RNA–Protein interactions for RNA: ENST00000368019.5

USF1-201, Transcript of upstream transcription factor 1, humanhuman

TSL 5 BASIC

Gene USF1, Length 998 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF1-201ENST00000368019 PDE5AO76074 875 aa11.63□□□□□ -0.55
USF1-201ENST00000368019 FAM58BPP0C7Q3 252 aa11.63□□□□□ -0.55
USF1-201ENST00000368019 CXCL8P10145 99 aa11.63□□□□□ -0.55
USF1-201ENST00000368019 COL6A2P12110 1019 aa11.63□□□□□ -0.55
USF1-201ENST00000368019 CYP3A5P20815 502 aa11.63□□□□□ -0.55
USF1-201ENST00000368019 KCNA4P22459 653 aa11.63□□□□□ -0.55
USF1-201ENST00000368019 PIK3R1P27986 724 aa11.63□□□□□ -0.55
USF1-201ENST00000368019 ARL4AP40617 200 aa11.63□□□□□ -0.55
USF1-201ENST00000368019 NDST1P52848 882 aa11.63□□□□□ -0.55
USF1-201ENST00000368019 RAB15P59190 212 aa11.63□□□□□ -0.55
USF1-201ENST00000368019 FOXK2Q01167 660 aa11.63□□□□□ -0.55
USF1-201ENST00000368019 PRKAA1Q13131 559 aa11.63□□□□□ -0.55
USF1-201ENST00000368019 CYLC2Q14093 348 aaPredicted RBP11.63□□□□□ -0.55
USF1-201ENST00000368019 TMEM132DQ14C87 1099 aa11.63□□□□□ -0.55
USF1-201ENST00000368019 PAFAH1B3Q15102 231 aaKnown RBP11.63□□□□□ -0.55
USF1-201ENST00000368019 PDK1Q15118 436 aa11.63□□□□□ -0.55
USF1-201ENST00000368019 CNGA3Q16281 694 aa11.63□□□□□ -0.55
USF1-201ENST00000368019 CA9Q16790 459 aa11.63□□□□□ -0.55
USF1-201ENST00000368019 ZNF423Q2M1K9 1284 aa11.63□□□□□ -0.55
USF1-201ENST00000368019 GOLGA7BQ2TAP0 167 aa11.63□□□□□ -0.55
USF1-201ENST00000368019 TBC1D25Q3MII6 688 aa11.63□□□□□ -0.55
USF1-201ENST00000368019 JADE1Q6IE81 842 aa11.63□□□□□ -0.55
USF1-201ENST00000368019 C16orf46Q6P387 395 aa11.63□□□□□ -0.55
USF1-201ENST00000368019 SCYL2Q6P3W7 929 aa11.63□□□□□ -0.55
USF1-201ENST00000368019 TMEM135Q86UB9 458 aa11.63□□□□□ -0.55
USF1-201ENST00000368019 SATL1Q86VE3 508 aa11.63□□□□□ -0.55
USF1-201ENST00000368019 HPS6Q86YV9 775 aa11.63□□□□□ -0.55
USF1-201ENST00000368019 CSPG4P5Q96PW8 444 aa11.63□□□□□ -0.55
USF1-201ENST00000368019 TTPALQ9BTX7 342 aa11.63□□□□□ -0.55
USF1-201ENST00000368019 RPP25Q9BUL9 199 aaKnown RBP11.63□□□□□ -0.55
USF1-201ENST00000368019 DRC3Q9H069 523 aa11.63□□□□□ -0.55
USF1-201ENST00000368019 ILKAPQ9H0C8 392 aaPredicted RBP11.63□□□□□ -0.55
USF1-201ENST00000368019 BRD8Q9H0E9 1235 aa11.63□□□□□ -0.55
USF1-201ENST00000368019 COG4Q9H9E3 785 aa11.63□□□□□ -0.55
USF1-201ENST00000368019 SNX15Q9NRS6 342 aa11.63□□□□□ -0.55
USF1-201ENST00000368019 SNTG2Q9NY99 539 aa11.63□□□□□ -0.55
USF1-201ENST00000368019 DTLQ9NZJ0 730 aa11.63□□□□□ -0.55
USF1-201ENST00000368019 HMGXB4Q9UGU5 601 aa11.63□□□□□ -0.55
USF1-201ENST00000368019 CA14Q9ULX7 337 aa11.63□□□□□ -0.55
USF1-201ENST00000368019 AP4B1Q9Y6B7 739 aa11.63□□□□□ -0.55
USF1-201ENST00000368019 CITO14578 2027 aa11.63□□□□□ -0.55
USF1-201ENST00000368019 PDCD11Q14690 1871 aaKnown RBP11.63□□□□□ -0.55
USF1-201ENST00000368019 PATJQ8NI35 1801 aa11.63□□□□□ -0.55
USF1-201ENST00000368019 CASTOR2A6NHX0 329 aa11.62□□□□□ -0.55
USF1-201ENST00000368019 G3V2L1 256 aa11.62□□□□□ -0.55
USF1-201ENST00000368019 ADAM12O43184 909 aa11.62□□□□□ -0.55
USF1-201ENST00000368019 MTSS1O43312 755 aa11.62□□□□□ -0.55
USF1-201ENST00000368019 ZBTB14O43829 449 aa11.62□□□□□ -0.55
USF1-201ENST00000368019 RECQL4O94761 1208 aa11.62□□□□□ -0.55
USF1-201ENST00000368019 CRTAMO95727 393 aa11.62□□□□□ -0.55
USF1-201ENST00000368019 THP07101 528 aa11.62□□□□□ -0.55
USF1-201ENST00000368019 POU2F2P09086 479 aa11.62□□□□□ -0.55
USF1-201ENST00000368019 HNRNPA1P09651 372 aaKnown RBP eCLIP11.62□□□□□ -0.55
USF1-201ENST00000368019 NCF2P19878 526 aaPredicted RBP11.62□□□□□ -0.55
USF1-201ENST00000368019 ME2P23368 584 aa11.62□□□□□ -0.55
USF1-201ENST00000368019 FSHRP23945 695 aa11.62□□□□□ -0.55
USF1-201ENST00000368019 PMLP29590 882 aa11.62□□□□□ -0.55
USF1-201ENST00000368019 HOXA9P31269 272 aa11.62□□□□□ -0.55
USF1-201ENST00000368019 PPARGP37231 505 aaPredicted RBP11.62□□□□□ -0.55
USF1-201ENST00000368019 ZNF135P52742 658 aaPredicted RBP11.62□□□□□ -0.55
USF1-201ENST00000368019 AIF1P55008 147 aa11.62□□□□□ -0.55
USF1-201ENST00000368019 TUBA4AP68366 448 aa11.62□□□□□ -0.55
USF1-201ENST00000368019 TXNL4AP83876 142 aaKnown RBP11.62□□□□□ -0.55
USF1-201ENST00000368019 GBE1Q04446 702 aa11.62□□□□□ -0.55
USF1-201ENST00000368019 SLC10A2Q12908 348 aaPredicted RBP11.62□□□□□ -0.55
USF1-201ENST00000368019 FLOT2Q14254 428 aa11.62□□□□□ -0.55
USF1-201ENST00000368019 TLR1Q15399 786 aa11.62□□□□□ -0.55
USF1-201ENST00000368019 PSMD5Q16401 504 aa11.62□□□□□ -0.55
USF1-201ENST00000368019 CDO1Q16878 200 aa11.62□□□□□ -0.55
USF1-201ENST00000368019 LARP7Q4G0J3 582 aaKnown RBP eCLIP11.62□□□□□ -0.55
USF1-201ENST00000368019 INTS6LQ5JSJ4 861 aaKnown RBP11.62□□□□□ -0.55
USF1-201ENST00000368019 FAM171A1Q5VUB5 890 aa11.62□□□□□ -0.55
USF1-201ENST00000368019 CD300LGQ6UXG3 332 aa11.62□□□□□ -0.55
USF1-201ENST00000368019 ZYG11AQ6WRX3 759 aa11.62□□□□□ -0.55
USF1-201ENST00000368019 GET4Q7L5D6 327 aaPredicted RBP11.62□□□□□ -0.55
USF1-201ENST00000368019 GRASPQ7Z6J2 395 aaPredicted RBP11.62□□□□□ -0.55
USF1-201ENST00000368019 RBM12BQ8IXT5 1001 aaKnown RBP11.62□□□□□ -0.55
USF1-201ENST00000368019 UBA3Q8TBC4 463 aa11.62□□□□□ -0.55
USF1-201ENST00000368019 HASPINQ8TF76 798 aa11.62□□□□□ -0.55
USF1-201ENST00000368019 FGF14Q92915 247 aa11.62□□□□□ -0.55
USF1-201ENST00000368019 MPP4Q96JB8 637 aa11.62□□□□□ -0.55
USF1-201ENST00000368019 HSFY1Q96LI6 401 aa11.62□□□□□ -0.55
USF1-201ENST00000368019 KCTD15Q96SI1 283 aaPredicted RBP11.62□□□□□ -0.55
USF1-201ENST00000368019 MCMBPQ9BTE3 642 aa11.62□□□□□ -0.55
USF1-201ENST00000368019 GPATCH2LQ9NWQ4 482 aa11.62□□□□□ -0.55
USF1-201ENST00000368019 SUCOQ9UBS9 1254 aaKnown RBP11.62□□□□□ -0.55
USF1-201ENST00000368019 GPR179Q6PRD1 2367 aa11.62□□□□□ -0.55
USF1-201ENST00000368019 TMEM189-UBE2V1I3L0A0 370 aa11.61□□□□□ -0.55
USF1-201ENST00000368019 ZNF701M0R085 212 aaPredicted RBP11.61□□□□□ -0.55
USF1-201ENST00000368019 STK25O00506 426 aa11.61□□□□□ -0.55
USF1-201ENST00000368019 TRIM38O00635 465 aa11.61□□□□□ -0.55
USF1-201ENST00000368019 TXNDC9O14530 226 aa11.61□□□□□ -0.55
USF1-201ENST00000368019 NCAM2O15394 837 aa11.61□□□□□ -0.55
USF1-201ENST00000368019 PSMD3O43242 534 aa11.61□□□□□ -0.55
USF1-201ENST00000368019 PAPSS1O43252 624 aaPredicted RBP11.61□□□□□ -0.55
USF1-201ENST00000368019 C8BP07358 591 aa11.61□□□□□ -0.55
USF1-201ENST00000368019 GLULP15104 373 aa11.61□□□□□ -0.55
USF1-201ENST00000368019 FGFR3P22607 806 aa11.61□□□□□ -0.55
USF1-201ENST00000368019 IGFBP6P24592 240 aaPredicted RBP11.61□□□□□ -0.55
USF1-201ENST00000368019 MGAT1P26572 445 aa11.61□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 54.6 ms