RNA–Protein interactions for RNA: ENST00000541342.2

SPIDR-227, Transcript of scaffold protein involved in DNA repair, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene SPIDR, Length 3,311 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPIDR-227ENST00000541342 SLC2A3P11169 496 aa17.3■□□□□ 0.36
SPIDR-227ENST00000541342 XRCC1P18887 633 aaPredicted RBP17.3■□□□□ 0.36
SPIDR-227ENST00000541342 CCNCP24863 283 aa17.3■□□□□ 0.36
SPIDR-227ENST00000541342 SPRP35270 261 aaPredicted RBP17.3■□□□□ 0.36
SPIDR-227ENST00000541342 DEFB103AP81534 67 aa17.3■□□□□ 0.36
SPIDR-227ENST00000541342 ZNF33AQ06730 810 aa17.3■□□□□ 0.36
SPIDR-227ENST00000541342 TRIP4Q15650 581 aaPredicted RBP17.3■□□□□ 0.36
SPIDR-227ENST00000541342 ZNF423Q2M1K9 1284 aa17.3■□□□□ 0.36
SPIDR-227ENST00000541342 LSM12Q3MHD2 195 aaKnown RBP17.3■□□□□ 0.36
SPIDR-227ENST00000541342 DSELQ8IZU8 1212 aa17.3■□□□□ 0.36
SPIDR-227ENST00000541342 LILRA2Q8N149 483 aa17.3■□□□□ 0.36
SPIDR-227ENST00000541342 ATPAF2Q8N5M1 289 aa17.3■□□□□ 0.36
SPIDR-227ENST00000541342 VAT1Q99536 393 aa17.3■□□□□ 0.36
SPIDR-227ENST00000541342 CLSTN3Q9BQT9 956 aa17.3■□□□□ 0.36
SPIDR-227ENST00000541342 NMRAL1Q9HBL8 299 aa17.3■□□□□ 0.36
SPIDR-227ENST00000541342 PRDM5Q9NQX1 630 aaPredicted RBP17.3■□□□□ 0.36
SPIDR-227ENST00000541342 RIMS3Q9UJD0 308 aa17.3■□□□□ 0.36
SPIDR-227ENST00000541342 NEMP1O14524 444 aa17.3■□□□□ 0.36
SPIDR-227ENST00000541342 TRIM13O60858 407 aa17.3■□□□□ 0.36
SPIDR-227ENST00000541342 IGLV3-27P01718 113 aa17.3■□□□□ 0.36
SPIDR-227ENST00000541342 PIGGQ5H8A4 983 aa17.3■□□□□ 0.36
SPIDR-227ENST00000541342 OTOP3Q7RTS5 596 aa17.3■□□□□ 0.36
SPIDR-227ENST00000541342 TICAM1Q8IUC6 712 aa17.3■□□□□ 0.36
SPIDR-227ENST00000541342 ZNF689Q96CS4 500 aaPredicted RBP17.3■□□□□ 0.36
SPIDR-227ENST00000541342 LRRC40Q9H9A6 602 aa17.3■□□□□ 0.36
SPIDR-227ENST00000541342 COG7P83436 770 aa17.29■□□□□ 0.36
SPIDR-227ENST00000541342 MS4A2Q01362 244 aa17.29■□□□□ 0.36
SPIDR-227ENST00000541342 CERCAMQ5T4B2 595 aa17.29■□□□□ 0.36
SPIDR-227ENST00000541342 LZTR1Q8N653 840 aa17.29■□□□□ 0.36
SPIDR-227ENST00000541342 PRICKLE1Q96MT3 831 aaPredicted RBP17.29■□□□□ 0.36
SPIDR-227ENST00000541342 C1QTNF1Q9BXJ1 281 aa17.29■□□□□ 0.36
SPIDR-227ENST00000541342 RC3H2Q9HBD1 1191 aaKnown RBP17.29■□□□□ 0.36
SPIDR-227ENST00000541342 OLA1Q9NTK5 396 aaKnown RBP17.29■□□□□ 0.36
SPIDR-227ENST00000541342 COMMD8Q9NX08 183 aa17.29■□□□□ 0.36
SPIDR-227ENST00000541342 UBP1Q9NZI7 540 aa17.29■□□□□ 0.36
SPIDR-227ENST00000541342 C6orf203Q9P0P8 240 aaPredicted RBP17.29■□□□□ 0.36
SPIDR-227ENST00000541342 BACE2Q9Y5Z0 518 aa17.29■□□□□ 0.36
SPIDR-227ENST00000541342 WASH4PA8MWX3 477 aa17.29■□□□□ 0.36
SPIDR-227ENST00000541342 GRID2O43424 1007 aa17.29■□□□□ 0.36
SPIDR-227ENST00000541342 CNTN5O94779 1100 aa17.29■□□□□ 0.36
SPIDR-227ENST00000541342 SEC24AO95486 1093 aa17.29■□□□□ 0.36
SPIDR-227ENST00000541342 TFAP2AP05549 437 aa17.29■□□□□ 0.36
SPIDR-227ENST00000541342 MRPS22P82650 360 aaKnown RBP17.29■□□□□ 0.36
SPIDR-227ENST00000541342 LAMB3Q13751 1172 aa17.29■□□□□ 0.36
SPIDR-227ENST00000541342 ALFQ53S48 1182 aa17.29■□□□□ 0.36
SPIDR-227ENST00000541342 TMEM198Q66K66 360 aa17.29■□□□□ 0.36
SPIDR-227ENST00000541342 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP17.29■□□□□ 0.36
SPIDR-227ENST00000541342 METTL25Q8N6Q8 603 aa17.29■□□□□ 0.36
SPIDR-227ENST00000541342 TTLL2Q9BWV7 592 aa17.29■□□□□ 0.36
SPIDR-227ENST00000541342 EPB41L1Q9H4G0 881 aa17.29■□□□□ 0.36
SPIDR-227ENST00000541342 SLC12A8A0AV02 714 aa17.29■□□□□ 0.36
SPIDR-227ENST00000541342 VILLO15195 856 aa17.29■□□□□ 0.36
SPIDR-227ENST00000541342 CEACAM7Q14002 265 aa17.29■□□□□ 0.36
SPIDR-227ENST00000541342 ITPRIPL1Q6GPH6 555 aa17.29■□□□□ 0.36
SPIDR-227ENST00000541342 TFAP2DQ7Z6R9 452 aa17.29■□□□□ 0.36
SPIDR-227ENST00000541342 SPATA24Q86W54 205 aa17.29■□□□□ 0.36
SPIDR-227ENST00000541342 CASS4Q9NQ75 786 aa17.29■□□□□ 0.36
SPIDR-227ENST00000541342 GOLGA8TH3BQL2 631 aa17.28■□□□□ 0.36
SPIDR-227ENST00000541342 TLR5O60602 858 aa17.28■□□□□ 0.36
SPIDR-227ENST00000541342 PMLP29590 882 aa17.28■□□□□ 0.36
SPIDR-227ENST00000541342 NSUN2Q08J23 767 aaKnown RBP eCLIP17.28■□□□□ 0.36
SPIDR-227ENST00000541342 IGSF8Q969P0 613 aa17.28■□□□□ 0.36
SPIDR-227ENST00000541342 MYEOVQ96EZ4 313 aa17.28■□□□□ 0.36
SPIDR-227ENST00000541342 PAWRQ96IZ0 340 aaKnown RBP17.28■□□□□ 0.36
SPIDR-227ENST00000541342 BTN2A3PQ96KV6 586 aa17.28■□□□□ 0.36
SPIDR-227ENST00000541342 CDRT15Q96T59 188 aa17.28■□□□□ 0.36
SPIDR-227ENST00000541342 PRPF19Q9UMS4 504 aaKnown RBP17.28■□□□□ 0.36
SPIDR-227ENST00000541342 PTPRSQ13332 1948 aa17.28■□□□□ 0.36
SPIDR-227ENST00000541342 RGSL1A5PLK6 1076 aa17.28■□□□□ 0.36
SPIDR-227ENST00000541342 TRIM43BA6NCK2 446 aa17.28■□□□□ 0.36
SPIDR-227ENST00000541342 CACNG3O60359 315 aa17.28■□□□□ 0.36
SPIDR-227ENST00000541342 MPOP05164 745 aa17.28■□□□□ 0.36
SPIDR-227ENST00000541342 RAP1GAP2Q684P5 730 aa17.28■□□□□ 0.36
SPIDR-227ENST00000541342 TRIM43Q96BQ3 446 aaPredicted RBP17.28■□□□□ 0.36
SPIDR-227ENST00000541342 RCN3Q96D15 328 aa17.28■□□□□ 0.36
SPIDR-227ENST00000541342 IL12RB2Q99665 862 aa17.28■□□□□ 0.36
SPIDR-227ENST00000541342 APOL2Q9BQE5 337 aa17.28■□□□□ 0.36
SPIDR-227ENST00000541342 CHRAC1Q9NRG0 131 aa17.28■□□□□ 0.36
SPIDR-227ENST00000541342 G3BP2Q9UN86 482 aaKnown RBP17.28■□□□□ 0.36
SPIDR-227ENST00000541342 IGLV3-10A0A075B6K4 115 aa17.27■□□□□ 0.36
SPIDR-227ENST00000541342 MATN3O15232 486 aa17.27■□□□□ 0.36
SPIDR-227ENST00000541342 CRTAMO95727 393 aa17.27■□□□□ 0.36
SPIDR-227ENST00000541342 CSF2RAP15509 400 aa17.27■□□□□ 0.36
SPIDR-227ENST00000541342 PKNOX1P55347 436 aa17.27■□□□□ 0.36
SPIDR-227ENST00000541342 FRG1Q14331 258 aaKnown RBP17.27■□□□□ 0.36
SPIDR-227ENST00000541342 ARL13AQ5H913 290 aaPredicted RBP17.27■□□□□ 0.36
SPIDR-227ENST00000541342 SPOUT1Q5T280 376 aaKnown RBP17.27■□□□□ 0.36
SPIDR-227ENST00000541342 ARMC3Q5W041 872 aa17.27■□□□□ 0.36
SPIDR-227ENST00000541342 FBXL22Q6P050 247 aa17.27■□□□□ 0.36
SPIDR-227ENST00000541342 ATP6V0D2Q8N8Y2 350 aa17.27■□□□□ 0.36
SPIDR-227ENST00000541342 KYQ8NBH2 561 aa17.27■□□□□ 0.36
SPIDR-227ENST00000541342 SPATA22Q8NHS9 363 aa17.27■□□□□ 0.36
SPIDR-227ENST00000541342 VPS39Q96JC1 886 aa17.27■□□□□ 0.36
SPIDR-227ENST00000541342 ACE2Q9BYF1 805 aaPredicted RBP17.27■□□□□ 0.36
SPIDR-227ENST00000541342 DRC3Q9H069 523 aa17.27■□□□□ 0.36
SPIDR-227ENST00000541342 ILKAPQ9H0C8 392 aaPredicted RBP17.27■□□□□ 0.36
SPIDR-227ENST00000541342 ZDHHC2Q9UIJ5 367 aa17.27■□□□□ 0.36
SPIDR-227ENST00000541342 SMIM31A0A1B0GVY4 71 aa17.27■□□□□ 0.36
SPIDR-227ENST00000541342 STX16-NPEPL1H3BU86 382 aa17.27■□□□□ 0.36
SPIDR-227ENST00000541342 HDAC3O15379 428 aa17.27■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms