RNA–Protein interactions for RNA: ENST00000494566.5

CCDC88B-210, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 2,909 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-210ENST00000494566 SH3RF2Q8TEC5 729 aa16.65■□□□□ 0.26
CCDC88B-210ENST00000494566 ZFAND2BQ8WV99 257 aa16.65■□□□□ 0.26
CCDC88B-210ENST00000494566 HMCESQ96FZ2 354 aa16.65■□□□□ 0.26
CCDC88B-210ENST00000494566 TSNARE1Q96NA8 513 aa16.65■□□□□ 0.26
CCDC88B-210ENST00000494566 TSGA13Q96PP4 275 aa16.65■□□□□ 0.26
CCDC88B-210ENST00000494566 GMIPQ9P107 970 aa16.65■□□□□ 0.26
CCDC88B-210ENST00000494566 OR51F1A6NGY5 319 aa16.64■□□□□ 0.25
CCDC88B-210ENST00000494566 RNASEH2AO75792 299 aaKnown RBP16.64■□□□□ 0.25
CCDC88B-210ENST00000494566 UGT1A6P19224 532 aa16.64■□□□□ 0.25
CCDC88B-210ENST00000494566 WNT3AP56704 352 aa16.64■□□□□ 0.25
CCDC88B-210ENST00000494566 DSC2Q02487 901 aa16.64■□□□□ 0.25
CCDC88B-210ENST00000494566 CSHL1Q14406 222 aa16.64■□□□□ 0.25
CCDC88B-210ENST00000494566 ZFP28Q8NHY6 868 aa16.64■□□□□ 0.25
CCDC88B-210ENST00000494566 EME1Q96AY2 570 aa16.64■□□□□ 0.25
CCDC88B-210ENST00000494566 PPWD1Q96BP3 646 aaKnown RBP16.64■□□□□ 0.25
CCDC88B-210ENST00000494566 HAPLN3Q96S86 360 aa16.64■□□□□ 0.25
CCDC88B-210ENST00000494566 SIKE1Q9BRV8 207 aa16.64■□□□□ 0.25
CCDC88B-210ENST00000494566 CAAP1Q9H8G2 361 aa16.64■□□□□ 0.25
CCDC88B-210ENST00000494566 TNFRSF12AQ9NP84 129 aa16.64■□□□□ 0.25
CCDC88B-210ENST00000494566 SLC27A5Q9Y2P5 690 aa16.64■□□□□ 0.25
CCDC88B-210ENST00000494566 SNX13Q9Y5W8 968 aa16.64■□□□□ 0.25
CCDC88B-210ENST00000494566 VILLO15195 856 aa16.64■□□□□ 0.25
CCDC88B-210ENST00000494566 ANXA9O76027 345 aa16.64■□□□□ 0.25
CCDC88B-210ENST00000494566 ADRA1AP35348 466 aa16.64■□□□□ 0.25
CCDC88B-210ENST00000494566 PTPRCAPQ14761 206 aa16.64■□□□□ 0.25
CCDC88B-210ENST00000494566 TSTD2Q5T7W7 516 aa16.64■□□□□ 0.25
CCDC88B-210ENST00000494566 LIPMQ5VYY2 423 aa16.64■□□□□ 0.25
CCDC88B-210ENST00000494566 ZYG11AQ6WRX3 759 aa16.64■□□□□ 0.25
CCDC88B-210ENST00000494566 LRTOMTQ8WZ04 291 aa16.64■□□□□ 0.25
CCDC88B-210ENST00000494566 CIB1Q99828 191 aa16.64■□□□□ 0.25
CCDC88B-210ENST00000494566 ACOT9Q9Y305 439 aa16.64■□□□□ 0.25
CCDC88B-210ENST00000494566 KCTD3Q9Y597 815 aa16.64■□□□□ 0.25
CCDC88B-210ENST00000494566 SEPT4O43236 478 aa16.63■□□□□ 0.25
CCDC88B-210ENST00000494566 GRID2O43424 1007 aa16.63■□□□□ 0.25
CCDC88B-210ENST00000494566 CACNG3O60359 315 aa16.63■□□□□ 0.25
CCDC88B-210ENST00000494566 STMN1P16949 149 aa16.63■□□□□ 0.25
CCDC88B-210ENST00000494566 PBX3P40426 434 aa16.63■□□□□ 0.25
CCDC88B-210ENST00000494566 MAPK10P53779 464 aa16.63■□□□□ 0.25
CCDC88B-210ENST00000494566 SLC12A1Q13621 1099 aa16.63■□□□□ 0.25
CCDC88B-210ENST00000494566 CLLU1OSQ5K130 101 aa16.63■□□□□ 0.25
CCDC88B-210ENST00000494566 FAM43BQ6ZT52 329 aaPredicted RBP16.63■□□□□ 0.25
CCDC88B-210ENST00000494566 CPNE9Q8IYJ1 553 aa16.63■□□□□ 0.25
CCDC88B-210ENST00000494566 LSMEM2Q8N112 164 aa16.63■□□□□ 0.25
CCDC88B-210ENST00000494566 RTL3Q8N8U3 475 aaKnown RBP16.63■□□□□ 0.25
CCDC88B-210ENST00000494566 KLHDC9Q8NEP7 349 aa16.63■□□□□ 0.25
CCDC88B-210ENST00000494566 MYEOVQ96EZ4 313 aa16.63■□□□□ 0.25
CCDC88B-210ENST00000494566 PSMD13Q9UNM6 376 aa16.63■□□□□ 0.25
CCDC88B-210ENST00000494566 V9GYQ6 96 aa16.63■□□□□ 0.25
CCDC88B-210ENST00000494566 MIA3Q5JRA6 1907 aa16.63■□□□□ 0.25
CCDC88B-210ENST00000494566 FAM149AA5PLN7 773 aa16.63■□□□□ 0.25
CCDC88B-210ENST00000494566 KLHL33A6NCF5 533 aa16.63■□□□□ 0.25
CCDC88B-210ENST00000494566 KPNA6O60684 536 aa16.63■□□□□ 0.25
CCDC88B-210ENST00000494566 CKMT2P17540 419 aa16.63■□□□□ 0.25
CCDC88B-210ENST00000494566 KCNA5P22460 613 aa16.63■□□□□ 0.25
CCDC88B-210ENST00000494566 RPL14P50914 215 aaKnown RBP16.63■□□□□ 0.25
CCDC88B-210ENST00000494566 RAB10P61026 200 aa16.63■□□□□ 0.25
CCDC88B-210ENST00000494566 TMED1Q13445 227 aa16.63■□□□□ 0.25
CCDC88B-210ENST00000494566 HNRNPDQ14103 355 aaKnown RBP16.63■□□□□ 0.25
CCDC88B-210ENST00000494566 MTX3Q5HYI7 312 aa16.63■□□□□ 0.25
CCDC88B-210ENST00000494566 BRMS1LQ5PSV4 323 aa16.63■□□□□ 0.25
CCDC88B-210ENST00000494566 HEXDCQ8WVB3 486 aa16.63■□□□□ 0.25
CCDC88B-210ENST00000494566 PSMG2Q969U7 264 aa16.63■□□□□ 0.25
CCDC88B-210ENST00000494566 OLFM1Q99784 485 aa16.63■□□□□ 0.25
CCDC88B-210ENST00000494566 STN1Q9H668 368 aaKnown RBP16.63■□□□□ 0.25
CCDC88B-210ENST00000494566 ACTL7AQ9Y615 435 aa16.63■□□□□ 0.25
CCDC88B-210ENST00000494566 PIRTP0C851 137 aa16.63■□□□□ 0.25
CCDC88B-210ENST00000494566 PRKAR2AP13861 404 aaKnown RBP16.63■□□□□ 0.25
CCDC88B-210ENST00000494566 GEMP55040 296 aa16.63■□□□□ 0.25
CCDC88B-210ENST00000494566 PDAP1Q13442 181 aaKnown RBP16.63■□□□□ 0.25
CCDC88B-210ENST00000494566 LSAMPQ13449 338 aa16.63■□□□□ 0.25
CCDC88B-210ENST00000494566 RARS2Q5T160 578 aaKnown RBP16.63■□□□□ 0.25
CCDC88B-210ENST00000494566 RAP1GAP2Q684P5 730 aa16.63■□□□□ 0.25
CCDC88B-210ENST00000494566 RYBPQ8N488 228 aaPredicted RBP16.63■□□□□ 0.25
CCDC88B-210ENST00000494566 RTKNQ9BST9 563 aa16.63■□□□□ 0.25
CCDC88B-210ENST00000494566 FBRSL1Q9HCM7 1045 aaKnown RBP16.63■□□□□ 0.25
CCDC88B-210ENST00000494566 TRPC7Q9HCX4 862 aa16.63■□□□□ 0.25
CCDC88B-210ENST00000494566 FBXO5Q9UKT4 447 aa16.63■□□□□ 0.25
CCDC88B-210ENST00000494566 DSEQ9UL01 958 aa16.63■□□□□ 0.25
CCDC88B-210ENST00000494566 SORCS3Q9UPU3 1222 aa16.63■□□□□ 0.25
CCDC88B-210ENST00000494566 PTGDR2Q9Y5Y4 395 aa16.63■□□□□ 0.25
CCDC88B-210ENST00000494566 COPG1Q9Y678 874 aaKnown RBP16.63■□□□□ 0.25
CCDC88B-210ENST00000494566 RGSL1A5PLK6 1076 aa16.62■□□□□ 0.25
CCDC88B-210ENST00000494566 MATN2O00339 956 aa16.62■□□□□ 0.25
CCDC88B-210ENST00000494566 GALK1P51570 392 aa16.62■□□□□ 0.25
CCDC88B-210ENST00000494566 CLEC6AQ6EIG7 209 aa16.62■□□□□ 0.25
CCDC88B-210ENST00000494566 TXNDC5Q8NBS9 432 aaKnown RBP16.62■□□□□ 0.25
CCDC88B-210ENST00000494566 STYXQ8WUJ0 223 aa16.62■□□□□ 0.25
CCDC88B-210ENST00000494566 IGSF8Q969P0 613 aa16.62■□□□□ 0.25
CCDC88B-210ENST00000494566 GPR78Q96P69 363 aa16.62■□□□□ 0.25
CCDC88B-210ENST00000494566 DRC3Q9H069 523 aa16.62■□□□□ 0.25
CCDC88B-210ENST00000494566 CDYLQ9Y232 598 aa16.62■□□□□ 0.25
CCDC88B-210ENST00000494566 PLOD2O00469 737 aa16.62■□□□□ 0.25
CCDC88B-210ENST00000494566 HDAC3O15379 428 aa16.62■□□□□ 0.25
CCDC88B-210ENST00000494566 FGF10O15520 208 aaPredicted RBP16.62■□□□□ 0.25
CCDC88B-210ENST00000494566 CLIC3O95833 236 aa16.62■□□□□ 0.25
CCDC88B-210ENST00000494566 PABPC4LP0CB38 370 aaKnown RBP16.62■□□□□ 0.25
CCDC88B-210ENST00000494566 THRAP10827 490 aa16.62■□□□□ 0.25
CCDC88B-210ENST00000494566 GATMP50440 423 aa16.62■□□□□ 0.25
CCDC88B-210ENST00000494566 CSRP3P50461 194 aa16.62■□□□□ 0.25
CCDC88B-210ENST00000494566 MLLT6P55198 1093 aaPredicted RBP16.62■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms