RNA–Protein interactions for RNA: ENST00000495039.1

VPS50-219, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 1,115 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-219ENST00000495039 ANKRD10Q9NXR5 420 aa3.88□□□□□ -1.79
VPS50-219ENST00000495039 NDUFAF4Q9P032 175 aa3.88□□□□□ -1.79
VPS50-219ENST00000495039 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP3.87□□□□□ -1.79
VPS50-219ENST00000495039 WNT9BO14905 357 aa3.87□□□□□ -1.79
VPS50-219ENST00000495039 HSPA12AO43301 675 aa3.87□□□□□ -1.79
VPS50-219ENST00000495039 EIF3JO75822 258 aaKnown RBP3.87□□□□□ -1.79
VPS50-219ENST00000495039 ACTL6BO94805 426 aa3.87□□□□□ -1.79
VPS50-219ENST00000495039 SRCP12931 536 aa3.87□□□□□ -1.79
VPS50-219ENST00000495039 ARSAP15289 507 aa3.87□□□□□ -1.79
VPS50-219ENST00000495039 HALP42357 657 aa3.87□□□□□ -1.79
VPS50-219ENST00000495039 GRK6P43250 576 aa3.87□□□□□ -1.79
VPS50-219ENST00000495039 RPE65Q16518 533 aa3.87□□□□□ -1.79
VPS50-219ENST00000495039 ATP13A5Q4VNC0 1218 aa3.87□□□□□ -1.79
VPS50-219ENST00000495039 RUNDC3AQ59EK9 446 aa3.87□□□□□ -1.79
VPS50-219ENST00000495039 SULT6B1Q6IMI4 303 aa3.87□□□□□ -1.79
VPS50-219ENST00000495039 ZNF497Q6ZNH5 498 aa3.87□□□□□ -1.79
VPS50-219ENST00000495039 SLC44A2Q8IWA5 706 aaPredicted RBP3.87□□□□□ -1.79
VPS50-219ENST00000495039 CNBD1Q8NA66 436 aa3.87□□□□□ -1.79
VPS50-219ENST00000495039 SPATA5Q8NB90 893 aa3.87□□□□□ -1.79
VPS50-219ENST00000495039 CREB3L4Q8TEY5 395 aa3.87□□□□□ -1.79
VPS50-219ENST00000495039 TRAPPC12Q8WVT3 735 aa3.87□□□□□ -1.79
VPS50-219ENST00000495039 RUBCNQ92622 972 aa3.87□□□□□ -1.79
VPS50-219ENST00000495039 OTULINQ96BN8 352 aa3.87□□□□□ -1.79
VPS50-219ENST00000495039 LITAFQ99732 161 aa3.87□□□□□ -1.79
VPS50-219ENST00000495039 PABPC3Q9H361 631 aaKnown RBP3.87□□□□□ -1.79
VPS50-219ENST00000495039 NOX4Q9NPH5 578 aa3.87□□□□□ -1.79
VPS50-219ENST00000495039 ATP8A2Q9NTI2 1148 aa3.87□□□□□ -1.79
VPS50-219ENST00000495039 THAP1Q9NVV9 213 aa3.87□□□□□ -1.79
VPS50-219ENST00000495039 NLKQ9UBE8 527 aa3.87□□□□□ -1.79
VPS50-219ENST00000495039 GRHPRQ9UBQ7 328 aa3.87□□□□□ -1.79
VPS50-219ENST00000495039 POU2F3Q9UKI9 436 aa3.87□□□□□ -1.79
VPS50-219ENST00000495039 TNFSF12-TNFSF13A0A0A6YY99 330 aa3.86□□□□□ -1.79
VPS50-219ENST00000495039 CAPN9O14815 690 aa3.86□□□□□ -1.79
VPS50-219ENST00000495039 MID1O15344 667 aa3.86□□□□□ -1.79
VPS50-219ENST00000495039 CYP21A2P08686 494 aa3.86□□□□□ -1.79
VPS50-219ENST00000495039 TFPIP10646 304 aa3.86□□□□□ -1.79
VPS50-219ENST00000495039 ACP5P13686 325 aa3.86□□□□□ -1.79
VPS50-219ENST00000495039 CD53P19397 219 aa3.86□□□□□ -1.79
VPS50-219ENST00000495039 GJC1P36383 396 aa3.86□□□□□ -1.79
VPS50-219ENST00000495039 MTNR1AP48039 350 aa3.86□□□□□ -1.79
VPS50-219ENST00000495039 FMO5P49326 533 aa3.86□□□□□ -1.79
VPS50-219ENST00000495039 CENPAP49450 140 aa3.86□□□□□ -1.79
VPS50-219ENST00000495039 SLC18A2Q05940 514 aa3.86□□□□□ -1.79
VPS50-219ENST00000495039 PRKG1Q13976 671 aa3.86□□□□□ -1.79
VPS50-219ENST00000495039 ZRSR2Q15696 482 aaKnown RBP3.86□□□□□ -1.79
VPS50-219ENST00000495039 ME3Q16798 604 aa3.86□□□□□ -1.79
VPS50-219ENST00000495039 TIGD6Q17RP2 521 aa3.86□□□□□ -1.79
VPS50-219ENST00000495039 AMZ1Q400G9 498 aa3.86□□□□□ -1.79
VPS50-219ENST00000495039 IRAK1BP1Q5VVH5 260 aa3.86□□□□□ -1.79
VPS50-219ENST00000495039 TANGO2Q6ICL3 276 aa3.86□□□□□ -1.79
VPS50-219ENST00000495039 SYNE3Q6ZMZ3 975 aa3.86□□□□□ -1.79
VPS50-219ENST00000495039 DSG4Q86SJ6 1040 aa3.86□□□□□ -1.79
VPS50-219ENST00000495039 SMC5Q8IY18 1101 aa3.86□□□□□ -1.79
VPS50-219ENST00000495039 ANKRD42Q8N9B4 389 aa3.86□□□□□ -1.79
VPS50-219ENST00000495039 ZNF248Q8NDW4 579 aa3.86□□□□□ -1.79
VPS50-219ENST00000495039 SCAMP5Q8TAC9 235 aa3.86□□□□□ -1.79
VPS50-219ENST00000495039 TRIM63Q969Q1 353 aa3.86□□□□□ -1.79
VPS50-219ENST00000495039 YME1L1Q96TA2 773 aa3.86□□□□□ -1.79
VPS50-219ENST00000495039 DCTN5Q9BTE1 182 aa3.86□□□□□ -1.79
VPS50-219ENST00000495039 PRDM8Q9NQV8 689 aa3.86□□□□□ -1.79
VPS50-219ENST00000495039 KCNS2Q9ULS6 477 aa3.86□□□□□ -1.79
VPS50-219ENST00000495039 RIPOR2Q9Y4F9 1068 aa3.86□□□□□ -1.79
VPS50-219ENST00000495039 HMX3A6NHT5 357 aa3.85□□□□□ -1.79
VPS50-219ENST00000495039 IPO5O00410 1097 aaKnown RBP3.85□□□□□ -1.79
VPS50-219ENST00000495039 HBP1O60381 514 aa3.85□□□□□ -1.79
VPS50-219ENST00000495039 RFPL2O75678 378 aa3.85□□□□□ -1.79
VPS50-219ENST00000495039 METTL18O95568 372 aa3.85□□□□□ -1.79
VPS50-219ENST00000495039 ZNF10P21506 573 aaPredicted RBP3.85□□□□□ -1.79
VPS50-219ENST00000495039 PITX1P78337 314 aaPredicted RBP3.85□□□□□ -1.79
VPS50-219ENST00000495039 SLC20A2Q08357 652 aa3.85□□□□□ -1.79
VPS50-219ENST00000495039 BYSLQ13895 437 aaKnown RBP3.85□□□□□ -1.79
VPS50-219ENST00000495039 IL13RA2Q14627 380 aa3.85□□□□□ -1.79
VPS50-219ENST00000495039 AP5B1Q2VPB7 878 aa3.85□□□□□ -1.79
VPS50-219ENST00000495039 LRRC24Q50LG9 513 aa3.85□□□□□ -1.79
VPS50-219ENST00000495039 LIN54Q6MZP7 749 aa3.85□□□□□ -1.79
VPS50-219ENST00000495039 JMJD6Q6NYC1 403 aaPredicted RBP3.85□□□□□ -1.79
VPS50-219ENST00000495039 CCNI2Q6ZMN8 369 aaPredicted RBP3.85□□□□□ -1.79
VPS50-219ENST00000495039 NKAPQ8N5F7 415 aaKnown RBP3.85□□□□□ -1.79
VPS50-219ENST00000495039 CADM4Q8NFZ8 388 aa3.85□□□□□ -1.79
VPS50-219ENST00000495039 SPATA22Q8NHS9 363 aa3.85□□□□□ -1.79
VPS50-219ENST00000495039 C3orf49Q96BT1 292 aa3.85□□□□□ -1.79
VPS50-219ENST00000495039 LGALS12Q96DT0 336 aa3.85□□□□□ -1.79
VPS50-219ENST00000495039 TRAPPC9Q96Q05 1148 aa3.85□□□□□ -1.79
VPS50-219ENST00000495039 FAM167BQ9BTA0 163 aa3.85□□□□□ -1.79
VPS50-219ENST00000495039 MYH16Q9H6N6 1097 aa3.85□□□□□ -1.79
VPS50-219ENST00000495039 SPATS2LQ9NUQ6 558 aaKnown RBP3.85□□□□□ -1.79
VPS50-219ENST00000495039 CLDN16Q9Y5I7 305 aa3.85□□□□□ -1.79
VPS50-219ENST00000495039 ASPDHA6ND91 283 aa3.84□□□□□ -1.79
VPS50-219ENST00000495039 PMS2P5A8MQ11 134 aa3.84□□□□□ -1.79
VPS50-219ENST00000495039 SLC25A17O43808 307 aa3.84□□□□□ -1.79
VPS50-219ENST00000495039 PIP5K1CO60331 668 aa3.84□□□□□ -1.79
VPS50-219ENST00000495039 MVDP53602 400 aa3.84□□□□□ -1.79
VPS50-219ENST00000495039 PNLIPRP1P54315 467 aa3.84□□□□□ -1.79
VPS50-219ENST00000495039 DHX8Q14562 1220 aaKnown RBP3.84□□□□□ -1.79
VPS50-219ENST00000495039 POSTNQ15063 836 aa3.84□□□□□ -1.79
VPS50-219ENST00000495039 ZNF876PQ49A33 203 aa3.84□□□□□ -1.79
VPS50-219ENST00000495039 GORABQ5T7V8 394 aa3.84□□□□□ -1.79
VPS50-219ENST00000495039 ZC2HC1BQ5TFG8 222 aa3.84□□□□□ -1.79
VPS50-219ENST00000495039 ARHGAP17Q68EM7 881 aa3.84□□□□□ -1.79
VPS50-219ENST00000495039 RRAGAQ7L523 313 aa3.84□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms