RNA–Protein interactions for RNA: ENST00000491747.6

BRCA1-219, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 5 BASIC

Gene BRCA1, Length 2,379 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-219ENST00000491747 PRPF4O43172 522 aaKnown RBP eCLIP9.52□□□□□ -0.895e-17■■■■■ 29.7
BRCA1-219ENST00000491747 SMAD6O43541 496 aaKnown RBP9.52□□□□□ -0.89
BRCA1-219ENST00000491747 PSTPIP1O43586 416 aa9.52□□□□□ -0.89
BRCA1-219ENST00000491747 ZMPSTE24O75844 475 aa9.52□□□□□ -0.89
BRCA1-219ENST00000491747 SMNDC1O75940 238 aaKnown RBP eCLIP9.52□□□□□ -0.89
BRCA1-219ENST00000491747 ASMTLO95671 621 aa9.52□□□□□ -0.89
BRCA1-219ENST00000491747 CD160O95971 181 aa9.52□□□□□ -0.89
BRCA1-219ENST00000491747 C7P10643 843 aa9.52□□□□□ -0.89
BRCA1-219ENST00000491747 EPHB2P29323 1055 aa9.52□□□□□ -0.89
BRCA1-219ENST00000491747 FOXN2P32314 431 aa9.52□□□□□ -0.89
BRCA1-219ENST00000491747 GCKP35557 465 aa9.52□□□□□ -0.89
BRCA1-219ENST00000491747 CETN2P41208 172 aa9.52□□□□□ -0.89
BRCA1-219ENST00000491747 MAGEA4P43358 317 aa9.52□□□□□ -0.89
BRCA1-219ENST00000491747 WDR4P57081 412 aaKnown RBP9.52□□□□□ -0.89
BRCA1-219ENST00000491747 ST8SIA6P61647 398 aa9.52□□□□□ -0.89
BRCA1-219ENST00000491747 RPS14P62263 151 aaKnown RBP9.52□□□□□ -0.89
BRCA1-219ENST00000491747 GNA12Q03113 381 aa9.52□□□□□ -0.89
BRCA1-219ENST00000491747 DNAJC3Q13217 504 aa9.52□□□□□ -0.89
BRCA1-219ENST00000491747 BLMHQ13867 455 aa9.52□□□□□ -0.89
BRCA1-219ENST00000491747 TAF11Q15544 211 aa9.52□□□□□ -0.89
BRCA1-219ENST00000491747 KCNT1Q5JUK3 1230 aa9.52□□□□□ -0.89
BRCA1-219ENST00000491747 SPDYAQ5MJ70 313 aa9.52□□□□□ -0.89
BRCA1-219ENST00000491747 GSTA5Q7RTV2 222 aa9.52□□□□□ -0.89
BRCA1-219ENST00000491747 TRABD2AQ86V40 505 aa9.52□□□□□ -0.89
BRCA1-219ENST00000491747 TDRPQ86YL5 185 aa9.52□□□□□ -0.89
BRCA1-219ENST00000491747 RHOT1Q8IXI2 618 aa9.52□□□□□ -0.89
BRCA1-219ENST00000491747 DEFB119Q8N690 84 aa9.52□□□□□ -0.89
BRCA1-219ENST00000491747 NIPA2Q8N8Q9 360 aa9.52□□□□□ -0.89
BRCA1-219ENST00000491747 KDM1BQ8NB78 822 aa9.52□□□□□ -0.89
BRCA1-219ENST00000491747 MAML1Q92585 1016 aa9.52□□□□□ -0.89
BRCA1-219ENST00000491747 NAF1Q96HR8 494 aaKnown RBP9.52□□□□□ -0.89
BRCA1-219ENST00000491747 SMC6Q96SB8 1091 aa9.52□□□□□ -0.89
BRCA1-219ENST00000491747 FAM129BQ96TA1 746 aa9.52□□□□□ -0.89
BRCA1-219ENST00000491747 MYLK2Q9H1R3 596 aa9.52□□□□□ -0.89
BRCA1-219ENST00000491747 RNPEPL1Q9HAU8 725 aa9.52□□□□□ -0.89
BRCA1-219ENST00000491747 ITM2CQ9NQX7 267 aa9.52□□□□□ -0.89
BRCA1-219ENST00000491747 USP36Q9P275 1121 aaKnown RBP9.52□□□□□ -0.89
BRCA1-219ENST00000491747 SUN2Q9UH99 717 aa9.52□□□□□ -0.89
BRCA1-219ENST00000491747 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa9.51□□□□□ -0.89
BRCA1-219ENST00000491747 PRPSAP2O60256 369 aa9.51□□□□□ -0.89
BRCA1-219ENST00000491747 PROSCO94903 275 aa9.51□□□□□ -0.89
BRCA1-219ENST00000491747 SRCP12931 536 aa9.51□□□□□ -0.89
BRCA1-219ENST00000491747 CALB2P22676 271 aa9.51□□□□□ -0.89
BRCA1-219ENST00000491747 TGM1P22735 817 aa9.51□□□□□ -0.89
BRCA1-219ENST00000491747 PCK1P35558 622 aa9.51□□□□□ -0.89
BRCA1-219ENST00000491747 ARF5P84085 180 aa9.51□□□□□ -0.89
BRCA1-219ENST00000491747 SLC25A11Q02978 314 aaKnown RBP9.51□□□□□ -0.89
BRCA1-219ENST00000491747 SULT2A1Q06520 285 aa9.51□□□□□ -0.89
BRCA1-219ENST00000491747 PIGHQ14442 188 aaPredicted RBP9.51□□□□□ -0.89
BRCA1-219ENST00000491747 ACAP1Q15027 740 aa9.51□□□□□ -0.89
BRCA1-219ENST00000491747 SMTNL2Q2TAL5 461 aa9.51□□□□□ -0.89
BRCA1-219ENST00000491747 PMS2CLQ68D20 193 aa9.51□□□□□ -0.89
BRCA1-219ENST00000491747 LAIR1Q6GTX8 287 aa9.51□□□□□ -0.89
BRCA1-219ENST00000491747 TMEFF1Q8IYR6 380 aa9.51□□□□□ -0.89
BRCA1-219ENST00000491747 RTL3Q8N8U3 475 aaKnown RBP9.51□□□□□ -0.89
BRCA1-219ENST00000491747 NETO2Q8NC67 525 aa9.51□□□□□ -0.89
BRCA1-219ENST00000491747 ARMC2Q8NEN0 867 aa9.51□□□□□ -0.89
BRCA1-219ENST00000491747 LRRC8CQ8TDW0 803 aa9.51□□□□□ -0.89
BRCA1-219ENST00000491747 SIPA1Q96FS4 1042 aa9.51□□□□□ -0.89
BRCA1-219ENST00000491747 PWWP2AQ96N64 755 aa9.51□□□□□ -0.89
BRCA1-219ENST00000491747 SPON2Q9BUD6 331 aa9.51□□□□□ -0.89
BRCA1-219ENST00000491747 ACE2Q9BYF1 805 aaPredicted RBP9.51□□□□□ -0.89
BRCA1-219ENST00000491747 OSBPL8Q9BZF1 889 aa9.51□□□□□ -0.89
BRCA1-219ENST00000491747 KLC2Q9H0B6 622 aa9.51□□□□□ -0.89
BRCA1-219ENST00000491747 RSPH9Q9H1X1 276 aaPredicted RBP9.51□□□□□ -0.89
BRCA1-219ENST00000491747 ZWILCHQ9H900 591 aa9.51□□□□□ -0.89
BRCA1-219ENST00000491747 PPCSQ9HAB8 311 aa9.51□□□□□ -0.89
BRCA1-219ENST00000491747 PARD6AQ9NPB6 346 aa9.51□□□□□ -0.89
BRCA1-219ENST00000491747 IP6K2Q9UHH9 426 aa9.51□□□□□ -0.89
BRCA1-219ENST00000491747 R3HDM2Q9Y2K5 976 aaKnown RBP9.51□□□□□ -0.89
BRCA1-219ENST00000491747 WASH4PA8MWX3 477 aa9.51□□□□□ -0.89
BRCA1-219ENST00000491747 RNF103O00237 685 aa9.51□□□□□ -0.89
BRCA1-219ENST00000491747 CBX4O00257 560 aa9.51□□□□□ -0.89
BRCA1-219ENST00000491747 ATP9BO43861 1147 aa9.51□□□□□ -0.89
BRCA1-219ENST00000491747 SKAP2O75563 359 aaPredicted RBP9.51□□□□□ -0.89
BRCA1-219ENST00000491747 GOT1P17174 413 aa9.51□□□□□ -0.89
BRCA1-219ENST00000491747 KRT15P19012 456 aa9.51□□□□□ -0.89
BRCA1-219ENST00000491747 MAPKAPK2P49137 400 aa9.51□□□□□ -0.89
BRCA1-219ENST00000491747 VASPP50552 380 aaPredicted RBP9.51□□□□□ -0.89
BRCA1-219ENST00000491747 TPMTP51580 245 aa9.51□□□□□ -0.89
BRCA1-219ENST00000491747 DLG2Q15700 870 aa9.51□□□□□ -0.89
BRCA1-219ENST00000491747 CCDC6Q16204 474 aa9.51□□□□□ -0.89
BRCA1-219ENST00000491747 PDK4Q16654 411 aa9.51□□□□□ -0.89
BRCA1-219ENST00000491747 ATP13A4Q4VNC1 1196 aa9.51□□□□□ -0.89
BRCA1-219ENST00000491747 ZNF783Q6ZMS7 281 aa9.51□□□□□ -0.89
BRCA1-219ENST00000491747 METTL3Q86U44 580 aaKnown RBP9.51□□□□□ -0.89
BRCA1-219ENST00000491747 STK40Q8N2I9 435 aa9.51□□□□□ -0.89
BRCA1-219ENST00000491747 DCAF4L2Q8NA75 395 aa9.51□□□□□ -0.89
BRCA1-219ENST00000491747 UTP4Q969X6 686 aaKnown RBP9.51□□□□□ -0.89
BRCA1-219ENST00000491747 EPAS1Q99814 870 aa9.51□□□□□ -0.89
BRCA1-219ENST00000491747 HERPUD2Q9BSE4 406 aa9.51□□□□□ -0.89
BRCA1-219ENST00000491747 HEMGNQ9BXL5 484 aa9.51□□□□□ -0.89
BRCA1-219ENST00000491747 ATP13A1Q9HD20 1204 aa9.51□□□□□ -0.89
BRCA1-219ENST00000491747 SLC25A13Q9UJS0 675 aa9.51□□□□□ -0.89
BRCA1-219ENST00000491747 RAB23Q9ULC3 237 aa9.51□□□□□ -0.89
BRCA1-219ENST00000491747 RPL26L1Q9UNX3 145 aaKnown RBP9.51□□□□□ -0.89
BRCA1-219ENST00000491747 CHKBQ9Y259 395 aa9.51□□□□□ -0.89
BRCA1-219ENST00000491747 HS3ST2Q9Y278 367 aa9.51□□□□□ -0.89
BRCA1-219ENST00000491747 OTOGLQ3ZCN5 2332 aa9.51□□□□□ -0.89
BRCA1-219ENST00000491747 NUMA1Q14980 2115 aa9.51□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 66.1 ms