RNA–Protein interactions for RNA: ENST00000495090.6

SYNE1-230, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 1,907 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-230ENST00000495090 GALNT18Q6P9A2 607 aa9.74□□□□□ -0.85
SYNE1-230ENST00000495090 BNIPLQ7Z465 357 aa9.74□□□□□ -0.85
SYNE1-230ENST00000495090 UNC93AQ86WB7 457 aa9.74□□□□□ -0.85
SYNE1-230ENST00000495090 CMTR2Q8IYT2 770 aaKnown RBP9.74□□□□□ -0.85
SYNE1-230ENST00000495090 PYROXD2Q8N2H3 581 aa9.74□□□□□ -0.85
SYNE1-230ENST00000495090 SFRP1Q8N474 314 aa9.74□□□□□ -0.85
SYNE1-230ENST00000495090 STARD8Q92502 1023 aa9.74□□□□□ -0.85
SYNE1-230ENST00000495090 FBXL8Q96CD0 374 aa9.74□□□□□ -0.85
SYNE1-230ENST00000495090 FBXL20Q96IG2 436 aa9.74□□□□□ -0.85
SYNE1-230ENST00000495090 ZBED3Q96IU2 234 aaPredicted RBP9.74□□□□□ -0.85
SYNE1-230ENST00000495090 B3GNT5Q9BYG0 378 aa9.74□□□□□ -0.85
SYNE1-230ENST00000495090 CEP41Q9BYV8 373 aa9.74□□□□□ -0.85
SYNE1-230ENST00000495090 MAGEB5Q9BZ81 275 aa9.74□□□□□ -0.85
SYNE1-230ENST00000495090 WDR12Q9GZL7 423 aaKnown RBP9.74□□□□□ -0.85
SYNE1-230ENST00000495090 ARMC7Q9H6L4 198 aa9.74□□□□□ -0.85
SYNE1-230ENST00000495090 ACSS2Q9NR19 701 aa9.74□□□□□ -0.85
SYNE1-230ENST00000495090 FAM49BQ9NUQ9 324 aa9.74□□□□□ -0.85
SYNE1-230ENST00000495090 PRMT7Q9NVM4 692 aaPredicted RBP9.74□□□□□ -0.85
SYNE1-230ENST00000495090 OAZ3Q9UMX2 235 aa9.74□□□□□ -0.85
SYNE1-230ENST00000495090 AURKCQ9UQB9 309 aa9.74□□□□□ -0.85
SYNE1-230ENST00000495090 A0A0G2JMZ2 1700 aa9.74□□□□□ -0.85
SYNE1-230ENST00000495090 LRRC37A2A6NM11 1700 aa9.74□□□□□ -0.85
SYNE1-230ENST00000495090 CROCCQ5TZA2 2017 aa9.74□□□□□ -0.85
SYNE1-230ENST00000495090 MYO18AQ92614 2054 aaKnown RBP9.74□□□□□ -0.85
SYNE1-230ENST00000495090 FNDC1Q4ZHG4 1894 aaPredicted RBP9.74□□□□□ -0.85
SYNE1-230ENST00000495090 CCDC78A2IDD5 438 aa9.74□□□□□ -0.85
SYNE1-230ENST00000495090 ZBTB42B2RXF5 422 aa9.74□□□□□ -0.85
SYNE1-230ENST00000495090 CLDN25C9JDP6 229 aa9.74□□□□□ -0.85
SYNE1-230ENST00000495090 NME4O00746 187 aa9.74□□□□□ -0.85
SYNE1-230ENST00000495090 EI24O14681 340 aa9.74□□□□□ -0.85
SYNE1-230ENST00000495090 ABCB7O75027 752 aa9.74□□□□□ -0.85
SYNE1-230ENST00000495090 SEC24DO94855 1032 aaPredicted RBP9.74□□□□□ -0.85
SYNE1-230ENST00000495090 PGK1P00558 417 aa9.74□□□□□ -0.85
SYNE1-230ENST00000495090 GFAPP14136 432 aa9.74□□□□□ -0.85
SYNE1-230ENST00000495090 MATN1P21941 496 aa9.74□□□□□ -0.85
SYNE1-230ENST00000495090 BCAT1P54687 386 aa9.74□□□□□ -0.85
SYNE1-230ENST00000495090 AIF1P55008 147 aa9.74□□□□□ -0.85
SYNE1-230ENST00000495090 C1QTNF8P60827 252 aa9.74□□□□□ -0.85
SYNE1-230ENST00000495090 BST2Q10589 180 aaKnown RBP9.74□□□□□ -0.85
SYNE1-230ENST00000495090 CDH17Q12864 832 aa9.74□□□□□ -0.85
SYNE1-230ENST00000495090 SOWAHAQ2M3V2 549 aa9.74□□□□□ -0.85
SYNE1-230ENST00000495090 CERCAMQ5T4B2 595 aa9.74□□□□□ -0.85
SYNE1-230ENST00000495090 AGAP7PQ5VUJ5 663 aa9.74□□□□□ -0.85
SYNE1-230ENST00000495090 GTF2IRD2BQ6EKJ0 949 aa9.74□□□□□ -0.85
SYNE1-230ENST00000495090 NAPEPLDQ6IQ20 393 aa9.74□□□□□ -0.85
SYNE1-230ENST00000495090 NEK10Q6ZWH5 1172 aa9.74□□□□□ -0.85
SYNE1-230ENST00000495090 LARP4Q71RC2 724 aaKnown RBP eCLIP9.74□□□□□ -0.85
SYNE1-230ENST00000495090 TFAP2DQ7Z6R9 452 aa9.74□□□□□ -0.85
SYNE1-230ENST00000495090 LINC00523Q86TU6 105 aa9.74□□□□□ -0.85
SYNE1-230ENST00000495090 CUZD1Q86UP6 607 aa9.74□□□□□ -0.85
SYNE1-230ENST00000495090 GTF2IRD2Q86UP8 949 aa9.74□□□□□ -0.85
SYNE1-230ENST00000495090 SLC41A1Q8IVJ1 513 aa9.74□□□□□ -0.85
SYNE1-230ENST00000495090 CCDC117Q8IWD4 279 aaPredicted RBP9.74□□□□□ -0.85
SYNE1-230ENST00000495090 DDIASQ8IXT1 998 aa9.74□□□□□ -0.85
SYNE1-230ENST00000495090 TBC1D21Q8IYX1 336 aa9.74□□□□□ -0.85
SYNE1-230ENST00000495090 HDAC10Q969S8 669 aa9.74□□□□□ -0.85
SYNE1-230ENST00000495090 NXNL1Q96CM4 212 aa9.74□□□□□ -0.85
SYNE1-230ENST00000495090 HSFY1Q96LI6 401 aa9.74□□□□□ -0.85
SYNE1-230ENST00000495090 ALPK1Q96QP1 1244 aa9.74□□□□□ -0.85
SYNE1-230ENST00000495090 BCL7BQ9BQE9 202 aa9.74□□□□□ -0.85
SYNE1-230ENST00000495090 MLPHQ9BV36 600 aaPredicted RBP9.74□□□□□ -0.85
SYNE1-230ENST00000495090 RAD21L1Q9H4I0 556 aa9.74□□□□□ -0.85
SYNE1-230ENST00000495090 ZFYVE28Q9HCC9 887 aa9.74□□□□□ -0.85
SYNE1-230ENST00000495090 HMG20AQ9NP66 347 aa9.74□□□□□ -0.85
SYNE1-230ENST00000495090 CHRAC1Q9NRG0 131 aa9.74□□□□□ -0.85
SYNE1-230ENST00000495090 IFT80Q9P2H3 777 aaPredicted RBP9.74□□□□□ -0.85
SYNE1-230ENST00000495090 VWA7Q9Y334 891 aa9.74□□□□□ -0.85
SYNE1-230ENST00000495090 FAM95CA0A1B0GW59 222 aa9.73□□□□□ -0.85
SYNE1-230ENST00000495090 USP12O75317 370 aa9.73□□□□□ -0.85
SYNE1-230ENST00000495090 IPO13O94829 963 aaKnown RBP9.73□□□□□ -0.85
SYNE1-230ENST00000495090 AHSGP02765 367 aa9.73□□□□□ -0.85
SYNE1-230ENST00000495090 UGT2B4P06133 528 aa9.73□□□□□ -0.85
SYNE1-230ENST00000495090 TGFB3P10600 412 aa9.73□□□□□ -0.85
SYNE1-230ENST00000495090 HDCP19113 662 aa9.73□□□□□ -0.85
SYNE1-230ENST00000495090 GPX3P22352 226 aa9.73□□□□□ -0.85
SYNE1-230ENST00000495090 GSTM2P28161 218 aa9.73□□□□□ -0.85
SYNE1-230ENST00000495090 NMBRP28336 390 aa9.73□□□□□ -0.85
SYNE1-230ENST00000495090 NOS2P35228 1153 aa9.73□□□□□ -0.85
SYNE1-230ENST00000495090 IREB2P48200 963 aaKnown RBP9.73□□□□□ -0.85
SYNE1-230ENST00000495090 ARCN1P48444 511 aaKnown RBP9.73□□□□□ -0.85
SYNE1-230ENST00000495090 NME3Q13232 169 aa9.73□□□□□ -0.85
SYNE1-230ENST00000495090 ITGADQ13349 1161 aa9.73□□□□□ -0.85
SYNE1-230ENST00000495090 OLIG2Q13516 323 aa9.73□□□□□ -0.85
SYNE1-230ENST00000495090 TMEM132BQ14DG7 1078 aa9.73□□□□□ -0.85
SYNE1-230ENST00000495090 NEDD8Q15843 81 aa9.73□□□□□ -0.85
SYNE1-230ENST00000495090 SLC10A6Q3KNW5 377 aa9.73□□□□□ -0.85
SYNE1-230ENST00000495090 RBM48Q5RL73 367 aaKnown RBP9.73□□□□□ -0.85
SYNE1-230ENST00000495090 METTL7BQ6UX53 244 aa9.73□□□□□ -0.85
SYNE1-230ENST00000495090 PTRH1Q86Y79 214 aaKnown RBP9.73□□□□□ -0.85
SYNE1-230ENST00000495090 SLC22A9Q8IVM8 553 aa9.73□□□□□ -0.85
SYNE1-230ENST00000495090 FUNDC1Q8IVP5 155 aa9.73□□□□□ -0.85
SYNE1-230ENST00000495090 LRRC71Q8N4P6 559 aa9.73□□□□□ -0.85
SYNE1-230ENST00000495090 RNF169Q8NCN4 708 aa9.73□□□□□ -0.85
SYNE1-230ENST00000495090 ZC3H15Q8WU90 426 aaKnown RBP9.73□□□□□ -0.85
SYNE1-230ENST00000495090 PTCD2Q8WV60 388 aaKnown RBP9.73□□□□□ -0.85
SYNE1-230ENST00000495090 S100ZQ8WXG8 99 aa9.73□□□□□ -0.85
SYNE1-230ENST00000495090 NT5C3BQ969T7 300 aa9.73□□□□□ -0.85
SYNE1-230ENST00000495090 HDAC11Q96DB2 347 aa9.73□□□□□ -0.85
SYNE1-230ENST00000495090 UBXN10Q96LJ8 280 aa9.73□□□□□ -0.85
SYNE1-230ENST00000495090 C12orf42Q96LP6 360 aa9.73□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms