RNA–Protein interactions for RNA: ENST00000540975.5

YBX3-210, Transcript of Y-box binding protein 3, humanhuman

TSL 3

Gene YBX3, Length 677 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-210ENST00000540975 SF3B4Q15427 424 aaKnown RBP eCLIP6.16□□□□□ -1.42
YBX3-210ENST00000540975 BAK1Q16611 211 aa6.16□□□□□ -1.42
YBX3-210ENST00000540975 FAM69BQ5VUD6 431 aa6.16□□□□□ -1.42
YBX3-210ENST00000540975 LRRC8EQ6NSJ5 796 aa6.16□□□□□ -1.42
YBX3-210ENST00000540975 SPSB3Q6PJ21 355 aa6.16□□□□□ -1.42
YBX3-210ENST00000540975 NOXA1Q86UR1 476 aa6.16□□□□□ -1.42
YBX3-210ENST00000540975 ERGIC1Q969X5 290 aa6.16□□□□□ -1.42
YBX3-210ENST00000540975 LMLNQ96KR4 655 aa6.16□□□□□ -1.42
YBX3-210ENST00000540975 GAREM1Q9H706 876 aa6.16□□□□□ -1.42
YBX3-210ENST00000540975 DDX31Q9H8H2 851 aaKnown RBP6.16□□□□□ -1.42
YBX3-210ENST00000540975 PPP1R14DQ9NXH3 145 aa6.16□□□□□ -1.42
YBX3-210ENST00000540975 NFS1Q9Y697 457 aa6.16□□□□□ -1.42
YBX3-210ENST00000540975 A0A1B0GUV1 79 aa6.15□□□□□ -1.42
YBX3-210ENST00000540975 COX7A2P14406 83 aa6.15□□□□□ -1.42
YBX3-210ENST00000540975 POU1F1P28069 291 aa6.15□□□□□ -1.42
YBX3-210ENST00000540975 GGT5P36269 586 aa6.15□□□□□ -1.42
YBX3-210ENST00000540975 PEX5P50542 639 aa6.15□□□□□ -1.42
YBX3-210ENST00000540975 EEF1A2Q05639 463 aaKnown RBP6.15□□□□□ -1.42
YBX3-210ENST00000540975 COASYQ13057 564 aa6.15□□□□□ -1.42
YBX3-210ENST00000540975 DHX34Q14147 1143 aaKnown RBP6.15□□□□□ -1.42
YBX3-210ENST00000540975 GPR68Q15743 365 aa6.15□□□□□ -1.42
YBX3-210ENST00000540975 RHBDF2Q6PJF5 856 aa6.15□□□□□ -1.42
YBX3-210ENST00000540975 DLK2Q6UY11 383 aa6.15□□□□□ -1.42
YBX3-210ENST00000540975 ZC3HC1Q86WB0 502 aaKnown RBP6.15□□□□□ -1.42
YBX3-210ENST00000540975 LILRB1Q8NHL6 650 aaPredicted RBP6.15□□□□□ -1.42
YBX3-210ENST00000540975 HTRA1Q92743 480 aa6.15□□□□□ -1.42
YBX3-210ENST00000540975 SCMH1Q96GD3 660 aa6.15□□□□□ -1.42
YBX3-210ENST00000540975 DUX5Q96PT3 197 aa6.15□□□□□ -1.42
YBX3-210ENST00000540975 SIN3AQ96ST3 1273 aa6.15□□□□□ -1.42
YBX3-210ENST00000540975 MPHOSPH8Q99549 860 aa6.15□□□□□ -1.42
YBX3-210ENST00000540975 hDV102S1A0JD36 115 aa6.14□□□□□ -1.43
YBX3-210ENST00000540975 CPED1A4D0V7 1026 aa6.14□□□□□ -1.43
YBX3-210ENST00000540975 SMTNL1A8MU46 457 aa6.14□□□□□ -1.43
YBX3-210ENST00000540975 ZIC3O60481 467 aa6.14□□□□□ -1.43
YBX3-210ENST00000540975 IGHV4-30-4P0DP06 118 aa6.14□□□□□ -1.43
YBX3-210ENST00000540975 ETFAP13804 333 aa6.14□□□□□ -1.43
YBX3-210ENST00000540975 DAOP14920 347 aa6.14□□□□□ -1.43
YBX3-210ENST00000540975 AGAP20933 346 aa6.14□□□□□ -1.43
YBX3-210ENST00000540975 GPTP24298 496 aa6.14□□□□□ -1.43
YBX3-210ENST00000540975 CHATP28329 748 aa6.14□□□□□ -1.43
YBX3-210ENST00000540975 COMPP49747 757 aaPredicted RBP6.14□□□□□ -1.43
YBX3-210ENST00000540975 EFNA5P52803 228 aa6.14□□□□□ -1.43
YBX3-210ENST00000540975 GAS1P54826 345 aa6.14□□□□□ -1.43
YBX3-210ENST00000540975 RPL36AP83881 106 aaKnown RBP6.14□□□□□ -1.43
YBX3-210ENST00000540975 GALNT2Q10471 571 aa6.14□□□□□ -1.43
YBX3-210ENST00000540975 GRIK3Q13003 919 aa6.14□□□□□ -1.43
YBX3-210ENST00000540975 NEDD9Q14511 834 aa6.14□□□□□ -1.43
YBX3-210ENST00000540975 HIST2H2ACQ16777 129 aaPredicted RBP6.14□□□□□ -1.43
YBX3-210ENST00000540975 SGO1Q5FBB7 561 aa6.14□□□□□ -1.43
YBX3-210ENST00000540975 C20orf141Q9NUB4 165 aa6.14□□□□□ -1.43
YBX3-210ENST00000540975 CISD1Q9NZ45 108 aaKnown RBP6.14□□□□□ -1.43
YBX3-210ENST00000540975 LSM4Q9Y4Z0 139 aaKnown RBP6.14□□□□□ -1.43
YBX3-210ENST00000540975 CCDC196A0A1B0GTZ2 297 aa6.13□□□□□ -1.43
YBX3-210ENST00000540975 DENND3A2RUS2 1198 aa6.13□□□□□ -1.43
YBX3-210ENST00000540975 GAGE7O76087 117 aa6.13□□□□□ -1.43
YBX3-210ENST00000540975 MT-CYBP00156 380 aaPredicted RBP6.13□□□□□ -1.43
YBX3-210ENST00000540975 GAGE12FP0CL80 117 aa6.13□□□□□ -1.43
YBX3-210ENST00000540975 GAGE12GP0CL81 117 aa6.13□□□□□ -1.43
YBX3-210ENST00000540975 GAGE12IP0CL82 117 aa6.13□□□□□ -1.43
YBX3-210ENST00000540975 TUBP50607 506 aa6.13□□□□□ -1.43
YBX3-210ENST00000540975 DLG1Q12959 904 aa6.13□□□□□ -1.43
YBX3-210ENST00000540975 GAGE1Q13065 139 aa6.13□□□□□ -1.43
YBX3-210ENST00000540975 GAGE4Q13068 117 aa6.13□□□□□ -1.43
YBX3-210ENST00000540975 SLC9C2Q5TAH2 1124 aa6.13□□□□□ -1.43
YBX3-210ENST00000540975 TXNDC8Q6A555 127 aa6.13□□□□□ -1.43
YBX3-210ENST00000540975 RRM2BQ7LG56 351 aa6.13□□□□□ -1.43
YBX3-210ENST00000540975 DHX40Q8IX18 779 aaKnown RBP6.13□□□□□ -1.43
YBX3-210ENST00000540975 ZCCHC9Q8N567 271 aaKnown RBP6.13□□□□□ -1.43
YBX3-210ENST00000540975 ZNF570Q96NI8 536 aa6.13□□□□□ -1.43
YBX3-210ENST00000540975 BBS4Q96RK4 519 aa6.13□□□□□ -1.43
YBX3-210ENST00000540975 SLC9A2Q9UBY0 812 aa6.13□□□□□ -1.43
YBX3-210ENST00000540975 SLC13A4Q9UKG4 626 aa6.13□□□□□ -1.43
YBX3-210ENST00000540975 GJD2Q9UKL4 321 aa6.13□□□□□ -1.43
YBX3-210ENST00000540975 FAM96BQ9Y3D0 163 aa6.13□□□□□ -1.43
YBX3-210ENST00000540975 SNX9Q9Y5X1 595 aa6.13□□□□□ -1.43
YBX3-210ENST00000540975 TEX13CA0A0J9YWL9 993 aa6.12□□□□□ -1.43
YBX3-210ENST00000540975 IFITM10A6NMD0 228 aa6.12□□□□□ -1.43
YBX3-210ENST00000540975 TSPAN4O14817 238 aa6.12□□□□□ -1.43
YBX3-210ENST00000540975 HNRNPH1P31943 449 aaKnown RBP6.12□□□□□ -1.43
YBX3-210ENST00000540975 PPP2R5BQ15173 497 aa6.12□□□□□ -1.43
YBX3-210ENST00000540975 EFNB3Q15768 340 aa6.12□□□□□ -1.43
YBX3-210ENST00000540975 PRICKLE4Q2TBC4 344 aa6.12□□□□□ -1.43
YBX3-210ENST00000540975 SLC9B1Q4ZJI4 515 aa6.12□□□□□ -1.43
YBX3-210ENST00000540975 SETMARQ53H47 684 aaPredicted RBP6.12□□□□□ -1.43
YBX3-210ENST00000540975 B3GNT6Q6ZMB0 384 aa6.12□□□□□ -1.43
YBX3-210ENST00000540975 CREB3L4Q8TEY5 395 aa6.12□□□□□ -1.43
YBX3-210ENST00000540975 FBXL8Q96CD0 374 aa6.12□□□□□ -1.43
YBX3-210ENST00000540975 RNF125Q96EQ8 232 aa6.12□□□□□ -1.43
YBX3-210ENST00000540975 KLHL15Q96M94 604 aa6.12□□□□□ -1.43
YBX3-210ENST00000540975 ATXN2Q99700 1313 aaKnown RBP6.12□□□□□ -1.43
YBX3-210ENST00000540975 KRTAP2-2Q9BYT5 123 aa6.12□□□□□ -1.43
YBX3-210ENST00000540975 GLIS2Q9BZE0 524 aaPredicted RBP6.12□□□□□ -1.43
YBX3-210ENST00000540975 MAGEE1Q9HCI5 957 aa6.12□□□□□ -1.43
YBX3-210ENST00000540975 WASH6PQ9NQA3 447 aa6.12□□□□□ -1.43
YBX3-210ENST00000540975 DDX4Q9NQI0 724 aaKnown RBP6.12□□□□□ -1.43
YBX3-210ENST00000540975 SLCO3A1Q9UIG8 710 aa6.12□□□□□ -1.43
YBX3-210ENST00000540975 CDC14AQ9UNH5 594 aa6.12□□□□□ -1.43
YBX3-210ENST00000540975 CYP46A1Q9Y6A2 500 aa6.12□□□□□ -1.43
YBX3-210ENST00000540975 LOC102724159A0A0B4J2E5 919 aa6.11□□□□□ -1.43
YBX3-210ENST00000540975 PLSCR5A0PG75 271 aa6.11□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 65.3 ms