnown RBP21.32■■□□□ 1
VPS29-206ENST00000549578 NELL1Q92832 810 aa21.32■■□□□ 1
VPS29-206ENST00000549578 RMDN1Q96DB5 314 aa21.32■■□□□ 1
VPS29-206ENST00000549578 TOE1Q96GM8 510 aaKnown RBP21.32■■□□□ 1
VPS29-206ENST00000549578 ADGRE3Q9BY15 652 aa21.32■■□□□ 1
VPS29-206ENST00000549578 FAM126AQ9BYI3 521 aaPredicted RBP21.32■■□□□ 1
VPS29-206ENST00000549578 BTBD1Q9H0C5 482 aa21.32■■□□□ 1
VPS29-206ENST00000549578 GOLGA6AQ9NYA3 693 aa21.32■■□□□ 1
VPS29-206ENST00000549578 GGT7Q9UJ14 662 aa21.32■■□□□ 1
VPS29-206ENST00000549578 PHTF1Q9UMS5 762 aa21.32■■□□□ 1
VPS29-206ENST00000549578 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP21.31■■□□□ 1
VPS29-206ENST00000549578 FAM47DPA6NHR8 397 aa21.31■■□□□ 1
VPS29-206ENST00000549578 SLC7A4O43246 635 aa21.31■■□□□ 1
VPS29-206ENST00000549578 PLRG1O43660 514 aaKnown RBP21.31■■□□□ 1
VPS29-206ENST00000549578 NDST3O95803 873 aa21.31■■□□□ 1
VPS29-206ENST00000549578 ALPIP09923 528 aa21.31■■□□□ 1
VPS29-206ENST00000549578 ATXN1LP0C7T5 689 aaKnown RBP21.31■■□□□ 1
VPS29-206ENST00000549578 ADRA1AP35348 466 aa21.31■■□□□ 1
VPS29-206ENST00000549578 LMAN1P49257 510 aa21.31■■□□□ 1
VPS29-206ENST00000549578 CCDC15Q0P6D6 951 aa21.31■■□□□ 1
VPS29-206ENST00000549578 QPCTQ16769 361 aa21.31■■□□□ 1
VPS29-206ENST00000549578 SPACA7Q96KW9 195 aa21.31■■□□□ 1
VPS29-206ENST00000549578 TBL1YQ9BQ87 522 aa21.31■■□□□ 1
VPS29-206ENST00000549578 LRRC40Q9H9A6 602 aa21.31■■□□□ 1
VPS29-206ENST00000549578 WSB2Q9NYS7 404 aaPredicted RBP21.31■■□□□ 1
VPS29-206ENST00000549578 MBD1Q9UIS9 605 aaPredicted RBP21.31■■□□□ 1
VPS29-206ENST00000549578 FADS3Q9Y5Q0 445 aa21.31■■□□□ 1
VPS29-206ENST00000549578 PRR23AA6NEV1 266 aa21.3■■□□□ 1
VPS29-206ENST00000549578 A8MX80 341 aa21.3■■□□□ 1
VPS29-206ENST00000549578 AREL1O15033 823 aa21.3■■□□□ 1
VPS29-206ENST00000549578 EPOP01588 193 aa21.3■■□□□ 1
VPS29-206ENST00000549578 OXTRP30559 389 aa21.3■■□□□ 1
VPS29-206ENST00000549578 ADCY8P40145 1251 aa21.3■■□□□ 1
VPS29-206ENST00000549578 TNNT3P45378 269 aaPredicted RBP21.3■■□□□ 1
VPS29-206ENST00000549578 RPL26P61254 145 aaKnown RBP21.3■■□□□ 1
VPS29-206ENST00000549578 FAM193AP78312 1265 aa21.3■■□□□ 1
VPS29-206ENST00000549578 SLC1A5Q15758 541 aa21.3■■□□□ 1
VPS29-206ENST00000549578 SIRPB2Q5JXA9 342 aa21.3■■□□□ 1
VPS29-206ENST00000549578 MAATS1Q7Z4T9 603 aa21.3■■□□□ 1
VPS29-206ENST00000549578 CCHCR1Q8TD31 782 aa21.3■■□□□ 1
VPS29-206ENST00000549578 RAB7BQ96AH8 199 aa21.3■■□□□ 1
VPS29-206ENST00000549578 SGK2Q9HBY8 427 aa21.3■■□□□ 1
VPS29-206ENST00000549578 ZSCAN32Q9NX65 697 aa21.3■■□□□ 1
VPS29-206ENST00000549578 RPL26L1Q9UNX3 145 aaKnown RBP21.3■■□□□ 1
VPS29-206ENST00000549578 PLXND1Q9Y4D7 1925 aa21.3■■□□□ 1
VPS29-206ENST00000549578 A0A0J9YYE9 177 aa21.29■■□□□ 1
VPS29-206ENST00000549578 ANKRD66B4E2M5 251 aa21.29■■□□□ 1
VPS29-206ENST00000549578 RIOK3O14730 519 aaKnown RBP21.29■■□□□ 1
VPS29-206ENST00000549578 PSMD3O43242 534 aa21.29■■□□□ 1
VPS29-206ENST00000549578 SEMA4FO95754 770 aa21.29■■□□□ 1
VPS29-206ENST00000549578 TRBC1P01850 177 aa21.29■■□□□ 1
VPS29-206ENST00000549578 BCKDHBP21953 392 aa21.29■■□□□ 1
VPS29-206ENST00000549578 GRIA4P48058 902 aa21.29■■□□□ 1
VPS29-206ENST00000549578 CCDC70Q6NSX1 233 aa21.29■■□□□ 1
VPS29-206ENST00000549578 ERAP2Q6P179 960 aa21.29■■□□□ 1
VPS29-206ENST00000549578 RANBP10Q6VN20 620 aa21.29■■□□□ 1
VPS29-206ENST00000549578 USP45Q70EL2 814 aa21.29■■□□□ 1
VPS29-206ENST00000549578 LRRN4CLQ8ND94 238 aa21.29■■□□□ 1
VPS29-206ENST00000549578 GPR174Q9BXC1 333 aa21.29■■□□□ 1
VPS29-206ENST00000549578 TRIM31Q9BZY9 425 aa21.29■■□□□ 1
VPS29-206ENST00000549578 B4GALT6Q9UBX8 382 aa21.29■■□□□ 1
VPS29-206ENST00000549578 PPIL1Q9Y3C6 166 aa21.29■■□□□ 1
VPS29-206ENST00000549578 A0A0U1RQS6 177 aa21.29■■□□□ 1
VPS29-206ENST00000549578 TCRBV7S3A2A0A539 114 aa21.29■■□□□ 1
VPS29-206ENST00000549578 FAM187AA6NFU0 413 aa21.29■■□□□ 1
VPS29-206ENST00000549578 NPIPB15A6NHN6 443 aaPredicted RBP21.29■■□□□ 1
VPS29-206ENST00000549578 ERI2A8K979 691 aaKnown RBP21.29■■□□□ 1
VPS29-206ENST00000549578 NEMP1O14524 444 aa21.29■■□□□ 1
VPS29-206ENST00000549578 AP1G1O43747 822 aa21.29■■□□□ 1
VPS29-206ENST00000549578 RPP40O75818 363 aaKnown RBP21.29■■□□□ 1
VPS29-206ENST00000549578 PIRTP0C851 137 aa21.29■■□□□ 1
VPS29-206ENST00000549578 HLA-DPA1P20036 260 aa21.29■■□□□ 1
VPS29-206ENST00000549578 HNF1BP35680 557 aa21.29■■□□□ 1
VPS29-206ENST00000549578 MMP12P39900 470 aa21.29■■□□□ 1
VPS29-206ENST00000549578 SUOXP51687 545 aa21.29■■□□□ 1
VPS29-206ENST00000549578 ANKRD22Q5VYY1 191 aa21.29■■□□□ 1
VPS29-206ENST00000549578 C8orf74Q6P047 294 aa21.29■■□□□ 1
VPS29-206ENST00000549578 MMGT1Q8N4V1 131 aa21.29■■□□□ 1
VPS29-206ENST00000549578 CPT1BQ92523 772 aa21.29■■□□□ 1
VPS29-206ENST00000549578 LRRC45Q96CN5 670 aa21.29■■□□□ 1
VPS29-206ENST00000549578 SCRN2Q96FV2 425 aa21.29■■□□□ 1
VPS29-206ENST00000549578 MCCC1Q96RQ3 725 aaPredicted RBP21.29■■□□□ 1
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms