RNA–Protein interactions for RNA: ENST00000493662.6

MSH5-SAPCD1-207, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS P5 TSL 1 (best) BASIC

Gene MSH5-SAPCD1, Length 3,991 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-207ENST00000493662 ZFP1Q6P2D0 407 aa10.82□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 ATP6V0D2Q8N8Y2 350 aa10.82□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 SNX31Q8N9S9 440 aa10.82□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 ZSCAN18Q8TBC5 510 aaPredicted RBP10.82□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 FNDC8Q8TC99 324 aa10.82□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 SEMA3CQ99985 751 aa10.82□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 TRIM15Q9C019 465 aa10.82□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 TLR8Q9NR97 1041 aaKnown RBP10.82□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 TBCCD1Q9NVR7 557 aa10.82□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 ADAM28Q9UKQ2 775 aa10.82□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 HTR3EA5X5Y0 456 aa10.82□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 SUPT7LO94864 414 aa10.82□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 TRIM16O95361 564 aa10.82□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 TFPTP0C1Z6 253 aa10.82□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 SYN1P17600 705 aa10.82□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 IVDP26440 423 aa10.82□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 IFNEQ86WN2 208 aa10.82□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 DENND6AQ8IWF6 608 aa10.82□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 TERB1Q8NA31 727 aa10.82□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 C12orf50Q8NA57 414 aaPredicted RBP10.82□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 GABPB2Q8TAK5 448 aaPredicted RBP10.82□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 CEP19Q96LK0 163 aa10.82□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 EBNA1BP2Q99848 306 aaKnown RBP10.82□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 CINPQ9BW66 212 aaPredicted RBP10.82□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 ENTPD7Q9NQZ7 604 aa10.82□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 MOSPD1Q9UJG1 213 aa10.82□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 MID2Q9UJV3 735 aa10.82□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 DSEQ9UL01 958 aa10.82□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 KIAA1217Q5T5P2 1943 aa10.82□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 OR51F1A6NGY5 319 aa10.82□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 FBP2O00757 339 aa10.82□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 BIRC5O15392 142 aa10.82□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 ZNF12P17014 697 aa10.82□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 OXCT1P55809 520 aa10.82□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 DSC2Q02487 901 aa10.82□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 HPS6Q86YV9 775 aa10.82□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 SLC41A1Q8IVJ1 513 aa10.82□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 CRYBG2Q8N1P7 616 aa10.82□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 KYQ8NBH2 561 aa10.82□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 GPR63Q9BZJ6 419 aa10.82□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 C6orf203Q9P0P8 240 aaPredicted RBP10.82□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 LGALS13Q9UHV8 139 aa10.82□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 CLUHO75153 1309 aa10.82□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 LAMA3Q16787 3333 aa10.82□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 PHIPQ8WWQ0 1821 aa10.81□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 A0A1W2PQ45 241 aaPredicted RBP10.81□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 A0A1W2PQY0 241 aa10.81□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 RHOCP08134 193 aa10.81□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 MSX2P35548 267 aaPredicted RBP10.81□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 NAGLUP54802 743 aa10.81□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 SFT2D3Q587I9 215 aa10.81□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 VWA5B1Q5TIE3 1220 aa10.81□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 KIAA0319Q5VV43 1072 aa10.81□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 SERINC5Q86VE9 423 aa10.81□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 NAT16Q8N8M0 369 aa10.81□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 PSMG2Q969U7 264 aa10.81□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 ZNF778Q96MU6 729 aa10.81□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 TMEM106CQ9BVX2 250 aa10.81□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 NFKBIZQ9BYH8 718 aa10.81□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 CIPCQ9C0C6 399 aa10.81□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 LATS2Q9NRM7 1088 aa10.81□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 CAMSAP3Q9P1Y5 1249 aaPredicted RBP10.81□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 UXTQ9UBK9 157 aaPredicted RBP10.81□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 NME7Q9Y5B8 376 aa10.81□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 ANGPTL3Q9Y5C1 460 aa10.81□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 PSAT1Q9Y617 370 aa10.81□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 ATP6AP2A0A1C7CYW4 349 aa10.81□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 SAC3D1A6NKF1 404 aa10.81□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 AXIN1O15169 862 aa10.81□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 SH3BGRLO75368 114 aa10.81□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 ATP6AP2O75787 350 aa10.81□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 TSPAN9O75954 239 aa10.81□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 CNTN5O94779 1100 aa10.81□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 ABHD2P08910 425 aa10.81□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 CTPS1P17812 591 aa10.81□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 SLC11A2P49281 568 aa10.81□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 PEX6Q13608 980 aa10.81□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 SPIDRQ14159 915 aa10.81□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 FUT10Q6P4F1 479 aa10.81□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 TREML1Q86YW5 311 aa10.81□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 ERI1Q8IV48 349 aaKnown RBP10.81□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 FBXW8Q8N3Y1 598 aa10.81□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 OLIG1Q8TAK6 271 aa10.81□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 SERPINB11Q96P15 392 aa10.81□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 EGFL8Q99944 293 aa10.81□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 CORO1BQ9BR76 489 aa10.81□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 C1orf50Q9BV19 199 aa10.81□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 ARMC7Q9H6L4 198 aa10.81□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 POLR1BQ9H9Y6 1135 aa10.81□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 PSMD13Q9UNM6 376 aa10.81□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 ACTL7AQ9Y615 435 aa10.81□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 SPAG6O75602 509 aa10.81□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 SELPP16109 830 aa10.81□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 RPL9P32969 192 aaKnown RBP10.81□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 NR2C2P49116 596 aa10.81□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 ADAM17P78536 824 aa10.81□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 SMAD3P84022 425 aaKnown RBP10.81□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 RHBDF2Q6PJF5 856 aa10.81□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 STRADAQ7RTN6 431 aa10.81□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 PSTKQ8IV42 348 aaKnown RBP10.81□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms